Wall clock time and date at job start Tue Mar 31 2020 19:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99907 * 2 1 4 4 C 1.53000 * 109.47159 * 180.02562 * 3 2 1 5 5 O 1.45202 * 109.47068 * 64.99766 * 4 3 2 6 6 C 1.34228 * 116.99670 * 179.97438 * 5 4 3 7 7 O 1.20829 * 120.00368 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47078 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00097 * 354.45796 * 10 9 8 12 12 N 1.34775 * 119.99667 * 174.45902 * 10 9 8 13 13 C 1.46506 * 120.00030 * 184.45100 * 12 10 9 14 14 C 1.50707 * 109.47103 * 270.00389 * 13 12 10 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99566 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47569 * 59.99791 * 18 16 14 20 20 H 1.48501 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46961 * 299.99706 * 18 16 14 22 22 C 1.39923 * 120.00153 * 4.45919 * 12 10 9 23 23 C 1.38872 * 120.07336 * 66.79372 * 22 12 10 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 12 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 1.08992 * 109.47049 * 60.00407 * 1 2 3 29 29 H 1.09007 * 109.46808 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46814 * 299.99545 * 1 2 3 31 31 H 1.08996 * 109.47496 * 60.00062 * 3 2 1 32 32 H 1.09003 * 109.47218 * 299.99819 * 3 2 1 33 33 H 1.09000 * 109.46960 * 304.99709 * 4 3 2 34 34 H 1.08999 * 109.47097 * 184.99719 * 4 3 2 35 35 H 1.09004 * 109.46647 * 60.00151 * 8 6 5 36 36 H 1.09001 * 109.46925 * 300.01005 * 8 6 5 37 37 H 1.08998 * 109.47255 * 60.00377 * 9 8 6 38 38 H 1.08998 * 109.47196 * 299.99859 * 9 8 6 39 39 H 1.09001 * 109.46670 * 30.00181 * 13 12 10 40 40 H 1.08996 * 109.47328 * 150.00546 * 13 12 10 41 41 H 0.97008 * 120.00038 * 179.97438 * 17 16 14 42 42 H 1.07996 * 120.03472 * 359.70196 * 23 22 12 43 43 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 44 44 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9718 0.5699 -1.2416 6 6 5.2924 0.3913 -1.4018 7 8 6.0585 0.7368 -0.5336 8 6 5.8197 -0.2412 -2.6640 9 6 7.3455 -0.3279 -2.5920 10 6 7.8727 -0.9599 -3.8546 11 8 7.1011 -1.3979 -4.6814 12 7 9.2017 -1.0382 -4.0647 13 6 9.7130 -1.5631 -5.3333 14 6 9.8973 -3.0547 -5.2221 15 1 9.6572 -3.5611 -4.2989 16 6 10.3716 -3.7729 -6.2992 17 7 10.6626 -3.1564 -7.4238 18 14 10.5993 -5.6218 -6.1615 19 1 9.2947 -6.2597 -5.8515 20 1 11.1178 -6.1538 -7.4474 21 1 11.5674 -5.9219 -5.0761 22 6 10.0930 -0.6185 -3.0712 23 6 10.1784 -1.3156 -1.8731 24 6 11.0596 -0.8989 -0.8947 25 6 11.8569 0.2108 -1.1073 26 6 11.7741 0.9073 -2.2990 27 6 10.8948 0.4958 -3.2814 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 5.5299 0.3648 -3.5224 36 1 5.4036 -1.2431 -2.7695 37 1 7.6349 -0.9341 -1.7337 38 1 7.7618 0.6739 -2.4864 39 1 9.0026 -1.3432 -6.1302 40 1 10.6706 -1.0947 -5.5607 41 1 10.9966 -3.6617 -8.1815 42 1 9.5531 -2.1799 -1.7050 43 1 11.1262 -1.4403 0.0373 44 1 12.5456 0.5344 -0.3407 45 1 12.3978 1.7738 -2.4618 46 1 10.8303 1.0405 -4.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066655976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:01 Heat of formation + Delta-G solvation = -139.972111 kcal Electronic energy + Delta-G solvation = -28401.086937 eV Core-core repulsion = 24256.270806 eV Total energy + Delta-G solvation = -4144.816131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62377 -39.84756 -38.31371 -38.07806 -36.52832 -34.90981 -33.03979 -32.51220 -30.99426 -30.63026 -29.35560 -27.66771 -26.73687 -25.60478 -23.29557 -22.71781 -22.34257 -21.95754 -20.68496 -18.95630 -18.03245 -17.32588 -17.01524 -16.64596 -16.33029 -16.29154 -15.94106 -15.80115 -15.43955 -15.12876 -14.86815 -14.48972 -14.21833 -14.12214 -13.52591 -13.23136 -13.11851 -12.95539 -12.69146 -12.61509 -12.29393 -12.15501 -12.08291 -11.82966 -11.63198 -11.45259 -11.22189 -11.13637 -10.92108 -10.83122 -10.80860 -10.62111 -10.49780 -10.17195 -10.08507 -9.74992 -9.33663 -8.64229 -8.56693 -8.43455 -7.66394 -6.05640 -4.09894 1.60767 1.69463 2.18520 2.49907 3.24130 3.33311 3.33767 3.36725 3.40670 3.78648 4.08124 4.44439 4.47569 4.55975 4.73115 4.85307 4.91871 4.99811 5.03145 5.05716 5.13139 5.16910 5.21582 5.24699 5.29781 5.33615 5.38923 5.40585 5.65976 5.72623 5.85738 5.90238 6.02535 6.09407 6.29936 6.32046 6.64164 6.72052 6.77382 6.82570 6.98084 7.22050 7.34221 7.47002 7.70408 7.89469 8.18374 8.31477 8.81850 8.96709 9.54432 11.02739 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.002826 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.487586 B = 9907.357911 C =11674.535867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.062 3.938 4 C 0.067 3.933 5 O -0.349 6.349 6 C 0.465 3.535 7 O -0.511 6.511 8 C -0.097 4.097 9 C -0.130 4.130 10 C 0.514 3.486 11 O -0.527 6.527 12 N -0.560 5.560 13 C 0.248 3.752 14 C -0.525 4.525 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.163 3.837 23 C -0.123 4.123 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.110 4.110 27 C -0.125 4.125 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.458 11.905 16.328 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.007 4.007 5 O -0.266 6.266 6 C 0.309 3.691 7 O -0.399 6.399 8 C -0.135 4.135 9 C -0.170 4.170 10 C 0.302 3.698 11 O -0.403 6.403 12 N -0.288 5.288 13 C 0.131 3.869 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.202 1.202 22 C 0.071 3.929 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.152 4.152 26 C -0.128 4.128 27 C -0.145 4.145 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.513 11.566 15.908 22.790 hybrid contribution 0.137 -0.796 0.168 0.825 sum -11.376 10.770 16.076 22.446 Atomic orbital electron populations 1.22768 0.80728 1.03109 0.99947 1.87981 1.19917 1.27035 1.95411 1.22608 0.91538 0.85870 1.01484 1.23058 0.93179 0.98872 0.85590 1.86575 1.25897 1.73582 1.40545 1.23915 0.80209 0.75719 0.89272 1.90668 1.57865 1.47619 1.43716 1.21113 0.95483 1.03944 0.92985 1.21516 0.93807 1.03618 0.98060 1.20232 0.82280 0.79569 0.87742 1.90701 1.55587 1.47395 1.46627 1.45958 1.04030 1.61190 1.17604 1.19438 0.94964 0.94073 0.78441 1.21317 1.43853 0.92228 0.98934 0.92429 1.24904 0.95259 0.98808 0.95007 1.69914 1.44556 1.36137 1.02792 0.86544 0.78558 0.85024 0.77249 1.20093 1.21148 1.20223 1.17718 0.93110 0.92965 0.89097 1.21341 0.99785 0.99168 0.93929 1.20963 0.96106 0.96905 0.98732 1.21051 1.00075 0.96568 0.97553 1.20953 0.98387 0.99908 0.93589 1.21287 0.97387 0.96041 0.99771 0.93817 0.89388 0.94115 0.91017 0.91906 0.90263 0.89562 0.86922 0.86535 0.88231 0.88602 0.93472 0.94648 0.92617 0.85982 0.86156 0.86426 0.86136 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.89 10.67 -38.80 -0.41 -4.30 16 3 C 0.06 0.48 6.33 37.16 0.24 0.71 16 4 C 0.07 0.64 5.84 37.16 0.22 0.86 16 5 O -0.35 -4.37 10.19 -42.02 -0.43 -4.80 16 6 C 0.47 6.32 7.96 36.01 0.29 6.60 16 7 O -0.51 -7.86 15.73 -18.75 -0.29 -8.16 16 8 C -0.10 -1.34 5.12 -27.88 -0.14 -1.49 16 9 C -0.13 -2.03 3.66 -27.88 -0.10 -2.13 16 10 C 0.51 10.49 7.53 -10.98 -0.08 10.41 16 11 O -0.53 -12.57 15.61 5.55 0.09 -12.48 16 12 N -0.56 -12.06 2.51 -114.73 -0.29 -12.34 16 13 C 0.25 6.49 5.07 -5.19 -0.03 6.46 16 14 C -0.52 -14.93 9.39 -34.44 -0.32 -15.26 16 15 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.90 -26.57 13.28 55.43 0.74 -25.83 16 18 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.16 3.01 4.42 -83.69 -0.37 2.64 16 23 C -0.12 -2.05 8.46 -39.39 -0.33 -2.38 16 24 C -0.11 -1.52 10.04 -39.61 -0.40 -1.91 16 25 C -0.13 -1.74 10.04 -39.55 -0.40 -2.14 16 26 C -0.11 -1.50 10.04 -39.61 -0.40 -1.90 16 27 C -0.13 -2.05 9.64 -39.39 -0.38 -2.43 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.09 0.70 8.13 -51.93 -0.42 0.27 16 35 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.12 1.62 8.04 -51.93 -0.42 1.20 16 37 H 0.10 1.51 6.95 -51.93 -0.36 1.15 16 38 H 0.10 1.42 7.97 -51.93 -0.41 1.01 16 39 H 0.05 1.36 7.49 -51.93 -0.39 0.97 16 40 H 0.04 0.95 7.83 -51.93 -0.41 0.54 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.12 2.03 7.90 -52.49 -0.41 1.62 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 45 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 46 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -34.75 398.52 -7.84 -42.59 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.02 Total: 1.22 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.20 Total: 1.06 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.45 Total: -38.18 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.05 Total: -29.73 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.75 -7.84 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066655976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.381 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds