Wall clock time and date at job start Tue Mar 31 2020 19:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99769 * 2 1 4 4 C 1.53005 * 109.46839 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46973 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46765 * 180.02562 * 5 4 3 7 7 C 1.34776 * 119.99489 * 180.02562 * 6 5 4 8 8 O 1.21723 * 120.00380 * 359.97438 * 7 6 5 9 9 C 1.46254 * 119.99939 * 180.02562 * 7 6 5 10 10 C 1.35024 * 120.00364 * 180.02562 * 9 7 6 11 11 C 1.46964 * 120.00242 * 179.97438 * 10 9 7 12 12 C 1.40026 * 120.07806 * 359.97438 * 11 10 9 13 13 C 1.37646 * 120.00173 * 180.02562 * 12 11 10 14 14 C 1.39052 * 120.16183 * 359.97438 * 13 12 11 15 15 O 1.35619 * 119.92417 * 180.02562 * 14 13 12 16 16 C 1.34761 * 116.99905 * 354.38688 * 15 14 13 17 17 H 1.08003 * 119.99699 * 5.05954 * 16 15 14 18 18 C 1.38705 * 119.99923 * 185.06430 * 16 15 14 19 19 N 1.31515 * 120.00061 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99942 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47269 * 89.99262 * 20 18 16 22 22 H 1.48492 * 109.46887 * 209.99794 * 20 18 16 23 23 H 1.48499 * 109.46774 * 329.99672 * 20 18 16 24 24 C 1.39621 * 120.15726 * 0.02562 * 14 13 12 25 25 O 1.35956 * 120.00152 * 179.97438 * 24 14 13 26 26 C 1.42902 * 117.00228 * 179.97438 * 25 24 14 27 27 C 1.38074 * 119.99829 * 359.71971 * 24 14 13 28 28 H 1.08995 * 109.46812 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47283 * 300.00405 * 1 2 3 30 30 H 1.09000 * 109.46774 * 60.00198 * 1 2 3 31 31 H 1.09002 * 109.47284 * 59.99975 * 3 2 1 32 32 H 1.08993 * 109.47268 * 299.99567 * 3 2 1 33 33 H 1.09002 * 109.46958 * 60.00075 * 4 3 2 34 34 H 1.09002 * 109.46927 * 300.00259 * 4 3 2 35 35 H 1.09002 * 109.47263 * 60.00206 * 5 4 3 36 36 H 1.09002 * 109.47460 * 299.99877 * 5 4 3 37 37 H 0.96991 * 120.00092 * 0.02562 * 6 5 4 38 38 H 1.08009 * 119.99788 * 359.97438 * 9 7 6 39 39 H 1.07997 * 120.00071 * 359.97438 * 10 9 7 40 40 H 1.08002 * 120.00337 * 359.97438 * 12 11 10 41 41 H 1.08004 * 119.91822 * 179.97438 * 13 12 11 42 42 H 0.97001 * 119.99902 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47097 * 180.02562 * 26 25 24 44 44 H 1.08994 * 109.47139 * 300.00326 * 26 25 24 45 45 H 1.09000 * 109.46493 * 59.99908 * 26 25 24 46 46 H 1.08007 * 120.08397 * 180.27414 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6183 2.4666 0.0013 7 6 6.3822 3.5770 0.0023 8 8 5.8587 4.6759 0.0028 9 6 7.8401 3.4615 0.0018 10 6 8.6055 4.5739 0.0033 11 6 10.0706 4.4579 0.0033 12 6 10.6745 3.1945 0.0023 13 6 12.0468 3.0877 0.0028 14 6 12.8367 4.2321 0.0039 15 8 14.1883 4.1212 0.0039 16 6 14.7003 2.8801 0.1202 17 1 14.0430 2.0232 0.1258 18 6 16.0715 2.7033 0.2330 19 7 16.8718 3.7469 0.2259 20 14 16.7812 0.9830 0.3951 21 1 17.0723 0.4384 -0.9554 22 1 18.0356 1.0378 1.1877 23 1 15.7996 0.1053 1.0817 24 6 12.2415 5.4951 0.0050 25 8 13.0169 6.6119 0.0065 26 6 12.3410 7.8710 0.0070 27 6 10.8656 5.6099 -0.0009 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8575 0.6436 -0.8891 34 1 3.8568 0.6438 0.8909 35 1 3.8358 3.1230 0.8913 36 1 3.8366 3.1235 -0.8887 37 1 6.0354 1.5909 0.0005 38 1 8.3046 2.4864 0.0009 39 1 8.1411 5.5489 0.0046 40 1 10.0636 2.3039 0.0018 41 1 12.5112 2.1126 0.0024 42 1 17.8307 3.6232 0.3044 43 1 13.0745 8.6772 0.0078 44 1 11.7171 7.9488 -0.8834 45 1 11.7157 7.9472 0.8965 46 1 10.4038 6.5863 -0.0045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015437771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:06 Heat of formation + Delta-G solvation = -132.402791 kcal Electronic energy + Delta-G solvation = -26835.882187 eV Core-core repulsion = 22691.394286 eV Total energy + Delta-G solvation = -4144.487901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31909 -40.66205 -39.31004 -38.95097 -38.09939 -36.42258 -34.62268 -33.92301 -32.87765 -31.27297 -30.14795 -28.24101 -27.74398 -27.33771 -26.08698 -24.40838 -23.32179 -22.72981 -22.15538 -20.43130 -19.93513 -19.31696 -18.22667 -17.80205 -17.41700 -17.30552 -16.98121 -16.67765 -16.46542 -16.30563 -16.19984 -15.74015 -15.56953 -15.50945 -15.27691 -15.03086 -14.94407 -14.67975 -13.90678 -13.65520 -13.43960 -13.28438 -13.22786 -12.94449 -12.86136 -12.74385 -12.68499 -12.47322 -12.15980 -12.13327 -12.06045 -12.04832 -12.00901 -11.33699 -11.00048 -10.98673 -10.63278 -10.52656 -10.07896 -9.47019 -8.52758 -8.46524 -6.11173 -0.30420 0.55079 1.11359 1.37674 1.48277 1.55718 2.15510 2.17798 2.35656 2.55558 2.87076 2.91859 3.15071 3.36200 3.73845 3.93344 3.95282 4.03589 4.15057 4.16262 4.27509 4.33555 4.40542 4.42255 4.44635 4.50206 4.51915 4.53368 4.57178 4.63339 4.70110 4.71324 4.87068 4.91366 5.07856 5.09680 5.09746 5.13620 5.29783 5.43687 5.49525 5.52291 5.78313 5.92556 5.98498 6.20441 6.59062 6.60166 6.95932 7.27224 7.76087 8.75117 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.001814 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.081188 B =15434.252376 C =17372.012939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.061 3.939 4 C -0.120 4.120 5 C 0.125 3.875 6 N -0.716 5.716 7 C 0.550 3.450 8 O -0.594 6.594 9 C -0.238 4.238 10 C 0.012 3.988 11 C -0.133 4.133 12 C -0.065 4.065 13 C -0.218 4.218 14 C 0.100 3.900 15 O -0.213 6.213 16 C -0.416 4.416 17 H 0.111 0.889 18 C -0.022 4.022 19 N -0.914 5.914 20 Si 1.021 2.979 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.248 1.248 24 C 0.038 3.962 25 O -0.344 6.344 26 C 0.020 3.980 27 C -0.134 4.134 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.153 0.847 39 H 0.127 0.873 40 H 0.159 0.841 41 H 0.138 0.862 42 H 0.273 0.727 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.504 -5.763 -0.212 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.158 4.158 5 C 0.001 3.999 6 N -0.367 5.367 7 C 0.341 3.659 8 O -0.477 6.477 9 C -0.259 4.259 10 C -0.008 4.008 11 C -0.134 4.134 12 C -0.083 4.083 13 C -0.237 4.237 14 C 0.048 3.952 15 O -0.118 6.118 16 C -0.491 4.491 17 H 0.128 0.872 18 C -0.220 4.220 19 N -0.551 5.551 20 Si 0.840 3.160 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.171 1.171 24 C -0.007 4.007 25 O -0.260 6.260 26 C -0.074 4.074 27 C -0.153 4.153 28 H 0.114 0.886 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.255 0.745 38 H 0.171 0.829 39 H 0.144 0.856 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.128 0.872 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -27.186 -4.947 -0.213 27.633 hybrid contribution 0.595 -0.298 0.035 0.666 sum -26.591 -5.245 -0.178 27.104 Atomic orbital electron populations 1.22923 0.79436 1.03817 1.00902 1.87818 1.21496 1.28695 1.95649 1.22446 0.93215 0.84556 1.01405 1.21564 0.93874 0.95759 1.04627 1.21157 0.79324 0.97264 1.02185 1.45721 1.06903 1.09269 1.74832 1.18508 0.88227 0.83848 0.75337 1.90780 1.76037 1.28154 1.52761 1.22810 0.91424 1.00741 1.10880 1.22128 0.90393 0.99315 0.88979 1.18545 0.92533 0.92546 1.09793 1.21303 0.92818 0.97692 0.96511 1.21043 0.94559 0.97379 1.10752 1.19594 0.84892 0.92835 0.97845 1.83977 1.15938 1.32167 1.79739 1.21995 0.92299 0.82457 1.52396 0.87228 1.26680 0.95107 1.04589 0.95645 1.70205 1.04690 1.32649 1.47535 0.84554 0.78049 0.74243 0.79168 1.18762 1.19885 1.17109 1.18379 0.90188 0.84733 1.07394 1.86190 1.35991 1.13880 1.89893 1.23275 0.99447 0.82623 1.02079 1.21262 0.89824 1.00353 1.03882 0.88640 0.93164 0.93170 0.92251 0.92237 0.89869 0.89884 0.91824 0.91824 0.74547 0.82919 0.85550 0.82388 0.84495 0.91776 0.87230 0.91587 0.91647 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.46 16 2 O -0.42 -5.98 10.70 -148.98 -1.59 -7.57 16 3 C 0.06 0.66 5.94 71.98 0.43 1.09 16 4 C -0.12 -1.24 5.70 30.59 0.17 -1.06 16 5 C 0.12 1.75 5.67 86.38 0.49 2.24 16 6 N -0.72 -11.33 5.55 -467.49 -2.60 -13.93 16 7 C 0.55 12.89 7.74 86.33 0.67 13.55 16 8 O -0.59 -18.64 16.23 -4.42 -0.07 -18.71 16 9 C -0.24 -5.21 9.41 23.61 0.22 -4.98 16 10 C 0.01 0.31 9.45 23.82 0.23 0.53 16 11 C -0.13 -4.14 5.87 -20.14 -0.12 -4.25 16 12 C -0.07 -2.07 9.40 22.56 0.21 -1.86 16 13 C -0.22 -8.92 9.14 22.32 0.20 -8.72 16 14 C 0.10 4.99 6.67 22.80 0.15 5.14 16 15 O -0.21 -12.85 9.52 -6.62 -0.06 -12.91 16 16 C -0.42 -23.67 9.48 67.93 0.64 -23.03 16 17 H 0.11 5.54 5.18 -2.91 -0.02 5.53 16 18 C -0.02 -1.22 5.49 84.85 0.47 -0.75 16 19 N -0.91 -55.92 13.67 21.62 0.30 -55.62 16 20 Si 1.02 41.63 29.55 68.60 2.03 43.65 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 24 C 0.04 1.66 6.70 22.56 0.15 1.81 16 25 O -0.34 -15.25 10.28 -79.08 -0.81 -16.06 16 26 C 0.02 0.58 9.81 113.37 1.11 1.69 16 27 C -0.13 -4.59 8.77 22.65 0.20 -4.39 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.42 4.17 8.45 -92.72 -0.78 3.38 16 38 H 0.15 2.51 6.06 -2.91 -0.02 2.49 16 39 H 0.13 3.29 7.52 -2.91 -0.02 3.27 16 40 H 0.16 3.62 6.15 -2.91 -0.02 3.60 16 41 H 0.14 5.49 5.62 -2.91 -0.02 5.48 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.07 1.62 7.65 -2.39 -0.02 1.60 16 45 H 0.06 1.62 7.67 -2.39 -0.02 1.60 16 46 H 0.16 4.22 6.28 -2.91 -0.02 4.20 16 Total: -1.00 -80.49 393.39 3.89 -76.60 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.23 Total: 26.09 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 6.48 Total: -21.53 kcal Atomic # 7 Polarization: -67.25 SS G_CDS: -2.30 Total: -69.55 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -2.54 Total: -55.26 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -80.49 3.89 -76.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015437771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.804 kcal (2) G-P(sol) polarization free energy of solvation -80.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds