Wall clock time and date at job start Tue Mar 31 2020 19:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 F 1.39900 * 109.47404 * 2 1 4 4 F 1.39904 * 109.46887 * 240.00015 * 2 1 3 5 5 C 1.50705 * 109.46964 * 120.00597 * 2 1 3 6 6 O 1.21274 * 120.00145 * 334.99382 * 5 2 1 7 7 N 1.34775 * 119.99888 * 154.99701 * 5 2 1 8 8 C 1.46496 * 120.00143 * 179.97438 * 7 5 2 9 9 C 1.53002 * 109.47363 * 180.02562 * 8 7 5 10 10 O 1.42892 * 110.27048 * 302.08948 * 9 8 7 11 11 C 1.54594 * 110.39134 * 64.23330 * 9 8 7 12 12 C 1.54934 * 102.92040 * 140.91615 * 11 9 8 13 13 N 1.48526 * 103.22841 * 322.58547 * 12 11 9 14 14 C 1.46904 * 111.00300 * 159.71741 * 13 12 11 15 15 C 1.50706 * 109.46676 * 52.60368 * 14 13 12 16 16 O 1.21288 * 120.00284 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99730 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99910 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99930 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 269.99889 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00409 * 22 20 18 25 25 H 1.48498 * 109.47011 * 150.00030 * 22 20 18 26 26 C 1.47900 * 105.82003 * 39.20633 * 13 12 11 27 27 H 1.09007 * 109.46688 * 299.99727 * 1 2 3 28 28 H 1.09003 * 109.46778 * 59.99210 * 1 2 3 29 29 H 1.08991 * 109.47518 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99683 * 359.97438 * 7 5 2 31 31 H 1.09000 * 109.47211 * 59.99291 * 8 7 5 32 32 H 1.09007 * 109.46940 * 299.99955 * 8 7 5 33 33 H 0.96698 * 114.00512 * 57.91224 * 10 9 8 34 34 H 1.08994 * 110.72159 * 259.27423 * 11 9 8 35 35 H 1.08998 * 110.72420 * 22.37926 * 11 9 8 36 36 H 1.08998 * 110.67108 * 204.15117 * 12 11 9 37 37 H 1.09007 * 110.66654 * 81.01883 * 12 11 9 38 38 H 1.08996 * 109.47230 * 292.60916 * 14 13 12 39 39 H 1.09002 * 109.47146 * 172.60148 * 14 13 12 40 40 H 0.96996 * 119.99887 * 0.02562 * 17 15 14 41 41 H 0.97001 * 119.99781 * 359.97438 * 21 20 18 42 42 H 1.09005 * 109.91663 * 94.02583 * 26 13 12 43 43 H 1.09003 * 109.91880 * 215.11599 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7106 1.2304 6 8 1.3371 -0.7707 2.2223 7 7 3.2543 -1.2792 1.2286 8 6 3.7429 -1.9694 2.4248 9 6 5.1456 -2.5195 2.1591 10 8 5.1263 -3.4037 1.0368 11 6 6.1405 -1.3620 1.9133 12 6 7.4197 -1.8440 2.6426 13 7 6.8865 -2.5224 3.8515 14 6 7.8785 -3.4465 4.4172 15 6 9.1796 -2.7169 4.6319 16 8 9.2713 -1.5426 4.3426 17 7 10.2410 -3.3691 5.1464 18 6 11.4247 -2.7055 5.3412 19 1 11.5066 -1.6600 5.0828 20 6 12.5191 -3.3780 5.8711 21 7 12.4196 -4.6502 6.1850 22 14 14.1318 -2.4736 6.1371 23 1 14.9691 -2.5849 4.9158 24 1 13.8558 -1.0421 6.4195 25 1 14.8525 -3.0751 7.2878 26 6 5.6783 -3.2498 3.4058 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 3.8102 -1.2314 0.4351 31 1 3.0703 -2.7913 2.6702 32 1 3.7797 -1.2687 3.2590 33 1 4.7996 -2.9981 0.2220 34 1 6.3288 -1.2352 0.8473 35 1 5.7697 -0.4352 2.3510 36 1 8.0458 -0.9965 2.9217 37 1 7.9755 -2.5461 2.0210 38 1 8.0367 -4.2762 3.7282 39 1 7.5154 -3.8301 5.3707 40 1 10.1675 -4.3081 5.3781 41 1 11.5820 -5.1197 6.0472 42 1 5.9364 -4.2780 3.1520 43 1 4.9266 -3.2399 4.1951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754747976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:27 Heat of formation + Delta-G solvation = -232.115060 kcal Electronic energy + Delta-G solvation = -29315.566764 eV Core-core repulsion = 24644.818235 eV Total energy + Delta-G solvation = -4670.748528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.34632 -48.34392 -41.54907 -40.75179 -39.82803 -37.35617 -36.23577 -35.64565 -33.31152 -32.75889 -32.37920 -30.54824 -28.80034 -27.08316 -25.84602 -24.75499 -22.96189 -21.92108 -21.51838 -21.44522 -20.04890 -19.95177 -18.95168 -18.50969 -17.90976 -17.58622 -17.13139 -17.00601 -16.75615 -16.46386 -16.22194 -16.02923 -15.60247 -15.52479 -15.22032 -14.94734 -14.74032 -14.65480 -14.59564 -14.50120 -13.90411 -13.80791 -13.55526 -13.40753 -13.36634 -13.23323 -13.11231 -13.01635 -12.73103 -12.45597 -12.43314 -12.00852 -11.94922 -11.87957 -11.52586 -11.30192 -11.08914 -10.52918 -10.26769 -10.11851 -9.49629 -8.94180 -6.08218 0.87847 1.36085 1.50388 1.53986 1.81224 1.97156 2.35605 2.52776 2.60660 2.84046 3.06787 3.12034 3.16317 3.26097 3.36510 3.42542 3.50029 3.64995 4.04508 4.16853 4.21800 4.28095 4.39351 4.48881 4.51815 4.53402 4.56404 4.61659 4.70795 4.81988 4.92315 4.96092 4.99565 5.14134 5.56240 5.72971 5.88070 5.91641 5.94971 6.53972 6.54909 6.63750 6.72859 7.41411 7.89397 8.53338 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.031828 B = 0.002015 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.528172 B =13889.317663 C =14177.998134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.285 3.715 3 F -0.188 7.188 4 F -0.185 7.185 5 C 0.486 3.514 6 O -0.528 6.528 7 N -0.700 5.700 8 C 0.108 3.892 9 C 0.127 3.873 10 O -0.556 6.556 11 C -0.143 4.143 12 C 0.040 3.960 13 N -0.507 5.507 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.607 6.607 17 N -0.585 5.585 18 C -0.407 4.407 19 H 0.074 0.926 20 C -0.043 4.043 21 N -0.917 5.917 22 Si 1.136 2.864 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.273 1.273 26 C 0.045 3.955 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.415 0.585 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.389 0.611 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.384 0.616 41 H 0.259 0.741 42 H 0.065 0.935 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.048 3.727 -14.653 28.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.246 3.754 3 F -0.169 7.169 4 F -0.166 7.166 5 C 0.267 3.733 6 O -0.404 6.404 7 N -0.353 5.353 8 C -0.016 4.016 9 C 0.085 3.915 10 O -0.364 6.364 11 C -0.181 4.181 12 C -0.087 4.087 13 N -0.232 5.232 14 C -0.085 4.085 15 C 0.231 3.769 16 O -0.493 6.493 17 N -0.224 5.224 18 C -0.537 4.537 19 H 0.092 0.908 20 C -0.242 4.242 21 N -0.556 5.556 22 Si 0.956 3.044 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.198 1.198 26 C -0.083 4.083 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.240 0.760 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.218 0.782 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.763 4.234 -12.749 26.432 hybrid contribution -0.905 -0.512 -1.708 1.999 sum -23.669 3.722 -14.457 27.983 Atomic orbital electron populations 1.22713 0.86865 1.07298 1.07093 1.21405 0.97123 0.75577 0.81340 1.93101 1.90721 1.36590 1.96527 1.93079 1.90571 1.80533 1.52462 1.21030 0.82501 0.80260 0.89498 1.90798 1.56608 1.58840 1.34145 1.45849 1.16778 1.54910 1.17774 1.22111 0.94335 0.97504 0.87650 1.22030 0.92524 0.89349 0.87592 1.86631 1.88635 1.40563 1.20588 1.23270 0.94476 0.98462 1.01922 1.23241 0.96980 0.99194 0.89309 1.64704 1.04780 1.25720 1.27947 1.22030 0.89896 0.93956 1.02614 1.20647 0.85986 0.87969 0.82314 1.90442 1.84709 1.18017 1.56118 1.41985 1.10812 1.12237 1.57411 1.20533 0.90575 0.97671 1.44892 0.90762 1.27840 1.05886 0.96562 0.93882 1.70943 1.28552 1.09595 1.46501 0.82587 0.70191 0.73846 0.77786 1.19576 1.20253 1.19794 1.22933 0.93329 0.96874 0.95156 0.88353 0.87092 0.87840 0.74704 0.89280 0.89846 0.76030 0.88293 0.89621 0.90117 0.95514 0.91373 0.86801 0.78182 0.92967 0.91649 0.87173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.92 71.98 0.64 -0.97 16 2 C 0.29 3.74 2.47 29.85 0.07 3.82 16 3 F -0.19 -3.06 17.05 44.97 0.77 -2.29 16 4 F -0.19 -2.22 16.51 44.97 0.74 -1.48 16 5 C 0.49 8.11 7.23 87.66 0.63 8.74 16 6 O -0.53 -12.05 16.09 -3.01 -0.05 -12.10 16 7 N -0.70 -9.47 5.07 -463.06 -2.35 -11.82 16 8 C 0.11 1.74 4.50 86.38 0.39 2.12 16 9 C 0.13 2.34 1.06 -9.92 -0.01 2.33 16 10 O -0.56 -9.45 12.94 -148.98 -1.93 -11.38 16 11 C -0.14 -3.07 5.92 31.80 0.19 -2.88 16 12 C 0.04 1.31 5.30 86.65 0.46 1.77 16 13 N -0.51 -15.98 5.26 -887.57 -4.67 -20.65 16 14 C 0.05 1.60 5.52 85.56 0.47 2.07 16 15 C 0.44 20.92 7.49 87.66 0.66 21.58 16 16 O -0.61 -32.88 13.10 -3.05 -0.04 -32.92 16 17 N -0.59 -29.75 5.28 -306.98 -1.62 -31.37 16 18 C -0.41 -23.23 9.68 84.04 0.81 -22.42 16 19 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 20 C -0.04 -2.36 5.50 84.93 0.47 -1.90 16 21 N -0.92 -51.20 13.68 21.66 0.30 -50.90 16 22 Si 1.14 48.59 29.92 68.60 2.05 50.64 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 24 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C 0.05 1.03 6.17 86.44 0.53 1.56 16 27 H 0.10 0.98 7.87 -2.38 -0.02 0.96 16 28 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.42 3.78 6.78 -92.71 -0.63 3.16 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.56 8.11 -2.38 -0.02 1.54 16 33 H 0.39 3.54 7.78 -74.06 -0.58 2.96 16 34 H 0.10 1.65 8.08 -2.39 -0.02 1.63 16 35 H 0.09 1.85 7.84 -2.39 -0.02 1.83 16 36 H 0.08 3.29 5.97 -2.39 -0.01 3.28 16 37 H 0.03 0.92 8.02 -2.38 -0.02 0.90 16 38 H 0.07 2.13 7.81 -2.39 -0.02 2.11 16 39 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 40 H 0.38 17.97 6.73 -92.71 -0.62 17.35 16 41 H 0.26 14.02 6.78 -92.71 -0.63 13.39 16 42 H 0.07 1.51 7.39 -2.38 -0.02 1.49 16 43 H 0.11 2.14 7.69 -2.39 -0.02 2.12 16 Total: -1.00 -74.53 362.55 -2.08 -76.61 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.60 Total: 31.81 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 5.32 Total: 15.82 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -8.34 Total: -114.73 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -2.02 Total: -56.39 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 1.51 Total: -3.77 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Total: -74.53 -2.08 -76.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754747976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.501 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds