Wall clock time and date at job start Tue Mar 31 2020 19:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00248 * 2 1 4 4 C 1.52997 * 109.47115 * 179.97438 * 3 2 1 5 5 O 1.42893 * 109.47176 * 65.00342 * 4 3 2 6 6 C 1.42898 * 114.00437 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47643 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.47283 * 64.99486 * 7 6 5 9 9 C 1.34780 * 120.00068 * 179.72438 * 8 7 6 10 10 O 1.21718 * 119.99956 * 0.02562 * 9 8 7 11 11 C 1.46256 * 119.99800 * 180.02562 * 9 8 7 12 12 C 1.35022 * 119.99894 * 180.02562 * 11 9 8 13 13 C 1.46957 * 120.00300 * 180.02562 * 12 11 9 14 14 C 1.40029 * 120.09915 * 359.72225 * 13 12 11 15 15 C 1.37601 * 119.89798 * 179.69970 * 14 13 12 16 16 C 1.39180 * 120.09887 * 0.60088 * 15 14 13 17 17 O 1.35565 * 119.89376 * 179.69676 * 16 15 14 18 18 C 1.34792 * 116.99720 * 174.42235 * 17 16 15 19 19 H 1.07998 * 119.99415 * 5.05109 * 18 17 16 20 20 C 1.38711 * 120.00019 * 185.05884 * 18 17 16 21 21 N 1.31509 * 120.00308 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46612 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47242 * 119.99850 * 22 20 18 25 25 H 1.48501 * 109.46802 * 239.99820 * 22 20 18 26 26 C 1.39171 * 120.20408 * 359.67315 * 16 15 14 27 27 C 1.37600 * 120.10110 * 0.02662 * 26 16 15 28 28 H 1.08997 * 109.47383 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47589 * 300.00494 * 1 2 3 30 30 H 1.09008 * 109.46839 * 60.00529 * 1 2 3 31 31 H 1.09000 * 109.46557 * 59.99448 * 3 2 1 32 32 H 1.08998 * 109.47016 * 299.99758 * 3 2 1 33 33 H 1.09000 * 109.47231 * 305.00018 * 4 3 2 34 34 H 1.09001 * 109.46792 * 184.99750 * 4 3 2 35 35 H 1.08998 * 109.46893 * 59.99195 * 6 5 4 36 36 H 1.09004 * 109.46777 * 300.00154 * 6 5 4 37 37 H 1.08999 * 109.46934 * 304.99815 * 7 6 5 38 38 H 1.09000 * 109.47417 * 184.99849 * 7 6 5 39 39 H 0.97000 * 119.99919 * 0.02562 * 8 7 6 40 40 H 1.08004 * 120.00191 * 0.02562 * 11 9 8 41 41 H 1.08004 * 119.99914 * 359.97438 * 12 11 9 42 42 H 1.08004 * 120.05337 * 359.97438 * 14 13 12 43 43 H 1.07999 * 119.94808 * 180.27028 * 15 14 13 44 44 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 45 45 H 1.08001 * 119.94985 * 180.02562 * 26 16 15 46 46 H 1.07997 * 120.05103 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4196 -1.3221 7 6 5.7266 -0.2351 -2.6613 8 7 5.3585 0.6673 -3.7550 9 6 5.5767 0.3007 -5.0335 10 8 6.0792 -0.7803 -5.2794 11 6 5.2097 1.2019 -6.1254 12 6 5.4278 0.8344 -7.4063 13 6 5.0596 1.7401 -8.5035 14 6 4.4770 2.9822 -8.2232 15 6 4.1396 3.8296 -9.2535 16 6 4.3649 3.4484 -10.5730 17 8 4.0252 4.2840 -11.5850 18 6 4.3735 3.9083 -12.8318 19 1 4.8258 2.9417 -12.9978 20 6 4.1512 4.7630 -13.9014 21 7 3.6000 5.9398 -13.6991 22 14 4.6332 4.2421 -15.6293 23 1 5.2293 2.8826 -15.5881 24 1 3.4280 4.2287 -16.4966 25 1 5.6262 5.2012 -16.1765 26 6 4.9384 2.2125 -10.8566 27 6 5.2848 1.3612 -9.8325 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8507 0.5684 0.8427 34 1 3.9784 2.1765 0.0902 35 1 5.7362 -0.2121 -0.5074 36 1 5.8632 1.3958 -1.2601 37 1 5.1756 -1.1703 -2.7608 38 1 6.7968 -0.4378 -2.7020 39 1 4.9617 1.5304 -3.5590 40 1 4.7642 2.1612 -5.9073 41 1 5.8737 -0.1248 -7.6244 42 1 4.2969 3.2766 -7.1998 43 1 3.6942 4.7896 -9.0381 44 1 3.4442 6.5374 -14.4471 45 1 5.1118 1.9211 -11.8819 46 1 5.7301 0.4024 -10.0534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067832661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:37 Heat of formation + Delta-G solvation = -140.568848 kcal Electronic energy + Delta-G solvation = -26518.543034 eV Core-core repulsion = 22373.701026 eV Total energy + Delta-G solvation = -4144.842008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.91825 -40.59122 -39.41235 -38.51874 -38.21395 -35.72909 -34.72760 -33.99125 -31.97440 -31.79754 -30.27167 -29.16760 -27.49313 -27.11682 -24.99051 -23.77543 -23.47882 -23.21737 -22.03417 -20.69181 -19.75246 -18.84791 -18.28853 -18.07132 -17.72074 -17.19816 -16.51164 -16.46592 -16.43056 -16.21776 -16.01212 -15.81196 -15.77221 -15.60423 -15.24760 -14.69477 -14.60902 -14.43881 -14.10316 -13.94188 -13.60091 -13.33520 -13.21205 -13.16177 -12.99239 -12.72693 -12.57104 -12.50761 -12.22605 -12.18409 -12.10316 -11.93863 -11.20764 -11.11721 -11.00385 -10.64722 -10.58065 -10.55523 -10.05557 -9.88777 -8.67238 -8.52107 -6.18218 -0.23490 0.58934 1.14477 1.36143 1.45417 1.54071 2.15391 2.30007 2.39625 2.66942 2.86848 2.88685 3.18326 3.42733 3.82048 3.91858 3.96018 4.09272 4.15490 4.21424 4.25685 4.31881 4.36757 4.44440 4.46852 4.48774 4.51148 4.55840 4.60413 4.66409 4.73023 4.82798 4.86663 4.89876 4.95100 5.03811 5.20132 5.29394 5.34143 5.48519 5.59670 5.64306 5.82260 5.97801 6.10927 6.16818 6.30639 6.62352 6.92441 7.30430 7.69563 8.70188 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.001606 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.549017 B =17427.172137 C =18450.703681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.054 3.946 4 C 0.060 3.940 5 O -0.405 6.405 6 C 0.055 3.945 7 C 0.121 3.879 8 N -0.711 5.711 9 C 0.548 3.452 10 O -0.598 6.598 11 C -0.244 4.244 12 C 0.014 3.986 13 C -0.170 4.170 14 C -0.038 4.038 15 C -0.206 4.206 16 C 0.130 3.870 17 O -0.220 6.220 18 C -0.417 4.417 19 H 0.106 0.894 20 C -0.019 4.019 21 N -0.914 5.914 22 Si 1.019 2.981 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.268 1.268 26 C -0.249 4.249 27 C -0.041 4.041 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.415 0.585 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.123 0.877 44 H 0.275 0.725 45 H 0.125 0.875 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -8.095 28.659 29.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.022 4.022 4 C -0.016 4.016 5 O -0.325 6.325 6 C -0.021 4.021 7 C -0.003 4.003 8 N -0.362 5.362 9 C 0.339 3.661 10 O -0.481 6.481 11 C -0.265 4.265 12 C -0.006 4.006 13 C -0.171 4.171 14 C -0.056 4.056 15 C -0.226 4.226 16 C 0.078 3.922 17 O -0.125 6.125 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.217 4.217 21 N -0.551 5.551 22 Si 0.838 3.162 23 H -0.174 1.174 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.268 4.268 27 C -0.059 4.059 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.252 0.748 40 H 0.169 0.831 41 H 0.142 0.858 42 H 0.177 0.823 43 H 0.141 0.859 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.532 -8.665 28.283 29.586 hybrid contribution -0.265 0.659 -0.814 1.080 sum 0.267 -8.007 27.470 28.614 Atomic orbital electron populations 1.22879 0.79844 1.03509 1.00771 1.87907 1.21145 1.28948 1.95599 1.22774 0.92640 0.84864 1.01897 1.22712 0.93326 0.98778 0.86828 1.87977 1.22525 1.82708 1.39289 1.22789 0.81758 1.01441 0.96113 1.21413 1.00683 0.93307 0.84904 1.45702 1.63681 1.21990 1.04840 1.18554 0.77489 0.86033 0.84029 1.90771 1.46917 1.25324 1.85129 1.22766 1.09739 1.02043 0.91937 1.22168 0.90335 0.96584 0.91504 1.18784 1.09030 0.96522 0.92743 1.21288 0.93738 0.91635 0.98901 1.20423 1.10122 1.02499 0.89519 1.20184 0.92229 0.90245 0.89587 1.83886 1.69045 1.44433 1.15125 1.21942 1.42470 1.04045 0.80764 0.87716 1.26605 0.96090 0.94755 1.04276 1.70152 1.41562 1.09304 1.34052 0.84522 0.78428 0.79139 0.74110 1.17441 1.19307 1.19295 1.21199 1.09255 0.95664 1.00672 1.21315 0.94841 0.98463 0.91250 0.89255 0.92513 0.93849 0.89535 0.92659 0.92069 0.89082 0.90029 0.90290 0.92718 0.89521 0.74788 0.83131 0.85788 0.82277 0.85867 0.91598 0.85766 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.28 10.67 -144.34 -1.54 -8.82 16 3 C 0.05 0.62 6.32 71.98 0.45 1.08 16 4 C 0.06 0.59 6.32 71.98 0.45 1.05 16 5 O -0.40 -6.25 10.25 -144.34 -1.48 -7.73 16 6 C 0.06 0.59 6.07 71.98 0.44 1.03 16 7 C 0.12 2.01 6.06 86.38 0.52 2.53 16 8 N -0.71 -13.32 5.50 -467.51 -2.57 -15.89 16 9 C 0.55 14.27 7.74 86.33 0.67 14.94 16 10 O -0.60 -20.34 16.23 -4.41 -0.07 -20.42 16 11 C -0.24 -5.85 9.41 23.61 0.22 -5.63 16 12 C 0.01 0.39 9.45 23.82 0.23 0.61 16 13 C -0.17 -5.40 5.87 -20.13 -0.12 -5.52 16 14 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 15 C -0.21 -8.29 9.97 22.35 0.22 -8.06 16 16 C 0.13 6.22 6.66 22.72 0.15 6.37 16 17 O -0.22 -12.78 9.74 -20.32 -0.20 -12.98 16 18 C -0.42 -23.54 9.48 67.93 0.64 -22.90 16 19 H 0.11 5.43 5.18 -2.91 -0.02 5.41 16 20 C -0.02 -1.03 5.49 84.85 0.47 -0.56 16 21 N -0.91 -54.50 13.67 21.62 0.30 -54.20 16 22 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 23 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 24 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 25 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 26 C -0.25 -10.55 9.14 22.34 0.20 -10.34 16 27 C -0.04 -1.41 9.78 22.55 0.22 -1.18 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.42 5.67 8.45 -92.71 -0.78 4.88 16 40 H 0.15 2.75 6.07 -2.91 -0.02 2.74 16 41 H 0.12 3.50 7.52 -2.91 -0.02 3.48 16 42 H 0.16 3.67 6.16 -2.91 -0.02 3.65 16 43 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 44 H 0.27 14.95 8.31 -92.71 -0.77 14.17 16 45 H 0.12 5.33 5.62 -2.91 -0.02 5.31 16 46 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -77.83 398.10 2.92 -74.92 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.22 Total: 27.44 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 6.24 Total: -26.03 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -2.27 Total: -70.09 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -3.29 Total: -49.95 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -77.83 2.92 -74.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067832661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.652 kcal (2) G-P(sol) polarization free energy of solvation -77.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds