Wall clock time and date at job start Tue Mar 31 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46843 * 111.00412 * 2 1 4 4 C 1.53041 * 109.52741 * 185.84020 * 3 2 1 5 5 C 1.53120 * 109.27700 * 300.81930 * 4 3 2 6 6 N 1.46499 * 109.52181 * 177.55920 * 5 4 3 7 7 C 1.34774 * 119.99890 * 155.00571 * 6 5 4 8 8 S 1.71202 * 119.99846 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.39895 * 120.00216 * 176.39121 * 9 7 6 11 11 C 1.38973 * 120.03769 * 224.17576 * 10 9 7 12 12 C 1.38156 * 120.06378 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.14233 * 359.73098 * 12 11 10 14 14 C 1.38913 * 120.07024 * 0.54607 * 13 12 11 15 15 O 1.35749 * 120.03475 * 179.72006 * 14 13 12 16 16 C 1.34838 * 116.99910 * 353.15687 * 15 14 13 17 17 H 1.08003 * 119.99824 * 4.69285 * 16 15 14 18 18 C 1.38644 * 119.99864 * 184.69845 * 16 15 14 19 19 N 1.31559 * 120.00536 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99830 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47366 * 60.00188 * 20 18 16 22 22 H 1.48503 * 109.47306 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47268 * 300.00217 * 20 18 16 24 24 C 1.38723 * 120.03499 * 44.20016 * 10 9 7 25 25 C 1.53126 * 109.15975 * 57.65323 * 5 4 3 26 26 C 1.46851 * 111.00113 * 124.21211 * 2 1 3 27 27 H 1.09003 * 109.47082 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46948 * 299.99876 * 1 2 3 30 30 H 1.09003 * 109.46366 * 65.82267 * 3 2 1 31 31 H 1.09002 * 109.45643 * 305.85176 * 3 2 1 32 32 H 1.08999 * 109.50461 * 180.88034 * 4 3 2 33 33 H 1.08997 * 109.53428 * 60.78212 * 4 3 2 34 34 H 1.09002 * 109.52245 * 297.68871 * 5 4 3 35 35 H 0.96998 * 119.99885 * 334.99835 * 6 5 4 36 36 H 0.97001 * 120.00297 * 356.38028 * 9 7 6 37 37 H 1.07999 * 119.96399 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.92480 * 180.02562 * 12 11 10 39 39 H 1.07992 * 119.96550 * 180.27353 * 13 12 11 40 40 H 0.96995 * 120.00240 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.07251 * 359.97438 * 24 10 9 42 42 H 1.08996 * 109.50326 * 62.28704 * 25 5 4 43 43 H 1.09000 * 109.50312 * 182.40371 * 25 5 4 44 44 H 1.09006 * 109.46060 * 294.17351 * 26 2 1 45 45 H 1.09002 * 109.46392 * 54.14259 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 7 5.5716 0.4488 0.8479 7 6 6.3631 0.2632 1.9229 8 16 5.6706 0.1312 3.4831 9 7 7.6996 0.1827 1.7698 10 6 8.5265 0.0659 2.8922 11 6 9.6869 0.8252 2.9834 12 6 10.5042 0.7099 4.0913 13 6 10.1680 -0.1558 5.1143 14 6 9.0124 -0.9217 5.0266 15 8 8.6859 -1.7762 6.0295 16 6 9.5929 -1.9401 7.0137 17 1 10.4955 -1.3471 7.0205 18 6 9.3667 -2.8699 8.0170 19 7 8.2670 -3.5920 8.0091 20 14 10.6235 -3.0975 9.3801 21 1 10.7986 -1.8167 10.1109 22 1 10.1494 -4.1440 10.3210 23 1 11.9222 -3.5132 8.7917 24 6 8.1892 -0.8082 3.9152 25 6 3.5181 -0.8716 1.0209 26 6 1.9952 -0.7708 1.1337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7325 1.8608 0.9376 31 1 1.5634 1.9256 -0.8330 32 1 3.9099 2.3511 -0.1310 33 1 3.7819 0.8571 -1.0907 34 1 3.8896 1.0360 1.9559 35 1 5.9639 0.5238 -0.0360 36 1 8.0883 0.2055 0.8814 37 1 9.9505 1.5053 2.1869 38 1 11.4052 1.3013 4.1600 39 1 10.8066 -0.2404 5.9811 40 1 8.1087 -4.2422 8.7112 41 1 7.2879 -1.3994 3.8468 42 1 3.7813 -1.3837 0.0954 43 1 3.9098 -1.4304 1.8708 44 1 1.7324 -0.2709 2.0660 45 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063149477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:00 Heat of formation + Delta-G solvation = 34.188966 kcal Electronic energy + Delta-G solvation = -25946.633821 eV Core-core repulsion = 22284.415503 eV Total energy + Delta-G solvation = -3662.218318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.07011 -39.30829 -38.12137 -36.59960 -34.83673 -32.25181 -32.03342 -31.18157 -29.46205 -28.48605 -26.53309 -25.22865 -24.30402 -23.44337 -22.80209 -21.65390 -21.43724 -20.24609 -18.58809 -18.25703 -17.25031 -16.67141 -15.89023 -15.43479 -15.30965 -15.17853 -15.01338 -14.92703 -14.65264 -14.26948 -14.07798 -13.57334 -13.54043 -13.34660 -12.84005 -12.74297 -12.70650 -12.40926 -12.01705 -11.65001 -11.59637 -11.48219 -11.44082 -11.11305 -11.03932 -10.85916 -10.75447 -10.73017 -10.66670 -10.43463 -9.56724 -9.29100 -8.75797 -8.66765 -8.07504 -7.53103 -7.17129 -6.51576 -6.34613 -3.92502 1.32651 2.06695 2.33787 2.41234 2.70755 3.19130 3.20339 3.23103 3.51993 3.60785 4.04928 4.33889 4.53919 4.61514 4.68383 4.86530 4.98426 5.14832 5.16435 5.18789 5.20255 5.27839 5.34186 5.41018 5.52698 5.56179 5.61245 5.64548 5.71198 5.79552 5.84536 5.99030 6.11466 6.18886 6.29337 6.43517 6.48973 6.70432 6.74794 6.89827 7.04899 7.07012 7.14012 7.38106 7.45478 7.55940 7.87180 8.09483 9.09803 9.82782 10.83051 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002609 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.382359 B =10729.850012 C =12120.770652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.061 3.939 4 C -0.124 4.124 5 C 0.146 3.854 6 N -0.686 5.686 7 C 0.551 3.449 8 S -0.600 6.600 9 N -0.623 5.623 10 C 0.147 3.853 11 C -0.216 4.216 12 C -0.071 4.071 13 C -0.231 4.231 14 C 0.158 3.842 15 O -0.170 6.170 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.859 5.859 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.271 1.271 24 C -0.130 4.130 25 C -0.127 4.127 26 C 0.059 3.941 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.393 0.607 36 H 0.400 0.600 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.145 0.855 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 9.001 -19.804 23.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.068 4.068 4 C -0.162 4.162 5 C 0.041 3.959 6 N -0.316 5.316 7 C 0.194 3.806 8 S -0.472 6.472 9 N -0.246 5.246 10 C 0.054 3.946 11 C -0.237 4.237 12 C -0.090 4.090 13 C -0.251 4.251 14 C 0.103 3.897 15 O -0.073 6.073 16 C -0.466 4.466 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.069 4.069 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.229 0.771 36 H 0.237 0.763 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.162 0.838 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.330 8.367 -18.913 22.688 hybrid contribution 1.148 0.522 -0.279 1.291 sum -8.182 8.890 -19.192 22.678 Atomic orbital electron populations 1.22343 0.87095 1.02272 1.00651 1.61989 1.07774 1.13432 1.43934 1.21987 0.94029 0.89648 1.01141 1.21879 0.95456 1.00416 0.98463 1.21464 0.75679 0.97614 1.01148 1.45025 1.07799 1.71655 1.07075 1.22537 0.83879 0.80322 0.93878 1.93736 1.75969 1.71238 1.06208 1.42165 1.02990 1.69713 1.09754 1.16842 0.91347 0.98513 0.87853 1.20226 0.97924 1.04551 1.01031 1.20422 0.98093 0.97594 0.92918 1.21223 1.00374 1.02109 1.01352 1.19040 0.91732 0.90302 0.88613 1.84009 1.41625 1.53609 1.28017 1.21282 1.01088 1.22049 1.02221 0.89154 1.25275 0.97613 0.95311 0.98337 1.70049 1.24221 1.21915 1.33177 0.85809 0.79534 0.78493 0.79726 1.19526 1.20350 1.19575 1.20405 1.01129 1.01162 0.92585 1.21973 0.94427 0.96574 1.03619 1.22052 0.94811 0.98566 0.91469 0.91438 0.91229 0.95464 0.94177 0.90244 0.90753 0.90646 0.86814 0.77090 0.76282 0.87726 0.87060 0.85452 0.92035 0.83754 0.91363 0.89185 0.93927 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.59 60.06 0.58 0.74 16 2 N -0.55 -4.56 4.91 -242.96 -1.19 -5.76 16 3 C 0.06 0.45 5.46 -3.83 -0.02 0.42 16 4 C -0.12 -0.88 5.57 -26.65 -0.15 -1.03 16 5 C 0.15 1.45 2.28 -67.80 -0.15 1.29 16 6 N -0.69 -6.81 5.09 -55.40 -0.28 -7.10 16 7 C 0.55 7.99 7.81 -86.93 -0.68 7.31 16 8 S -0.60 -12.18 23.61 -107.50 -2.54 -14.72 16 9 N -0.62 -8.54 5.32 -11.42 -0.06 -8.60 16 10 C 0.15 2.66 5.96 -83.73 -0.50 2.17 16 11 C -0.22 -3.65 9.97 -39.34 -0.39 -4.04 16 12 C -0.07 -1.29 10.03 -39.64 -0.40 -1.69 16 13 C -0.23 -5.07 9.16 -39.36 -0.36 -5.43 16 14 C 0.16 3.97 6.64 -39.13 -0.26 3.71 16 15 O -0.17 -5.03 9.76 0.03 0.00 -5.03 16 16 C -0.39 -11.15 9.49 30.88 0.29 -10.86 16 17 H 0.09 2.36 5.21 -52.48 -0.27 2.09 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 20 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C -0.13 -2.94 7.81 -39.20 -0.31 -3.24 16 25 C -0.13 -1.33 5.63 -26.65 -0.15 -1.48 16 26 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 1.45 6.81 -51.93 -0.35 1.10 16 35 H 0.39 2.57 8.62 -40.82 -0.35 2.22 16 36 H 0.40 3.77 8.84 -40.82 -0.36 3.41 16 37 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.13 2.78 5.65 -52.49 -0.30 2.48 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 41 H 0.14 3.50 6.00 -41.93 -0.25 3.25 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.20 7.52 -51.93 -0.39 0.81 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -34.94 373.96 -11.80 -46.74 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.48 Total: 8.66 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.62 Total: -10.57 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.78 Total: -46.64 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: 0.00 Total: -5.03 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -12.18 SS G_CDS: -2.54 Total: -14.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.94 -11.80 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063149477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.930 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds