Wall clock time and date at job start Tue Mar 31 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46844 * 111.00063 * 2 1 4 4 C 1.53030 * 109.52483 * 185.83707 * 3 2 1 5 5 C 1.53124 * 109.27754 * 300.82119 * 4 3 2 6 6 N 1.46510 * 109.52275 * 177.55867 * 5 4 3 7 7 C 1.34777 * 119.99660 * 154.99444 * 6 5 4 8 8 S 1.71200 * 120.00053 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99410 * 179.97438 * 7 6 5 10 10 C 1.39965 * 119.99619 * 175.80201 * 9 7 6 11 11 C 1.38925 * 120.00504 * 44.60581 * 10 9 7 12 12 C 1.38003 * 119.99911 * 180.02562 * 11 10 9 13 13 C 1.38908 * 120.00380 * 0.02562 * 12 11 10 14 14 O 1.35774 * 120.00003 * 179.97438 * 13 12 11 15 15 C 1.34818 * 117.00011 * 6.55271 * 14 13 12 16 16 H 1.07998 * 120.00225 * 5.48727 * 15 14 13 17 17 C 1.38632 * 119.99976 * 185.48491 * 15 14 13 18 18 N 1.31572 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99644 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47314 * 90.00132 * 19 17 15 21 21 H 1.48504 * 109.46784 * 209.99933 * 19 17 15 22 22 H 1.48496 * 109.47042 * 329.99427 * 19 17 15 23 23 C 1.38907 * 120.00377 * 0.23666 * 13 12 11 24 24 C 1.38004 * 119.99870 * 359.48121 * 23 13 12 25 25 C 1.53114 * 109.16209 * 57.65440 * 5 4 3 26 26 C 1.46845 * 110.99583 * 124.20567 * 2 1 3 27 27 H 1.09001 * 109.46853 * 60.00358 * 1 2 3 28 28 H 1.09001 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46986 * 300.00488 * 1 2 3 30 30 H 1.08997 * 109.46540 * 65.81952 * 3 2 1 31 31 H 1.09005 * 109.45182 * 305.84895 * 3 2 1 32 32 H 1.08994 * 109.50747 * 180.87796 * 4 3 2 33 33 H 1.09000 * 109.53564 * 60.77615 * 4 3 2 34 34 H 1.09003 * 109.51917 * 297.67879 * 5 4 3 35 35 H 0.96997 * 119.99482 * 334.99706 * 6 5 4 36 36 H 0.96999 * 120.00677 * 355.79939 * 9 7 6 37 37 H 1.07995 * 120.00000 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.99842 * 179.97438 * 12 11 10 39 39 H 0.96996 * 119.99898 * 180.02562 * 18 17 15 40 40 H 1.07991 * 119.99967 * 179.74849 * 23 13 12 41 41 H 1.08003 * 120.00092 * 180.25879 * 24 23 13 42 42 H 1.08998 * 109.50674 * 62.28662 * 25 5 4 43 43 H 1.08999 * 109.50284 * 182.40881 * 25 5 4 44 44 H 1.09000 * 109.46540 * 294.17654 * 26 2 1 45 45 H 1.09004 * 109.46442 * 54.14703 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0145 6 7 5.5717 0.4488 0.8481 7 6 6.3631 0.2635 1.9232 8 16 5.6705 0.1305 3.4832 9 7 7.6996 0.1819 1.7700 10 6 8.5277 0.0778 2.8936 11 6 8.1948 -0.7930 3.9236 12 6 9.0111 -0.8952 5.0317 13 6 10.1653 -0.1270 5.1174 14 8 10.9680 -0.2273 6.2078 15 6 10.6633 -1.1852 7.1062 16 1 9.8686 -1.8866 6.8992 17 6 11.3701 -1.2699 8.2958 18 7 12.3380 -0.4151 8.5482 19 14 10.9484 -2.5977 9.5402 20 1 11.7567 -3.8118 9.2618 21 1 11.2484 -2.1063 10.9091 22 1 9.5046 -2.9302 9.4391 23 6 10.4954 0.7477 4.0901 24 6 9.6823 0.8457 2.9793 25 6 3.5182 -0.8715 1.0210 26 6 1.9952 -0.7707 1.1338 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7325 1.8609 0.9375 31 1 1.5635 1.9255 -0.8331 32 1 3.9099 2.3511 -0.1310 33 1 3.7820 0.8570 -1.0905 34 1 3.8896 1.0362 1.9560 35 1 5.9640 0.5239 -0.0358 36 1 8.0877 0.1953 0.8811 37 1 7.2968 -1.3893 3.8576 38 1 8.7521 -1.5719 5.8326 39 1 12.8328 -0.4747 9.3804 40 1 11.3905 1.3478 4.1586 41 1 9.9411 1.5228 2.1786 42 1 3.7814 -1.3837 0.0955 43 1 3.9098 -1.4302 1.8710 44 1 1.7324 -0.2707 2.0661 45 1 1.5634 -1.7715 1.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063144546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:56 Heat of formation + Delta-G solvation = 30.035514 kcal Electronic energy + Delta-G solvation = -25670.163318 eV Core-core repulsion = 22007.764892 eV Total energy + Delta-G solvation = -3662.398425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10257 -39.33773 -38.22293 -36.68236 -34.75679 -32.35893 -31.88156 -31.26010 -30.22805 -28.09527 -26.52097 -25.25593 -24.31379 -23.49095 -22.87616 -21.88574 -21.33225 -20.26333 -18.56257 -17.94202 -17.85757 -16.76100 -16.16032 -15.67870 -15.50309 -15.27491 -15.04200 -14.72757 -14.48314 -14.35248 -13.69283 -13.60569 -13.59990 -13.39673 -12.85264 -12.82014 -12.73410 -12.58412 -12.13263 -11.69765 -11.66571 -11.57458 -11.50843 -11.43922 -11.08504 -10.97601 -10.82896 -10.78659 -10.67157 -10.41353 -9.51928 -9.32984 -8.76792 -8.73688 -8.29241 -7.64625 -7.16044 -6.63332 -6.44480 -4.01211 1.33704 2.03319 2.25433 2.41109 2.68990 3.16271 3.17945 3.22879 3.51698 3.55352 3.99470 4.27866 4.46345 4.57838 4.62482 4.78607 4.91198 5.08085 5.09457 5.11901 5.13181 5.20722 5.23288 5.34687 5.45029 5.49026 5.55573 5.62885 5.65346 5.73333 5.82739 5.88401 6.00508 6.16385 6.29427 6.42106 6.57947 6.63971 6.67562 6.80532 6.94325 7.05089 7.18718 7.31042 7.46394 7.53438 7.83842 8.01506 9.01488 9.69943 10.73148 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002246 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.693070 B =12462.892489 C =13420.955673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.060 3.940 4 C -0.124 4.124 5 C 0.147 3.853 6 N -0.688 5.688 7 C 0.554 3.446 8 S -0.630 6.630 9 N -0.607 5.607 10 C 0.002 3.998 11 C -0.012 4.012 12 C -0.230 4.230 13 C 0.162 3.838 14 O -0.172 6.172 15 C -0.388 4.388 16 H 0.094 0.906 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.192 4.192 24 C -0.071 4.071 25 C -0.126 4.126 26 C 0.059 3.941 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.394 0.606 36 H 0.397 0.603 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.270 0.730 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.089 1.513 -20.840 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.068 4.068 4 C -0.163 4.163 5 C 0.042 3.958 6 N -0.318 5.318 7 C 0.195 3.805 8 S -0.500 6.500 9 N -0.229 5.229 10 C -0.090 4.090 11 C -0.034 4.034 12 C -0.250 4.250 13 C 0.107 3.893 14 O -0.075 6.075 15 C -0.464 4.464 16 H 0.112 0.888 17 C -0.166 4.166 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.212 4.212 24 C -0.091 4.091 25 C -0.165 4.165 26 C -0.069 4.069 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.229 0.771 36 H 0.233 0.767 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.111 1.395 -19.864 26.917 hybrid contribution 0.183 -0.044 -0.332 0.382 sum -17.928 1.351 -20.197 27.040 Atomic orbital electron populations 1.22348 0.87070 1.02249 1.00705 1.61993 1.07790 1.13499 1.43838 1.21989 0.94063 0.89581 1.01178 1.21880 0.95417 1.00501 0.98471 1.21438 0.75801 0.97460 1.01114 1.44986 1.07762 1.71948 1.07132 1.22438 0.84052 0.80583 0.93425 1.93437 1.75851 1.73396 1.07344 1.42088 1.02728 1.68402 1.09662 1.16938 0.94897 1.06235 0.90922 1.21038 0.96538 0.94283 0.91566 1.21018 0.96759 1.06612 1.00654 1.19472 0.89157 0.92563 0.88110 1.83980 1.46365 1.50419 1.26729 1.21374 1.20095 1.07489 0.97432 0.88819 1.25313 0.95683 0.98449 0.97112 1.70046 1.19735 1.34813 1.24937 0.85703 0.79236 0.79448 0.79060 1.19868 1.20264 1.18999 1.19886 1.02887 1.04662 0.93806 1.20303 0.94219 0.97120 0.97470 1.21966 0.94407 0.96668 1.03449 1.22047 0.94829 0.98507 0.91505 0.91388 0.91250 0.95461 0.94174 0.90202 0.90701 0.90646 0.86881 0.77053 0.76655 0.84717 0.85112 0.91986 0.86094 0.87108 0.91406 0.89378 0.94003 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.59 60.07 0.58 0.72 16 2 N -0.55 -4.08 4.91 -242.95 -1.19 -5.28 16 3 C 0.06 0.40 5.46 -3.84 -0.02 0.38 16 4 C -0.12 -0.81 5.57 -26.65 -0.15 -0.95 16 5 C 0.15 1.32 2.28 -67.80 -0.15 1.16 16 6 N -0.69 -6.23 5.09 -55.39 -0.28 -6.51 16 7 C 0.55 7.38 7.82 -86.92 -0.68 6.70 16 8 S -0.63 -11.52 23.61 -107.50 -2.54 -14.05 16 9 N -0.61 -7.75 5.32 -11.36 -0.06 -7.81 16 10 C 0.00 0.04 5.96 -83.63 -0.50 -0.46 16 11 C -0.01 -0.24 7.86 -39.41 -0.31 -0.55 16 12 C -0.23 -5.17 9.12 -39.42 -0.36 -5.53 16 13 C 0.16 3.92 6.65 -39.09 -0.26 3.66 16 14 O -0.17 -4.91 9.75 0.01 0.00 -4.91 16 15 C -0.39 -10.88 9.43 30.88 0.29 -10.58 16 16 H 0.09 2.45 5.31 -52.49 -0.28 2.17 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 19 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.19 -3.97 9.98 -39.42 -0.39 -4.36 16 24 C -0.07 -1.21 9.96 -39.41 -0.39 -1.60 16 25 C -0.13 -1.15 5.63 -26.65 -0.15 -1.30 16 26 C 0.06 0.49 5.46 -3.83 -0.02 0.47 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.11 1.34 6.81 -51.93 -0.35 0.99 16 35 H 0.39 2.32 8.62 -40.82 -0.35 1.97 16 36 H 0.40 3.49 8.84 -40.82 -0.36 3.13 16 37 H 0.14 2.66 6.01 -42.02 -0.25 2.41 16 38 H 0.13 3.00 5.72 -52.48 -0.30 2.70 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.02 7.52 -51.93 -0.39 0.63 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -33.60 374.05 -11.81 -45.41 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.49 Total: 7.54 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.62 Total: -11.27 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.78 Total: -44.09 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: 0.00 Total: -4.91 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -11.52 SS G_CDS: -2.54 Total: -14.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.60 -11.81 -45.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063144546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.447 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds