Wall clock time and date at job start Tue Mar 31 2020 19:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00248 * 2 1 4 4 C 1.52997 * 109.47115 * 179.97438 * 3 2 1 5 5 O 1.42893 * 109.47176 * 65.00342 * 4 3 2 6 6 C 1.42898 * 114.00437 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47643 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47283 * 64.99486 * 7 6 5 9 9 C 1.34780 * 120.00068 * 179.72438 * 8 7 6 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46612 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47242 * 119.99850 * 22 20 18 25 25 H 1.48501 * 109.46802 * 239.99820 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.08997 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47589 * 300.00494 * 1 2 3 30 30 H 1.09008 * 109.46839 * 60.00529 * 1 2 3 31 31 H 1.09000 * 109.46557 * 59.99448 * 3 2 1 32 32 H 1.08998 * 109.47016 * 299.99758 * 3 2 1 33 33 H 1.09000 * 109.47231 * 305.00018 * 4 3 2 34 34 H 1.09001 * 109.46792 * 184.99750 * 4 3 2 35 35 H 1.08998 * 109.46893 * 59.99195 * 6 5 4 36 36 H 1.09004 * 109.46777 * 300.00154 * 6 5 4 37 37 H 1.08999 * 109.46934 * 304.99815 * 7 6 5 38 38 H 1.09000 * 109.47417 * 184.99849 * 7 6 5 39 39 H 0.97000 * 119.99919 * 0.02562 * 8 7 6 40 40 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 41 41 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 42 42 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 43 43 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 44 44 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 45 45 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 46 46 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4196 -1.3221 7 6 5.7266 -0.2351 -2.6613 8 7 5.3585 0.6673 -3.7550 9 6 5.5767 0.3007 -5.0335 10 8 6.0792 -0.7803 -5.2794 11 6 5.2097 1.2019 -6.1254 12 6 5.4278 0.8344 -7.4063 13 6 5.0596 1.7401 -8.5035 14 6 4.4770 2.9822 -8.2232 15 6 4.1396 3.8296 -9.2535 16 6 4.3649 3.4484 -10.5730 17 8 4.0252 4.2840 -11.5850 18 6 4.3735 3.9083 -12.8318 19 1 4.8258 2.9417 -12.9978 20 6 4.1512 4.7630 -13.9014 21 7 3.6000 5.9398 -13.6991 22 14 4.6332 4.2421 -15.6293 23 1 5.2293 2.8826 -15.5881 24 1 3.4280 4.2287 -16.4966 25 1 5.6262 5.2012 -16.1765 26 6 4.9384 2.2125 -10.8566 27 6 5.2848 1.3612 -9.8325 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8507 0.5684 0.8427 34 1 3.9784 2.1765 0.0902 35 1 5.7362 -0.2121 -0.5074 36 1 5.8632 1.3958 -1.2601 37 1 5.1756 -1.1703 -2.7608 38 1 6.7968 -0.4378 -2.7020 39 1 4.9617 1.5304 -3.5590 40 1 4.7642 2.1612 -5.9073 41 1 5.8737 -0.1248 -7.6244 42 1 4.2969 3.2766 -7.1998 43 1 3.6942 4.7896 -9.0381 44 1 3.4442 6.5374 -14.4471 45 1 5.1118 1.9211 -11.8819 46 1 5.7301 0.4024 -10.0534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067832661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:38 Heat of formation + Delta-G solvation = -117.088189 kcal Electronic energy + Delta-G solvation = -26517.524836 eV Core-core repulsion = 22373.701026 eV Total energy + Delta-G solvation = -4143.823810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.63434 -39.13638 -38.77391 -37.64087 -36.86412 -34.76009 -33.17059 -32.28517 -31.16142 -30.41042 -29.35237 -27.91832 -26.61861 -25.66687 -23.82577 -22.99891 -22.40907 -22.02739 -20.73168 -19.31601 -18.15353 -17.52472 -17.26470 -17.10147 -16.99607 -16.31012 -15.85933 -15.73440 -15.17752 -14.90758 -14.83710 -14.73025 -14.37613 -14.00988 -13.82275 -13.72691 -13.39757 -13.16772 -13.01101 -12.60959 -12.58681 -12.48667 -11.99411 -11.91744 -11.74317 -11.70531 -11.64066 -11.42539 -11.13449 -11.04599 -10.64234 -10.51948 -10.12981 -10.07314 -9.72638 -9.57669 -9.47610 -9.08000 -8.82761 -8.36175 -7.08949 -6.63863 -4.18814 1.11509 2.15361 2.59530 3.04546 3.05747 3.11438 3.13632 3.31449 3.35605 3.64571 3.83393 4.46243 4.53171 4.62865 4.70995 4.76994 4.87875 4.92590 4.93922 4.96624 4.99977 5.04568 5.06443 5.10823 5.25897 5.30855 5.32320 5.42787 5.55188 5.60200 5.69611 5.72651 6.03403 6.14542 6.39555 6.49481 6.52941 6.63766 6.67235 6.79413 6.81531 6.94177 7.15303 7.25787 7.30540 7.61961 7.65976 7.81772 8.40680 8.81204 9.48427 10.52943 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.001606 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.549017 B =17427.172137 C =18450.703681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.063 3.937 5 O -0.376 6.376 6 C 0.050 3.950 7 C 0.124 3.876 8 N -0.728 5.728 9 C 0.555 3.445 10 O -0.561 6.561 11 C -0.280 4.280 12 C 0.036 3.964 13 C -0.197 4.197 14 C -0.043 4.043 15 C -0.200 4.200 16 C 0.167 3.833 17 O -0.164 6.164 18 C -0.393 4.393 19 H 0.098 0.902 20 C 0.041 3.959 21 N -0.853 5.853 22 Si 0.945 3.055 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.242 4.242 27 C -0.035 4.035 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.402 0.598 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.273 0.727 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -6.955 25.476 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.013 4.013 5 O -0.295 6.295 6 C -0.027 4.027 7 C 0.000 4.000 8 N -0.380 5.380 9 C 0.347 3.653 10 O -0.442 6.442 11 C -0.301 4.301 12 C 0.016 3.984 13 C -0.198 4.198 14 C -0.062 4.062 15 C -0.219 4.219 16 C 0.110 3.890 17 O -0.065 6.065 18 C -0.468 4.468 19 H 0.115 0.885 20 C -0.165 4.165 21 N -0.486 5.486 22 Si 0.769 3.231 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.261 4.261 27 C -0.054 4.054 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.236 0.764 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.083 0.917 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.338 -7.504 25.006 26.110 hybrid contribution -0.055 0.571 -0.459 0.735 sum -0.393 -6.933 24.546 25.510 Atomic orbital electron populations 1.22759 0.80888 1.02977 0.99961 1.87956 1.19748 1.27217 1.95389 1.22566 0.92287 0.85648 1.01025 1.22526 0.93530 0.97537 0.87741 1.88025 1.21536 1.82077 1.37889 1.22788 0.82252 1.00177 0.97514 1.21287 1.00590 0.94056 0.84020 1.45755 1.65334 1.21397 1.05547 1.18407 0.77550 0.86491 0.82840 1.90770 1.45229 1.23779 1.84446 1.22436 1.13299 1.01730 0.92614 1.22279 0.88156 0.96408 0.91542 1.18473 1.12122 0.96755 0.92468 1.20888 0.95121 0.92419 0.97739 1.20151 1.10181 1.01640 0.89911 1.19611 0.90821 0.89502 0.89024 1.83905 1.65723 1.42432 1.14404 1.21524 1.41766 1.03390 0.80146 0.88491 1.25391 0.96240 0.94865 0.99990 1.70022 1.38277 1.07524 1.32740 0.85583 0.78608 0.79023 0.79900 1.18859 1.19937 1.19930 1.21103 1.09194 0.95829 0.99997 1.20992 0.95158 0.97714 0.91518 0.89517 0.94201 0.93821 0.91836 0.92172 0.92401 0.91660 0.91655 0.92549 0.90692 0.90126 0.76368 0.85934 0.85929 0.86410 0.86153 0.91680 0.85119 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.63 10.67 -40.08 -0.43 -4.06 16 3 C 0.06 0.42 6.32 37.16 0.23 0.65 16 4 C 0.06 0.41 6.32 37.16 0.23 0.64 16 5 O -0.38 -3.43 10.25 -40.08 -0.41 -3.84 16 6 C 0.05 0.35 6.07 37.15 0.23 0.57 16 7 C 0.12 1.20 6.06 -4.05 -0.02 1.18 16 8 N -0.73 -8.11 5.50 -61.76 -0.34 -8.45 16 9 C 0.56 8.16 7.74 -13.04 -0.10 8.06 16 10 O -0.56 -10.18 16.23 5.17 0.08 -10.09 16 11 C -0.28 -3.97 9.41 -37.50 -0.35 -4.32 16 12 C 0.04 0.56 9.45 -37.20 -0.35 0.21 16 13 C -0.20 -3.43 5.87 -105.03 -0.62 -4.04 16 14 C -0.04 -0.75 9.40 -39.14 -0.37 -1.12 16 15 C -0.20 -4.03 9.97 -39.46 -0.39 -4.42 16 16 C 0.17 3.86 6.66 -38.89 -0.26 3.60 16 17 O -0.16 -4.46 9.74 0.73 0.01 -4.46 16 18 C -0.39 -10.49 9.48 30.91 0.29 -10.20 16 19 H 0.10 2.39 5.18 -52.49 -0.27 2.12 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.85 -23.95 13.67 55.48 0.76 -23.19 16 22 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 26 C -0.24 -5.06 9.14 -39.47 -0.36 -5.42 16 27 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.27 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 3.63 8.45 -40.82 -0.34 3.29 16 40 H 0.12 1.50 6.07 -52.48 -0.32 1.18 16 41 H 0.12 1.91 7.52 -52.48 -0.39 1.52 16 42 H 0.12 1.67 6.16 -52.48 -0.32 1.34 16 43 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.13 2.71 5.62 -52.49 -0.29 2.41 16 46 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -33.32 398.10 -7.14 -40.46 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.58 Total: 6.36 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.21 Total: -13.34 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.42 Total: -31.65 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.75 Total: -22.45 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.32 -7.14 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067832661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.626 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds