Wall clock time and date at job start Tue Mar 31 2020 19:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39900 * 109.47404 * 2 1 4 4 F 1.39904 * 109.46887 * 240.00015 * 2 1 3 5 5 C 1.50705 * 109.46964 * 120.00597 * 2 1 3 6 6 O 1.21274 * 120.00145 * 334.99382 * 5 2 1 7 7 N 1.34775 * 119.99888 * 154.99701 * 5 2 1 8 8 C 1.46496 * 120.00143 * 179.97438 * 7 5 2 9 9 C 1.53002 * 109.47363 * 180.02562 * 8 7 5 10 10 O 1.42892 * 110.27048 * 302.08948 * 9 8 7 11 11 C 1.54594 * 110.39134 * 64.23330 * 9 8 7 12 12 C 1.54934 * 102.92040 * 140.91615 * 11 9 8 13 13 N 1.48526 * 103.22841 * 322.58547 * 12 11 9 14 14 C 1.46904 * 111.00300 * 159.71741 * 13 12 11 15 15 C 1.50706 * 109.46676 * 52.60368 * 14 13 12 16 16 O 1.21288 * 120.00284 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99730 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 269.99889 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00409 * 22 20 18 25 25 H 1.48498 * 109.47011 * 150.00030 * 22 20 18 26 26 C 1.47900 * 105.82003 * 39.20633 * 13 12 11 27 27 H 1.09007 * 109.46688 * 299.99727 * 1 2 3 28 28 H 1.09003 * 109.46778 * 59.99210 * 1 2 3 29 29 H 1.08991 * 109.47518 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99683 * 359.97438 * 7 5 2 31 31 H 1.09000 * 109.47211 * 59.99291 * 8 7 5 32 32 H 1.09007 * 109.46940 * 299.99955 * 8 7 5 33 33 H 0.96698 * 114.00512 * 57.91224 * 10 9 8 34 34 H 1.08994 * 110.72159 * 259.27423 * 11 9 8 35 35 H 1.08998 * 110.72420 * 22.37926 * 11 9 8 36 36 H 1.08998 * 110.67108 * 204.15117 * 12 11 9 37 37 H 1.09007 * 110.66654 * 81.01883 * 12 11 9 38 38 H 1.08996 * 109.47230 * 292.60916 * 14 13 12 39 39 H 1.09002 * 109.47146 * 172.60148 * 14 13 12 40 40 H 0.96996 * 119.99887 * 0.02562 * 17 15 14 41 41 H 0.97001 * 119.99781 * 359.97438 * 21 20 18 42 42 H 1.09005 * 109.91663 * 94.02583 * 26 13 12 43 43 H 1.09003 * 109.91880 * 215.11599 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7106 1.2304 6 8 1.3371 -0.7707 2.2223 7 7 3.2543 -1.2792 1.2286 8 6 3.7429 -1.9694 2.4248 9 6 5.1456 -2.5195 2.1591 10 8 5.1263 -3.4037 1.0368 11 6 6.1405 -1.3620 1.9133 12 6 7.4197 -1.8440 2.6426 13 7 6.8865 -2.5224 3.8515 14 6 7.8785 -3.4465 4.4172 15 6 9.1796 -2.7169 4.6319 16 8 9.2713 -1.5426 4.3426 17 7 10.2410 -3.3691 5.1464 18 6 11.4247 -2.7055 5.3412 19 1 11.5066 -1.6600 5.0828 20 6 12.5191 -3.3780 5.8711 21 7 12.4196 -4.6502 6.1850 22 14 14.1318 -2.4736 6.1371 23 1 14.9691 -2.5849 4.9158 24 1 13.8558 -1.0421 6.4195 25 1 14.8525 -3.0751 7.2878 26 6 5.6783 -3.2498 3.4058 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 3.8102 -1.2314 0.4351 31 1 3.0703 -2.7913 2.6702 32 1 3.7797 -1.2687 3.2590 33 1 4.7996 -2.9981 0.2220 34 1 6.3288 -1.2352 0.8473 35 1 5.7697 -0.4352 2.3510 36 1 8.0458 -0.9965 2.9217 37 1 7.9755 -2.5461 2.0210 38 1 8.0367 -4.2762 3.7282 39 1 7.5154 -3.8301 5.3707 40 1 10.1675 -4.3081 5.3781 41 1 11.5820 -5.1197 6.0472 42 1 5.9364 -4.2780 3.1520 43 1 4.9266 -3.2399 4.1951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754747976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:28 Heat of formation + Delta-G solvation = -202.872871 kcal Electronic energy + Delta-G solvation = -29314.298727 eV Core-core repulsion = 24644.818235 eV Total energy + Delta-G solvation = -4669.480492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.74412 -47.73863 -40.65083 -39.62035 -38.29544 -36.15362 -34.90172 -34.27544 -32.18223 -31.62285 -30.98205 -29.54815 -27.57864 -25.88595 -24.32482 -23.77361 -21.80499 -21.11699 -20.59760 -19.69391 -19.33050 -18.34399 -17.95458 -17.53770 -16.99429 -16.36943 -16.13898 -16.03910 -15.57964 -15.41213 -14.88977 -14.62088 -14.58196 -14.46906 -14.05259 -13.96637 -13.84241 -13.64643 -13.44120 -13.30529 -13.15957 -12.99763 -12.87960 -12.53748 -12.46282 -12.02201 -11.83592 -11.35587 -11.30452 -11.20047 -11.03527 -10.92262 -10.54053 -10.26105 -10.22024 -9.87203 -9.79632 -9.55571 -8.51542 -8.14739 -8.03348 -6.78683 -3.92175 1.58884 2.02373 3.13813 3.28166 3.33338 3.38052 3.52323 3.60545 3.79061 3.85632 3.97439 4.06641 4.20677 4.25420 4.39781 4.55364 4.84964 4.87266 4.97540 5.07801 5.20451 5.28381 5.30123 5.31836 5.41815 5.52415 5.58221 5.62794 5.68173 5.80024 5.82204 5.96460 6.11088 6.49613 6.56589 6.98706 7.08438 7.20642 7.27964 7.76870 8.04976 8.55674 8.75914 9.43290 9.82737 10.64597 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.031828 B = 0.002015 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.528172 B =13889.317663 C =14177.998134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.282 3.718 3 F -0.180 7.180 4 F -0.189 7.189 5 C 0.487 3.513 6 O -0.497 6.497 7 N -0.709 5.709 8 C 0.099 3.901 9 C 0.111 3.889 10 O -0.548 6.548 11 C -0.154 4.154 12 C 0.042 3.958 13 N -0.492 5.492 14 C 0.035 3.965 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.572 5.572 18 C -0.382 4.382 19 H 0.100 0.900 20 C -0.010 4.010 21 N -0.900 5.900 22 Si 1.094 2.906 23 H -0.285 1.285 24 H -0.283 1.283 25 H -0.281 1.281 26 C 0.048 3.952 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.405 0.595 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.371 0.629 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.376 0.624 41 H 0.262 0.738 42 H 0.063 0.937 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.599 4.105 -13.534 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.242 3.758 3 F -0.161 7.161 4 F -0.170 7.170 5 C 0.268 3.732 6 O -0.371 6.371 7 N -0.362 5.362 8 C -0.025 4.025 9 C 0.069 3.931 10 O -0.354 6.354 11 C -0.192 4.192 12 C -0.085 4.085 13 N -0.216 5.216 14 C -0.096 4.096 15 C 0.230 3.770 16 O -0.459 6.459 17 N -0.210 5.210 18 C -0.511 4.511 19 H 0.118 0.882 20 C -0.212 4.212 21 N -0.539 5.539 22 Si 0.920 3.080 23 H -0.211 1.211 24 H -0.209 1.209 25 H -0.206 1.206 26 C -0.080 4.080 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.240 0.760 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.219 0.781 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.139 0.861 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.209 0.791 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.292 4.628 -11.587 24.678 hybrid contribution -1.288 -0.643 -1.995 2.460 sum -22.580 3.985 -13.581 26.649 Atomic orbital electron populations 1.22652 0.88602 1.06450 1.06371 1.21371 0.96050 0.76295 0.82077 1.93114 1.90482 1.35941 1.96525 1.93070 1.90475 1.80654 1.52814 1.20718 0.82614 0.80560 0.89320 1.90810 1.55730 1.57607 1.32941 1.45927 1.16955 1.55581 1.17736 1.22297 0.95137 0.97549 0.87481 1.22343 0.92441 0.90265 0.88017 1.86660 1.88413 1.40416 1.19879 1.23332 0.96662 0.98113 1.01114 1.23435 0.95301 1.00847 0.88894 1.64729 1.04199 1.25176 1.27519 1.22127 0.92538 0.94153 1.00814 1.19584 0.84706 0.88131 0.84564 1.90438 1.83762 1.16222 1.55513 1.41924 1.10873 1.11807 1.56393 1.20566 0.88770 0.98313 1.43477 0.88212 1.26534 1.03284 0.96489 0.94905 1.70874 1.28392 1.09085 1.45532 0.83086 0.73265 0.74544 0.77107 1.21116 1.20892 1.20612 1.22833 0.94674 0.97040 0.93495 0.87927 0.88940 0.88713 0.75988 0.89772 0.88953 0.78103 0.90627 0.89715 0.86079 0.94115 0.93098 0.89034 0.79103 0.92699 0.91852 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 8.92 37.16 0.33 -0.65 16 2 C 0.28 2.12 2.47 -27.88 -0.07 2.05 16 3 F -0.18 -1.60 17.05 2.25 0.04 -1.56 16 4 F -0.19 -1.36 16.51 2.25 0.04 -1.32 16 5 C 0.49 4.49 7.23 -10.98 -0.08 4.41 16 6 O -0.50 -5.98 16.09 5.56 0.09 -5.89 16 7 N -0.71 -5.61 5.07 -60.29 -0.31 -5.91 16 8 C 0.10 0.91 4.50 -4.04 -0.02 0.89 16 9 C 0.11 1.15 1.06 -89.27 -0.09 1.06 16 10 O -0.55 -5.48 12.94 -35.23 -0.46 -5.94 16 11 C -0.15 -1.77 5.92 -24.87 -0.15 -1.92 16 12 C 0.04 0.68 5.30 -1.90 -0.01 0.67 16 13 N -0.49 -7.95 5.26 -231.89 -1.22 -9.17 16 14 C 0.04 0.62 5.52 -4.97 -0.03 0.60 16 15 C 0.44 10.30 7.49 -10.98 -0.08 10.22 16 16 O -0.58 -15.04 13.10 5.55 0.07 -14.96 16 17 N -0.57 -14.25 5.28 -10.96 -0.06 -14.31 16 18 C -0.38 -10.62 9.68 -14.93 -0.14 -10.76 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 20 C -0.01 -0.26 5.50 -17.47 -0.10 -0.35 16 21 N -0.90 -25.07 13.68 55.50 0.76 -24.31 16 22 Si 1.09 24.15 29.92 -169.99 -5.09 19.07 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.05 0.60 6.17 -2.76 -0.02 0.59 16 27 H 0.10 0.58 7.87 -51.92 -0.41 0.17 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.40 2.41 6.78 -40.82 -0.28 2.13 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.37 2.33 7.78 45.56 0.35 2.68 16 34 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.08 0.97 7.84 -51.93 -0.41 0.57 16 36 H 0.12 2.37 5.97 -51.93 -0.31 2.06 16 37 H 0.04 0.70 8.02 -51.93 -0.42 0.28 16 38 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.38 8.67 6.73 -40.82 -0.27 8.39 16 41 H 0.26 7.01 6.78 -40.82 -0.28 6.73 16 42 H 0.06 0.81 7.39 -51.93 -0.38 0.43 16 43 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -33.86 362.55 -6.03 -39.89 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.91 Total: 12.17 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.45 Total: 6.80 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.82 Total: -53.71 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.29 Total: -26.79 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.88 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.09 Total: 19.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.86 -6.03 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754747976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.985 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds