Wall clock time and date at job start Tue Mar 31 2020 18:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46844 * 111.00063 * 2 1 4 4 C 1.53030 * 109.52483 * 185.83707 * 3 2 1 5 5 C 1.53124 * 109.27754 * 300.82119 * 4 3 2 6 6 N 1.46510 * 109.52275 * 177.55867 * 5 4 3 7 7 C 1.34777 * 119.99660 * 154.99444 * 6 5 4 8 8 S 1.71200 * 120.00053 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99410 * 179.97438 * 7 6 5 10 10 C 1.39965 * 119.99619 * 175.80201 * 9 7 6 11 11 C 1.38925 * 120.00504 * 44.60581 * 10 9 7 12 12 C 1.38003 * 119.99911 * 180.02562 * 11 10 9 13 13 C 1.38908 * 120.00380 * 0.02562 * 12 11 10 14 14 O 1.35774 * 120.00003 * 179.97438 * 13 12 11 15 15 C 1.34818 * 117.00011 * 6.55271 * 14 13 12 16 16 H 1.07998 * 120.00225 * 5.48727 * 15 14 13 17 17 C 1.38632 * 119.99976 * 185.48491 * 15 14 13 18 18 N 1.31572 * 120.00020 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99644 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47314 * 90.00132 * 19 17 15 21 21 H 1.48504 * 109.46784 * 209.99933 * 19 17 15 22 22 H 1.48496 * 109.47042 * 329.99427 * 19 17 15 23 23 C 1.38907 * 120.00377 * 0.23666 * 13 12 11 24 24 C 1.38004 * 119.99870 * 359.48121 * 23 13 12 25 25 C 1.53114 * 109.16209 * 57.65440 * 5 4 3 26 26 C 1.46845 * 110.99583 * 124.20567 * 2 1 3 27 27 H 1.09001 * 109.46853 * 60.00358 * 1 2 3 28 28 H 1.09001 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46986 * 300.00488 * 1 2 3 30 30 H 1.08997 * 109.46540 * 65.81952 * 3 2 1 31 31 H 1.09005 * 109.45182 * 305.84895 * 3 2 1 32 32 H 1.08994 * 109.50747 * 180.87796 * 4 3 2 33 33 H 1.09000 * 109.53564 * 60.77615 * 4 3 2 34 34 H 1.09003 * 109.51917 * 297.67879 * 5 4 3 35 35 H 0.96997 * 119.99482 * 334.99706 * 6 5 4 36 36 H 0.96999 * 120.00677 * 355.79939 * 9 7 6 37 37 H 1.07995 * 120.00000 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.99842 * 179.97438 * 12 11 10 39 39 H 0.96996 * 119.99898 * 180.02562 * 18 17 15 40 40 H 1.07991 * 119.99967 * 179.74849 * 23 13 12 41 41 H 1.08003 * 120.00092 * 180.25879 * 24 23 13 42 42 H 1.08998 * 109.50674 * 62.28662 * 25 5 4 43 43 H 1.08999 * 109.50284 * 182.40881 * 25 5 4 44 44 H 1.09000 * 109.46540 * 294.17654 * 26 2 1 45 45 H 1.09004 * 109.46442 * 54.14703 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0145 6 7 5.5717 0.4488 0.8481 7 6 6.3631 0.2635 1.9232 8 16 5.6705 0.1305 3.4832 9 7 7.6996 0.1819 1.7700 10 6 8.5277 0.0778 2.8936 11 6 8.1948 -0.7930 3.9236 12 6 9.0111 -0.8952 5.0317 13 6 10.1653 -0.1270 5.1174 14 8 10.9680 -0.2273 6.2078 15 6 10.6633 -1.1852 7.1062 16 1 9.8686 -1.8866 6.8992 17 6 11.3701 -1.2699 8.2958 18 7 12.3380 -0.4151 8.5482 19 14 10.9484 -2.5977 9.5402 20 1 11.7567 -3.8118 9.2618 21 1 11.2484 -2.1063 10.9091 22 1 9.5046 -2.9302 9.4391 23 6 10.4954 0.7477 4.0901 24 6 9.6823 0.8457 2.9793 25 6 3.5182 -0.8715 1.0210 26 6 1.9952 -0.7707 1.1338 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7325 1.8609 0.9375 31 1 1.5635 1.9255 -0.8331 32 1 3.9099 2.3511 -0.1310 33 1 3.7820 0.8570 -1.0905 34 1 3.8896 1.0362 1.9560 35 1 5.9640 0.5239 -0.0358 36 1 8.0877 0.1953 0.8811 37 1 7.2968 -1.3893 3.8576 38 1 8.7521 -1.5719 5.8326 39 1 12.8328 -0.4747 9.3804 40 1 11.3905 1.3478 4.1586 41 1 9.9411 1.5228 2.1786 42 1 3.7814 -1.3837 0.0955 43 1 3.9098 -1.4302 1.8710 44 1 1.7324 -0.2707 2.0661 45 1 1.5634 -1.7715 1.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063144546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:55 Heat of formation + Delta-G solvation = 6.719002 kcal Electronic energy + Delta-G solvation = -25671.174397 eV Core-core repulsion = 22007.764892 eV Total energy + Delta-G solvation = -3663.409505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.27057 -40.58289 -39.57143 -37.98366 -35.99782 -34.22839 -32.87351 -31.89976 -31.87310 -29.56902 -27.48518 -27.03905 -25.43444 -24.20709 -23.80489 -23.34048 -22.79961 -21.05688 -20.09399 -19.48154 -19.10646 -18.44942 -17.16419 -16.82449 -16.49731 -16.28084 -16.11198 -16.00554 -15.70229 -15.49710 -15.28261 -15.21387 -14.74021 -14.41078 -14.33883 -14.05270 -13.54257 -13.42576 -13.36958 -13.19943 -13.06968 -12.70766 -12.49641 -12.44451 -12.29315 -12.21025 -12.17207 -12.12969 -11.77747 -11.54898 -11.26534 -10.87318 -10.42070 -9.89717 -9.33909 -9.07575 -8.79096 -8.46765 -8.13949 -6.12905 0.06869 0.62980 0.74441 0.93761 1.35997 1.43489 1.49601 1.53309 2.18826 2.54553 2.82353 2.96615 3.17605 3.51158 3.62919 3.77825 4.03552 4.12509 4.13701 4.18304 4.32625 4.41898 4.49665 4.50512 4.54072 4.56697 4.64971 4.73275 4.75550 4.87748 4.93249 4.95793 5.04981 5.06349 5.08130 5.11816 5.19566 5.32350 5.40246 5.50457 5.62313 5.75207 5.92152 6.04072 6.05631 6.09489 6.23430 6.44231 6.98503 7.77009 8.75920 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022293 B = 0.002246 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.693070 B =12462.892489 C =13420.955673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.549 5.549 3 C 0.057 3.943 4 C -0.113 4.113 5 C 0.146 3.854 6 N -0.653 5.653 7 C 0.581 3.419 8 S -0.726 6.726 9 N -0.594 5.594 10 C 0.035 3.965 11 C -0.017 4.017 12 C -0.241 4.241 13 C 0.126 3.874 14 O -0.224 6.224 15 C -0.410 4.410 16 H 0.098 0.902 17 C -0.021 4.021 18 N -0.917 5.917 19 Si 1.015 2.985 20 H -0.260 1.260 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.198 4.198 24 C -0.053 4.053 25 C -0.118 4.118 26 C 0.063 3.937 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.419 0.581 36 H 0.426 0.574 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.273 0.727 40 H 0.128 0.872 41 H 0.164 0.836 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.716 1.935 -25.214 32.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.274 5.274 3 C -0.071 4.071 4 C -0.152 4.152 5 C 0.041 3.959 6 N -0.282 5.282 7 C 0.218 3.782 8 S -0.597 6.597 9 N -0.219 5.219 10 C -0.058 4.058 11 C -0.039 4.039 12 C -0.262 4.262 13 C 0.074 3.926 14 O -0.130 6.130 15 C -0.486 4.486 16 H 0.115 0.885 17 C -0.219 4.219 18 N -0.554 5.554 19 Si 0.834 3.166 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.218 4.218 24 C -0.073 4.073 25 C -0.157 4.157 26 C -0.066 4.066 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.259 0.741 36 H 0.268 0.732 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.793 1.831 -24.384 31.459 hybrid contribution 0.397 -0.064 0.559 0.689 sum -19.396 1.767 -23.825 30.772 Atomic orbital electron populations 1.22409 0.86178 1.02722 1.01195 1.62043 1.08674 1.13845 1.42805 1.22083 0.94288 0.89261 1.01487 1.21842 0.95006 1.00759 0.97556 1.21499 0.75315 0.97696 1.01352 1.44918 1.07701 1.68456 1.07107 1.21761 0.84132 0.79713 0.92590 1.93804 1.77282 1.77114 1.11506 1.41705 1.01965 1.68428 1.09793 1.16943 0.94611 1.03471 0.90811 1.21106 0.95949 0.95187 0.91704 1.20987 0.97139 1.06595 1.01442 1.20009 0.89861 0.94418 0.88273 1.83941 1.48677 1.51901 1.28506 1.21759 1.20512 1.08245 0.98092 0.88482 1.26526 0.95398 1.01021 0.98911 1.70174 1.21746 1.37542 1.25980 0.84636 0.79312 0.76472 0.76134 1.18462 1.19447 1.18245 1.20208 1.03788 1.03844 0.93931 1.20713 0.92746 0.96594 0.97249 1.21845 0.94929 0.96275 1.02682 1.21966 0.94353 0.98900 0.91362 0.89977 0.90890 0.95845 0.95257 0.88241 0.89425 0.88864 0.89693 0.74050 0.73201 0.84664 0.86900 0.91786 0.85445 0.81840 0.90228 0.92179 0.95656 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.59 127.69 1.22 1.45 16 2 N -0.55 -6.87 4.91 -922.57 -4.53 -11.40 16 3 C 0.06 0.60 5.46 86.32 0.47 1.07 16 4 C -0.11 -1.02 5.57 30.65 0.17 -0.85 16 5 C 0.15 2.25 2.28 45.07 0.10 2.36 16 6 N -0.65 -9.18 5.09 -329.17 -1.67 -10.85 16 7 C 0.58 13.72 7.82 179.05 1.40 15.12 16 8 S -0.73 -26.50 23.61 -56.49 -1.33 -27.83 16 9 N -0.59 -12.53 5.32 -189.86 -1.01 -13.54 16 10 C 0.04 1.10 5.96 38.17 0.23 1.33 16 11 C -0.02 -0.68 7.86 22.38 0.18 -0.50 16 12 C -0.24 -11.31 9.12 22.37 0.20 -11.11 16 13 C 0.13 6.34 6.65 22.59 0.15 6.49 16 14 O -0.22 -13.62 9.75 -22.88 -0.22 -13.84 16 15 C -0.41 -24.47 9.43 67.91 0.64 -23.83 16 16 H 0.10 5.45 5.31 -2.91 -0.02 5.44 16 17 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 18 N -0.92 -56.76 13.67 21.61 0.30 -56.46 16 19 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 C -0.20 -8.06 9.98 22.37 0.22 -7.83 16 24 C -0.05 -1.63 9.96 22.38 0.22 -1.41 16 25 C -0.12 -1.96 5.63 30.65 0.17 -1.79 16 26 C 0.06 0.98 5.46 86.33 0.47 1.45 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 29 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.70 8.12 -2.38 -0.02 0.68 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 1.93 6.81 -2.39 -0.02 1.92 16 35 H 0.42 2.44 8.62 -92.71 -0.80 1.64 16 36 H 0.43 4.79 8.84 -92.71 -0.82 3.97 16 37 H 0.14 5.38 6.01 -9.57 -0.06 5.33 16 38 H 0.11 5.59 5.72 -2.91 -0.02 5.57 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 40 H 0.13 4.98 8.06 -2.92 -0.02 4.96 16 41 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.37 7.52 -2.39 -0.02 1.36 16 44 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 Total: -1.00 -81.51 374.05 -0.76 -82.27 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.63 Total: 24.11 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 6.32 Total: -18.80 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -6.92 Total: -92.26 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.22 Total: -13.84 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -26.50 SS G_CDS: -1.33 Total: -27.83 kcal Total: -81.51 -0.76 -82.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063144546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.990 kcal (2) G-P(sol) polarization free energy of solvation -81.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds