Wall clock time and date at job start Tue Mar 31 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46843 * 111.00412 * 2 1 4 4 C 1.53041 * 109.52741 * 185.84020 * 3 2 1 5 5 C 1.53120 * 109.27700 * 300.81930 * 4 3 2 6 6 N 1.46499 * 109.52181 * 177.55920 * 5 4 3 7 7 C 1.34774 * 119.99890 * 155.00571 * 6 5 4 8 8 S 1.71202 * 119.99846 * 359.97438 * 7 6 5 9 9 N 1.34770 * 119.99994 * 180.02562 * 7 6 5 10 10 C 1.39895 * 120.00216 * 176.39121 * 9 7 6 11 11 C 1.38973 * 120.03769 * 224.17576 * 10 9 7 12 12 C 1.38156 * 120.06378 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.14233 * 359.73098 * 12 11 10 14 14 C 1.38913 * 120.07024 * 0.54607 * 13 12 11 15 15 O 1.35749 * 120.03475 * 179.72006 * 14 13 12 16 16 C 1.34838 * 116.99910 * 353.15687 * 15 14 13 17 17 H 1.08003 * 119.99824 * 4.69285 * 16 15 14 18 18 C 1.38644 * 119.99864 * 184.69845 * 16 15 14 19 19 N 1.31559 * 120.00536 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99830 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47366 * 60.00188 * 20 18 16 22 22 H 1.48503 * 109.47306 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47268 * 300.00217 * 20 18 16 24 24 C 1.38723 * 120.03499 * 44.20016 * 10 9 7 25 25 C 1.53126 * 109.15975 * 57.65323 * 5 4 3 26 26 C 1.46851 * 111.00113 * 124.21211 * 2 1 3 27 27 H 1.09003 * 109.47082 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46948 * 299.99876 * 1 2 3 30 30 H 1.09003 * 109.46366 * 65.82267 * 3 2 1 31 31 H 1.09002 * 109.45643 * 305.85176 * 3 2 1 32 32 H 1.08999 * 109.50461 * 180.88034 * 4 3 2 33 33 H 1.08997 * 109.53428 * 60.78212 * 4 3 2 34 34 H 1.09002 * 109.52245 * 297.68871 * 5 4 3 35 35 H 0.96998 * 119.99885 * 334.99835 * 6 5 4 36 36 H 0.97001 * 120.00297 * 356.38028 * 9 7 6 37 37 H 1.07999 * 119.96399 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.92480 * 180.02562 * 12 11 10 39 39 H 1.07992 * 119.96550 * 180.27353 * 13 12 11 40 40 H 0.96995 * 120.00240 * 180.02562 * 19 18 16 41 41 H 1.08001 * 120.07251 * 359.97438 * 24 10 9 42 42 H 1.08996 * 109.50326 * 62.28704 * 25 5 4 43 43 H 1.09000 * 109.50312 * 182.40371 * 25 5 4 44 44 H 1.09006 * 109.46060 * 294.17351 * 26 2 1 45 45 H 1.09002 * 109.46392 * 54.14259 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5182 1.3341 -0.1468 5 6 4.1188 0.5369 1.0144 6 7 5.5716 0.4488 0.8479 7 6 6.3631 0.2632 1.9229 8 16 5.6706 0.1312 3.4831 9 7 7.6996 0.1827 1.7698 10 6 8.5265 0.0659 2.8922 11 6 9.6869 0.8252 2.9834 12 6 10.5042 0.7099 4.0913 13 6 10.1680 -0.1558 5.1143 14 6 9.0124 -0.9217 5.0266 15 8 8.6859 -1.7762 6.0295 16 6 9.5929 -1.9401 7.0137 17 1 10.4955 -1.3471 7.0205 18 6 9.3667 -2.8699 8.0170 19 7 8.2670 -3.5920 8.0091 20 14 10.6235 -3.0975 9.3801 21 1 10.7986 -1.8167 10.1109 22 1 10.1494 -4.1440 10.3210 23 1 11.9222 -3.5132 8.7917 24 6 8.1892 -0.8082 3.9152 25 6 3.5181 -0.8716 1.0209 26 6 1.9952 -0.7708 1.1337 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7325 1.8608 0.9376 31 1 1.5634 1.9256 -0.8330 32 1 3.9099 2.3511 -0.1310 33 1 3.7819 0.8571 -1.0907 34 1 3.8896 1.0360 1.9559 35 1 5.9639 0.5238 -0.0360 36 1 8.0883 0.2055 0.8814 37 1 9.9505 1.5053 2.1869 38 1 11.4052 1.3013 4.1600 39 1 10.8066 -0.2404 5.9811 40 1 8.1087 -4.2422 8.7112 41 1 7.2879 -1.3994 3.8468 42 1 3.7813 -1.3837 0.0954 43 1 3.9098 -1.4304 1.8708 44 1 1.7324 -0.2709 2.0660 45 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063149477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:59 Heat of formation + Delta-G solvation = 8.631080 kcal Electronic energy + Delta-G solvation = -25947.742094 eV Core-core repulsion = 22284.415503 eV Total energy + Delta-G solvation = -3663.326591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31217 -40.57466 -39.53943 -37.98537 -36.11984 -34.23213 -33.04184 -31.92148 -31.12366 -29.98613 -27.43038 -27.19359 -25.49557 -24.23780 -23.75854 -23.13841 -22.99297 -21.13231 -20.23277 -19.51368 -18.96814 -18.02653 -16.99022 -16.74964 -16.62361 -16.43788 -16.14828 -16.02343 -15.89828 -15.65141 -15.43938 -15.25211 -14.74046 -14.39279 -14.25607 -14.04688 -13.51861 -13.44613 -13.37222 -13.07351 -12.85444 -12.68404 -12.47186 -12.33653 -12.30602 -12.22669 -12.18010 -12.15066 -11.82210 -11.57641 -11.24584 -10.82655 -10.62826 -9.62444 -9.35483 -9.10834 -8.85418 -8.40764 -8.13782 -6.08707 -0.04772 0.68993 0.78893 0.87911 1.35690 1.40375 1.48749 1.53529 2.21143 2.47201 2.86441 2.94688 3.21660 3.57263 3.62285 3.74725 4.01231 4.11287 4.19500 4.29979 4.36742 4.38584 4.42673 4.48241 4.54434 4.55288 4.65829 4.72687 4.79179 4.86452 4.90665 4.94550 4.97257 5.03891 5.05541 5.13662 5.15816 5.31754 5.41405 5.56824 5.67670 5.77933 5.88714 6.02676 6.08719 6.09058 6.23984 6.40781 7.02740 7.88689 8.83011 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002609 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.382359 B =10729.850012 C =12120.770652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.057 3.943 4 C -0.111 4.111 5 C 0.145 3.855 6 N -0.648 5.648 7 C 0.583 3.417 8 S -0.721 6.721 9 N -0.603 5.603 10 C 0.158 3.842 11 C -0.181 4.181 12 C -0.066 4.066 13 C -0.237 4.237 14 C 0.115 3.885 15 O -0.233 6.233 16 C -0.410 4.410 17 H 0.105 0.895 18 C -0.028 4.028 19 N -0.925 5.925 20 Si 1.021 2.979 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.253 1.253 24 C -0.150 4.150 25 C -0.120 4.120 26 C 0.063 3.937 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.421 0.579 36 H 0.431 0.569 37 H 0.162 0.838 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.270 0.730 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.024 0.976 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 11.971 -24.111 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.149 4.149 5 C 0.040 3.960 6 N -0.277 5.277 7 C 0.220 3.780 8 S -0.593 6.593 9 N -0.230 5.230 10 C 0.064 3.936 11 C -0.201 4.201 12 C -0.084 4.084 13 C -0.257 4.257 14 C 0.063 3.937 15 O -0.140 6.140 16 C -0.487 4.487 17 H 0.122 0.878 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.840 3.160 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.177 1.177 24 C -0.172 4.172 25 C -0.159 4.159 26 C -0.065 4.065 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.261 0.739 36 H 0.273 0.727 37 H 0.179 0.821 38 H 0.176 0.824 39 H 0.140 0.860 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.204 11.398 -23.371 26.982 hybrid contribution 0.421 -0.166 0.609 0.759 sum -6.783 11.232 -22.762 26.273 Atomic orbital electron populations 1.22412 0.86108 1.02705 1.01281 1.62040 1.08730 1.13916 1.42549 1.22106 0.94286 0.89170 1.01600 1.21844 0.94986 1.00792 0.97313 1.21525 0.75253 0.97574 1.01613 1.44927 1.07687 1.68097 1.06995 1.21738 0.84156 0.79410 0.92662 1.94141 1.77716 1.76091 1.11388 1.41807 1.02087 1.69032 1.10069 1.16894 0.92095 0.96940 0.87644 1.20849 0.95503 1.02458 1.01305 1.20942 0.99603 0.96281 0.91602 1.21390 0.99138 1.02526 1.02641 1.19597 0.93960 0.91176 0.88936 1.83980 1.43415 1.56604 1.30007 1.21843 1.01639 1.22579 1.02591 0.87758 1.26663 1.00016 0.94681 1.01154 1.70231 1.27291 1.23871 1.34928 0.84627 0.76749 0.78848 0.75811 1.18161 1.19926 1.17719 1.20386 1.00153 1.02809 0.93895 1.21850 0.95124 0.96476 1.02489 1.21943 0.94212 0.98914 0.91455 0.89682 0.91024 0.95873 0.95288 0.87867 0.89053 0.88688 0.89777 0.73858 0.72701 0.82081 0.82406 0.86024 0.92068 0.86733 0.90067 0.92904 0.95794 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.59 127.69 1.22 1.50 16 2 N -0.55 -8.27 4.91 -922.59 -4.53 -12.80 16 3 C 0.06 0.70 5.46 86.33 0.47 1.17 16 4 C -0.11 -1.20 5.57 30.65 0.17 -1.03 16 5 C 0.14 2.72 2.28 45.07 0.10 2.82 16 6 N -0.65 -11.12 5.09 -329.18 -1.67 -12.80 16 7 C 0.58 16.19 7.81 179.06 1.40 17.59 16 8 S -0.72 -31.25 23.61 -56.49 -1.33 -32.58 16 9 N -0.60 -14.57 5.32 -190.04 -1.01 -15.58 16 10 C 0.16 5.39 5.96 38.15 0.23 5.62 16 11 C -0.18 -5.16 9.97 22.43 0.22 -4.94 16 12 C -0.07 -2.12 10.03 22.23 0.22 -1.90 16 13 C -0.24 -10.43 9.16 22.42 0.21 -10.23 16 14 C 0.11 6.08 6.64 22.56 0.15 6.23 16 15 O -0.23 -15.07 9.76 -22.81 -0.22 -15.29 16 16 C -0.41 -25.03 9.49 67.92 0.64 -24.39 16 17 H 0.11 5.72 5.21 -2.91 -0.02 5.71 16 18 C -0.03 -1.70 5.49 84.83 0.47 -1.23 16 19 N -0.92 -60.29 13.67 21.61 0.30 -59.99 16 20 Si 1.02 44.73 29.55 68.60 2.03 46.75 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 24 C -0.15 -7.05 7.81 22.51 0.18 -6.87 16 25 C -0.12 -2.53 5.63 30.65 0.17 -2.36 16 26 C 0.06 1.24 5.46 86.32 0.47 1.71 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 29 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.08 2.22 6.81 -2.39 -0.02 2.20 16 35 H 0.42 3.35 8.62 -92.71 -0.80 2.55 16 36 H 0.43 5.65 8.84 -92.71 -0.82 4.83 16 37 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.12 5.39 5.65 -2.91 -0.02 5.37 16 40 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.11 6.09 6.00 -9.62 -0.06 6.03 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.54 7.52 -2.39 -0.02 1.52 16 44 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 45 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 Total: -1.00 -89.81 373.96 -0.75 -90.57 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.63 Total: 28.04 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 6.33 Total: -16.31 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -6.92 Total: -101.17 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.22 Total: -15.29 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -31.25 SS G_CDS: -1.33 Total: -32.58 kcal Total: -89.81 -0.75 -90.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063149477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.198 kcal (2) G-P(sol) polarization free energy of solvation -89.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds