Wall clock time and date at job start Tue Mar 31 2020 19:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99769 * 2 1 4 4 C 1.53005 * 109.46839 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46973 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46765 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99489 * 180.02562 * 6 5 4 8 8 O 1.21723 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.46254 * 119.99939 * 180.02562 * 7 6 5 10 10 C 1.35024 * 120.00364 * 180.02562 * 9 7 6 11 11 C 1.46964 * 120.00242 * 179.97438 * 10 9 7 12 12 C 1.40026 * 120.07806 * 359.97438 * 11 10 9 13 13 C 1.37646 * 120.00173 * 180.02562 * 12 11 10 14 14 C 1.39052 * 120.16183 * 359.97438 * 13 12 11 15 15 O 1.35619 * 119.92417 * 180.02562 * 14 13 12 16 16 C 1.34761 * 116.99905 * 354.38688 * 15 14 13 17 17 H 1.08003 * 119.99699 * 5.05954 * 16 15 14 18 18 C 1.38705 * 119.99923 * 185.06430 * 16 15 14 19 19 N 1.31515 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99942 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47269 * 89.99262 * 20 18 16 22 22 H 1.48492 * 109.46887 * 209.99794 * 20 18 16 23 23 H 1.48499 * 109.46774 * 329.99672 * 20 18 16 24 24 C 1.39621 * 120.15726 * 0.02562 * 14 13 12 25 25 O 1.35956 * 120.00152 * 179.97438 * 24 14 13 26 26 C 1.42902 * 117.00228 * 179.97438 * 25 24 14 27 27 C 1.38074 * 119.99829 * 359.71971 * 24 14 13 28 28 H 1.08995 * 109.46812 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47283 * 300.00405 * 1 2 3 30 30 H 1.09000 * 109.46774 * 60.00198 * 1 2 3 31 31 H 1.09002 * 109.47284 * 59.99975 * 3 2 1 32 32 H 1.08993 * 109.47268 * 299.99567 * 3 2 1 33 33 H 1.09002 * 109.46958 * 60.00075 * 4 3 2 34 34 H 1.09002 * 109.46927 * 300.00259 * 4 3 2 35 35 H 1.09002 * 109.47263 * 60.00206 * 5 4 3 36 36 H 1.09002 * 109.47460 * 299.99877 * 5 4 3 37 37 H 0.96991 * 120.00092 * 0.02562 * 6 5 4 38 38 H 1.08009 * 119.99788 * 359.97438 * 9 7 6 39 39 H 1.07997 * 120.00071 * 359.97438 * 10 9 7 40 40 H 1.08002 * 120.00337 * 359.97438 * 12 11 10 41 41 H 1.08004 * 119.91822 * 179.97438 * 13 12 11 42 42 H 0.97001 * 119.99902 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47097 * 180.02562 * 26 25 24 44 44 H 1.08994 * 109.47139 * 300.00326 * 26 25 24 45 45 H 1.09000 * 109.46493 * 59.99908 * 26 25 24 46 46 H 1.08007 * 120.08397 * 180.27414 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6183 2.4666 0.0013 7 6 6.3822 3.5770 0.0023 8 8 5.8587 4.6759 0.0028 9 6 7.8401 3.4615 0.0018 10 6 8.6055 4.5739 0.0033 11 6 10.0706 4.4579 0.0033 12 6 10.6745 3.1945 0.0023 13 6 12.0468 3.0877 0.0028 14 6 12.8367 4.2321 0.0039 15 8 14.1883 4.1212 0.0039 16 6 14.7003 2.8801 0.1202 17 1 14.0430 2.0232 0.1258 18 6 16.0715 2.7033 0.2330 19 7 16.8718 3.7469 0.2259 20 14 16.7812 0.9830 0.3951 21 1 17.0723 0.4384 -0.9554 22 1 18.0356 1.0378 1.1877 23 1 15.7996 0.1053 1.0817 24 6 12.2415 5.4951 0.0050 25 8 13.0169 6.6119 0.0065 26 6 12.3410 7.8710 0.0070 27 6 10.8656 5.6099 -0.0009 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8575 0.6436 -0.8891 34 1 3.8568 0.6438 0.8909 35 1 3.8358 3.1230 0.8913 36 1 3.8366 3.1235 -0.8887 37 1 6.0354 1.5909 0.0005 38 1 8.3046 2.4864 0.0009 39 1 8.1411 5.5489 0.0046 40 1 10.0636 2.3039 0.0018 41 1 12.5112 2.1126 0.0024 42 1 17.8307 3.6232 0.3044 43 1 13.0745 8.6772 0.0078 44 1 11.7171 7.9488 -0.8834 45 1 11.7157 7.9472 0.8965 46 1 10.4038 6.5863 -0.0045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015437771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:06 Heat of formation + Delta-G solvation = -108.663397 kcal Electronic energy + Delta-G solvation = -26834.852769 eV Core-core repulsion = 22691.394286 eV Total energy + Delta-G solvation = -4143.458484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.80643 -39.51491 -38.39773 -37.68127 -36.61496 -35.53264 -33.07449 -32.37045 -32.00929 -29.75543 -28.77257 -27.51298 -26.58724 -25.70874 -25.18184 -23.20877 -22.06970 -21.77272 -20.88114 -19.23627 -18.21941 -17.76562 -17.14796 -16.82723 -16.75898 -16.21704 -15.67322 -15.40428 -15.34537 -15.21237 -15.08055 -14.72725 -14.22595 -14.13272 -13.99342 -13.60247 -13.55460 -13.45111 -12.79710 -12.39961 -12.32499 -12.28496 -12.13322 -11.82404 -11.71870 -11.55191 -11.49893 -11.45912 -11.12241 -11.03925 -10.79429 -10.70582 -10.51424 -10.14443 -9.85151 -9.59307 -9.44495 -9.16917 -8.83667 -7.99421 -6.92533 -6.62651 -4.13980 1.00969 2.10360 2.52300 2.95041 3.04455 3.05522 3.10469 3.52216 3.55777 3.82346 3.93562 4.45723 4.48714 4.58923 4.66286 4.87791 4.89120 4.91147 4.99093 5.01256 5.03114 5.09924 5.21222 5.21842 5.30611 5.43057 5.53849 5.56229 5.58735 5.67387 5.70084 5.73940 5.82702 5.98857 6.19512 6.30635 6.40900 6.46307 6.57628 6.67093 6.83325 6.99465 7.07768 7.24826 7.45822 7.51642 7.77788 8.06722 8.30932 8.80399 9.49117 10.53095 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.001814 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.081188 B =15434.252376 C =17372.012939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.132 4.132 5 C 0.124 3.876 6 N -0.734 5.734 7 C 0.556 3.444 8 O -0.560 6.560 9 C -0.279 4.279 10 C 0.037 3.963 11 C -0.167 4.167 12 C -0.059 4.059 13 C -0.225 4.225 14 C 0.148 3.852 15 O -0.147 6.147 16 C -0.391 4.391 17 H 0.098 0.902 18 C 0.042 3.958 19 N -0.844 5.844 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.265 1.265 24 C 0.052 3.948 25 O -0.304 6.304 26 C 0.030 3.970 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.402 0.598 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.138 0.862 42 H 0.274 0.726 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.079 -4.009 -0.254 23.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.170 4.170 5 C 0.000 4.000 6 N -0.386 5.386 7 C 0.348 3.652 8 O -0.440 6.440 9 C -0.300 4.300 10 C 0.017 3.983 11 C -0.169 4.169 12 C -0.077 4.077 13 C -0.245 4.245 14 C 0.092 3.908 15 O -0.048 6.048 16 C -0.466 4.466 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.476 5.476 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.189 1.189 24 C 0.007 3.993 25 O -0.218 6.218 26 C -0.066 4.066 27 C -0.155 4.155 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.649 -3.164 -0.252 22.870 hybrid contribution 0.011 -0.963 0.067 0.966 sum -22.638 -4.127 -0.184 23.012 Atomic orbital electron populations 1.22755 0.80733 1.02890 1.00113 1.87864 1.19949 1.27910 1.95476 1.22388 0.93352 0.84815 1.00736 1.21688 0.93838 0.97161 1.04266 1.21094 0.80333 0.96052 1.02512 1.45800 1.06273 1.09406 1.77092 1.18412 0.87931 0.83583 0.75278 1.90774 1.75468 1.26577 1.51206 1.22446 0.91418 0.99997 1.16179 1.22233 0.91878 0.98212 0.86008 1.18169 0.91292 0.92909 1.14496 1.20932 0.93933 0.95925 0.96928 1.20833 0.93254 0.98214 1.12165 1.18887 0.85307 0.90624 0.96023 1.83989 1.13950 1.31651 1.75205 1.21523 0.91518 0.81948 1.51658 0.88496 1.25413 0.94979 1.00063 0.96078 1.70045 1.04590 1.29902 1.43066 0.85647 0.78871 0.79715 0.78878 1.19627 1.20045 1.18916 1.18044 0.88964 0.85011 1.07298 1.86236 1.33739 1.12058 1.89719 1.22918 0.98458 0.84777 1.00425 1.20885 0.91213 0.98320 1.05128 0.89516 0.93951 0.93960 0.92869 0.92863 0.90258 0.90261 0.91460 0.91470 0.76396 0.85724 0.85988 0.86581 0.84498 0.91575 0.88958 0.93451 0.93423 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.27 10.70 -35.23 -0.38 -3.65 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.13 -0.89 5.70 -26.73 -0.15 -1.05 16 5 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 6 N -0.73 -7.41 5.55 -61.75 -0.34 -7.76 16 7 C 0.56 7.71 7.74 -13.04 -0.10 7.61 16 8 O -0.56 -9.69 16.23 5.17 0.08 -9.61 16 9 C -0.28 -3.79 9.41 -37.51 -0.35 -4.14 16 10 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 11 C -0.17 -2.88 5.87 -105.04 -0.62 -3.49 16 12 C -0.06 -1.03 9.40 -39.13 -0.37 -1.39 16 13 C -0.23 -4.62 9.14 -39.50 -0.36 -4.98 16 14 C 0.15 3.53 6.67 -38.76 -0.26 3.27 16 15 O -0.15 -4.12 9.52 -13.96 -0.13 -4.25 16 16 C -0.39 -10.45 9.48 30.91 0.29 -10.16 16 17 H 0.10 2.34 5.18 -52.48 -0.27 2.07 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.84 -23.89 13.67 55.48 0.76 -23.13 16 20 Si 0.95 19.45 29.55 -169.99 -5.02 14.43 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 C 0.05 1.11 6.70 -39.13 -0.26 0.85 16 25 O -0.30 -6.47 10.28 -34.21 -0.35 -6.82 16 26 C 0.03 0.44 9.81 101.05 0.99 1.43 16 27 C -0.14 -2.45 8.77 -38.99 -0.34 -2.79 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 3.04 8.45 -40.82 -0.34 2.70 16 38 H 0.13 1.45 6.06 -52.48 -0.32 1.13 16 39 H 0.12 1.83 7.52 -52.49 -0.39 1.43 16 40 H 0.12 1.65 6.15 -52.49 -0.32 1.33 16 41 H 0.14 2.73 5.62 -52.48 -0.29 2.43 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 45 H 0.05 0.62 7.67 -51.93 -0.40 0.23 16 46 H 0.12 1.87 6.28 -52.48 -0.33 1.54 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -33.54 393.39 -6.56 -40.09 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.43 Total: 5.41 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -0.67 Total: -10.65 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.42 Total: -30.89 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.78 Total: -24.33 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.54 -6.56 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015437771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.569 kcal (2) G-P(sol) polarization free energy of solvation -33.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds