Wall clock time and date at job start Tue Mar 31 2020 19:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99907 * 2 1 4 4 C 1.53000 * 109.47159 * 180.02562 * 3 2 1 5 5 O 1.45202 * 109.47068 * 64.99766 * 4 3 2 6 6 C 1.34228 * 116.99670 * 179.97438 * 5 4 3 7 7 O 1.20829 * 120.00368 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99925 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47078 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46774 * 180.02562 * 9 8 6 11 11 O 1.21283 * 120.00097 * 354.45796 * 10 9 8 12 12 N 1.34775 * 119.99667 * 174.45902 * 10 9 8 13 13 C 1.46506 * 120.00030 * 184.45100 * 12 10 9 14 14 C 1.50707 * 109.47103 * 270.00389 * 13 12 10 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99566 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47569 * 59.99791 * 18 16 14 20 20 H 1.48501 * 109.47168 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46961 * 299.99706 * 18 16 14 22 22 C 1.39923 * 120.00153 * 4.45919 * 12 10 9 23 23 C 1.38872 * 120.07336 * 66.79372 * 22 12 10 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 12 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 H 1.08992 * 109.47049 * 60.00407 * 1 2 3 29 29 H 1.09007 * 109.46808 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46814 * 299.99545 * 1 2 3 31 31 H 1.08996 * 109.47496 * 60.00062 * 3 2 1 32 32 H 1.09003 * 109.47218 * 299.99819 * 3 2 1 33 33 H 1.09000 * 109.46960 * 304.99709 * 4 3 2 34 34 H 1.08999 * 109.47097 * 184.99719 * 4 3 2 35 35 H 1.09004 * 109.46647 * 60.00151 * 8 6 5 36 36 H 1.09001 * 109.46925 * 300.01005 * 8 6 5 37 37 H 1.08998 * 109.47255 * 60.00377 * 9 8 6 38 38 H 1.08998 * 109.47196 * 299.99859 * 9 8 6 39 39 H 1.09001 * 109.46670 * 30.00181 * 13 12 10 40 40 H 1.08996 * 109.47328 * 150.00546 * 13 12 10 41 41 H 0.97008 * 120.00038 * 179.97438 * 17 16 14 42 42 H 1.07996 * 120.03472 * 359.70196 * 23 22 12 43 43 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 44 44 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9718 0.5699 -1.2416 6 6 5.2924 0.3913 -1.4018 7 8 6.0585 0.7368 -0.5336 8 6 5.8197 -0.2412 -2.6640 9 6 7.3455 -0.3279 -2.5920 10 6 7.8727 -0.9599 -3.8546 11 8 7.1011 -1.3979 -4.6814 12 7 9.2017 -1.0382 -4.0647 13 6 9.7130 -1.5631 -5.3333 14 6 9.8973 -3.0547 -5.2221 15 1 9.6572 -3.5611 -4.2989 16 6 10.3716 -3.7729 -6.2992 17 7 10.6626 -3.1564 -7.4238 18 14 10.5993 -5.6218 -6.1615 19 1 9.2947 -6.2597 -5.8515 20 1 11.1178 -6.1538 -7.4474 21 1 11.5674 -5.9219 -5.0761 22 6 10.0930 -0.6185 -3.0712 23 6 10.1784 -1.3156 -1.8731 24 6 11.0596 -0.8989 -0.8947 25 6 11.8569 0.2108 -1.1073 26 6 11.7741 0.9073 -2.2990 27 6 10.8948 0.4958 -3.2814 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 5.5299 0.3648 -3.5224 36 1 5.4036 -1.2431 -2.7695 37 1 7.6349 -0.9341 -1.7337 38 1 7.7618 0.6739 -2.4864 39 1 9.0026 -1.3432 -6.1302 40 1 10.6706 -1.0947 -5.5607 41 1 10.9966 -3.6617 -8.1815 42 1 9.5531 -2.1799 -1.7050 43 1 11.1262 -1.4403 0.0373 44 1 12.5456 0.5344 -0.3407 45 1 12.3978 1.7738 -2.4618 46 1 10.8303 1.0405 -4.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066655976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:00 Heat of formation + Delta-G solvation = -160.595188 kcal Electronic energy + Delta-G solvation = -28401.981221 eV Core-core repulsion = 24256.270806 eV Total energy + Delta-G solvation = -4145.710415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77688 -41.24685 -39.51932 -38.93122 -37.52393 -36.57039 -34.84688 -34.09626 -31.86204 -31.67823 -30.85004 -29.36426 -27.48881 -26.92461 -24.84316 -23.92718 -23.45361 -23.25355 -21.80708 -20.40028 -19.19181 -18.71887 -18.23066 -18.09542 -17.62250 -17.32170 -17.07430 -16.93268 -16.59366 -16.51221 -16.13314 -15.73465 -15.64291 -15.30323 -14.75614 -14.47054 -14.32097 -14.26764 -14.09206 -13.71822 -13.58061 -13.43599 -13.31482 -13.13101 -13.01063 -12.65392 -12.58179 -12.43247 -12.34174 -12.30012 -12.13509 -12.09748 -11.74457 -11.69417 -11.58418 -10.98467 -10.67079 -10.66380 -10.11812 -9.80919 -9.22207 -8.24634 -6.38936 0.37862 0.52286 1.10281 1.35026 1.39187 1.46003 1.50186 1.64356 2.22330 2.40045 2.77993 2.89061 3.05333 3.38984 3.74211 3.83838 3.91146 3.94530 4.08738 4.09565 4.13735 4.31787 4.32802 4.43619 4.48548 4.51888 4.56239 4.61286 4.67236 4.67387 4.69568 4.77737 4.84423 4.88177 5.00988 5.10702 5.16888 5.32101 5.41596 5.55014 5.63982 5.66993 5.77270 6.00821 6.08683 6.17900 6.62961 6.66008 6.70670 7.20101 7.34682 8.82463 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.002826 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.487586 B = 9907.357911 C =11674.535867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.062 3.938 4 C 0.059 3.941 5 O -0.356 6.356 6 C 0.476 3.524 7 O -0.529 6.529 8 C -0.095 4.095 9 C -0.109 4.109 10 C 0.508 3.492 11 O -0.572 6.572 12 N -0.563 5.563 13 C 0.266 3.734 14 C -0.541 4.541 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.276 1.276 21 H -0.264 1.264 22 C 0.126 3.874 23 C -0.136 4.136 24 C -0.105 4.105 25 C -0.121 4.121 26 C -0.104 4.104 27 C -0.140 4.140 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.008 0.992 40 H 0.022 0.978 41 H 0.268 0.732 42 H 0.113 0.887 43 H 0.151 0.849 44 H 0.159 0.841 45 H 0.153 0.847 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 12.508 19.128 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.272 6.272 6 C 0.321 3.679 7 O -0.419 6.419 8 C -0.133 4.133 9 C -0.149 4.149 10 C 0.298 3.702 11 O -0.452 6.452 12 N -0.290 5.290 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.069 0.931 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.200 1.200 20 H -0.201 1.201 21 H -0.189 1.189 22 C 0.035 3.965 23 C -0.156 4.156 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.122 4.122 27 C -0.160 4.160 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.026 0.974 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.168 0.832 44 H 0.176 0.824 45 H 0.171 0.829 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.923 12.197 18.750 24.893 hybrid contribution -0.037 -0.891 -0.633 1.093 sum -10.960 11.306 18.117 24.004 Atomic orbital electron populations 1.22924 0.79167 1.03750 1.01166 1.87925 1.21792 1.28505 1.95704 1.22753 0.89984 0.85416 1.03295 1.23404 0.94739 0.99311 0.84018 1.86560 1.24910 1.73634 1.42132 1.23600 0.80573 0.75200 0.88560 1.90654 1.58388 1.48602 1.44229 1.21030 0.94219 1.04165 0.93841 1.21346 0.94832 1.03574 0.95159 1.21057 0.81625 0.78794 0.88703 1.90662 1.56563 1.49446 1.48506 1.45794 1.05141 1.61094 1.16945 1.18859 0.93145 0.93367 0.80031 1.21566 1.44090 0.93440 0.98876 0.93119 1.25813 0.94748 1.03791 0.94550 1.70028 1.45032 1.38049 1.03471 0.85490 0.78625 0.78948 0.77920 1.20025 1.20056 1.18873 1.17979 0.94374 0.94886 0.89271 1.21387 1.00904 0.99152 0.94166 1.21338 0.94827 0.97242 0.98940 1.21549 0.99350 0.95178 0.97818 1.21340 0.97360 1.00614 0.92924 1.21395 0.98093 0.95859 1.00618 0.93164 0.89182 0.92276 0.87933 0.91199 0.90842 0.87909 0.86257 0.86812 0.87537 0.87476 0.97365 0.96020 0.92286 0.86886 0.83150 0.82386 0.82916 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -8.03 10.67 -145.57 -1.55 -9.59 16 3 C 0.06 0.84 6.33 71.98 0.46 1.30 16 4 C 0.06 1.05 5.84 71.98 0.42 1.47 16 5 O -0.36 -8.67 10.19 -48.75 -0.50 -9.17 16 6 C 0.48 12.71 7.96 71.24 0.57 13.28 16 7 O -0.53 -15.79 15.73 21.95 0.35 -15.45 16 8 C -0.09 -2.65 5.12 29.85 0.15 -2.50 16 9 C -0.11 -3.48 3.66 29.85 0.11 -3.37 16 10 C 0.51 21.84 7.53 87.66 0.66 22.50 16 11 O -0.57 -29.00 15.61 -3.04 -0.05 -29.05 16 12 N -0.56 -25.53 2.51 -635.28 -1.59 -27.13 16 13 C 0.27 14.77 5.07 85.63 0.43 15.20 16 14 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 15 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 16 C 0.01 0.60 5.46 84.66 0.46 1.06 16 17 N -0.93 -56.58 13.28 21.45 0.28 -56.29 16 18 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 19 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.13 4.73 4.42 38.15 0.17 4.90 16 23 C -0.14 -4.49 8.46 22.39 0.19 -4.30 16 24 C -0.11 -2.63 10.04 22.25 0.22 -2.41 16 25 C -0.12 -2.65 10.04 22.29 0.22 -2.42 16 26 C -0.10 -2.56 10.04 22.25 0.22 -2.33 16 27 C -0.14 -4.57 9.64 22.39 0.22 -4.35 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.40 8.13 -2.39 -0.02 1.38 16 34 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 35 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 36 H 0.11 3.27 8.04 -2.39 -0.02 3.25 16 37 H 0.11 3.26 6.95 -2.39 -0.02 3.25 16 38 H 0.11 3.18 7.97 -2.39 -0.02 3.16 16 39 H 0.01 0.52 7.49 -2.39 -0.02 0.50 16 40 H 0.02 1.24 7.83 -2.39 -0.02 1.22 16 41 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 42 H 0.11 3.82 7.90 -2.91 -0.02 3.79 16 43 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 44 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 46 H 0.12 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -78.52 398.52 5.92 -72.60 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.96 Total: 18.51 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 6.00 Total: 7.76 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -1.31 Total: -83.42 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -1.75 Total: -63.26 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.52 5.92 -72.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066655976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.997 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds