Wall clock time and date at job start Tue Mar 31 2020 19:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34746 * 117.00453 * 2 1 4 4 O 1.21511 * 119.99564 * 359.97438 * 3 2 1 5 5 C 1.47475 * 120.00494 * 180.02562 * 3 2 1 6 6 C 1.39788 * 120.09067 * 179.97438 * 5 3 2 7 7 C 1.37685 * 119.90263 * 180.02562 * 6 5 3 8 8 C 1.39012 * 120.09199 * 359.97438 * 7 6 5 9 9 O 1.35698 * 119.90778 * 179.97438 * 8 7 6 10 10 C 1.42894 * 117.00500 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47594 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.46938 * 305.00304 * 11 10 9 13 13 O 1.42901 * 109.46745 * 65.00308 * 11 10 9 14 14 C 1.52993 * 109.47208 * 185.00129 * 11 10 9 15 15 N 1.46503 * 109.46871 * 180.02562 * 14 11 10 16 16 C 1.36933 * 120.00231 * 90.00541 * 15 14 11 17 17 H 1.08007 * 119.99389 * 304.38044 * 16 15 14 18 18 C 1.38805 * 120.00684 * 124.37208 * 16 15 14 19 19 N 1.31621 * 120.00244 * 164.89039 * 18 16 15 20 20 Si 1.86805 * 119.99943 * 344.89817 * 18 16 15 21 21 H 1.48500 * 109.47000 * 92.08700 * 20 18 16 22 22 H 1.48496 * 109.47525 * 212.08629 * 20 18 16 23 23 H 1.48507 * 109.47028 * 332.09205 * 20 18 16 24 24 C 1.46498 * 119.99759 * 269.99870 * 15 14 11 25 25 C 1.53003 * 117.49773 * 183.04309 * 24 15 14 26 26 C 1.53004 * 117.49707 * 114.41986 * 24 15 14 27 27 C 1.39014 * 120.18696 * 0.28277 * 8 7 6 28 28 C 1.37684 * 120.09334 * 359.44198 * 27 8 7 29 29 H 1.09004 * 109.46681 * 300.00414 * 1 2 3 30 30 H 1.08995 * 109.47034 * 60.00163 * 1 2 3 31 31 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.04941 * 0.02562 * 6 5 3 33 33 H 1.07999 * 119.95023 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47111 * 300.01121 * 10 9 8 35 35 H 1.09003 * 109.46933 * 60.00097 * 10 9 8 36 36 H 0.96694 * 114.00083 * 59.99916 * 13 11 10 37 37 H 1.09002 * 109.47282 * 300.00313 * 14 11 10 38 38 H 1.09003 * 109.47329 * 60.00445 * 14 11 10 39 39 H 0.96998 * 119.99467 * 180.02562 * 19 18 16 40 40 H 1.09005 * 115.55310 * 328.74463 * 24 15 14 41 41 H 1.09000 * 117.49702 * 359.97438 * 25 24 15 42 42 H 1.08996 * 117.50367 * 145.02542 * 25 24 15 43 43 H 1.08999 * 117.49966 * 214.97609 * 26 24 15 44 44 H 1.08994 * 117.49648 * 359.97438 * 26 24 15 45 45 H 1.08000 * 119.95433 * 179.72460 * 27 8 7 46 46 H 1.07999 * 120.04720 * 180.25671 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5365 1.2777 -0.0006 6 6 4.1731 2.5223 -0.0011 7 6 5.5483 2.5898 -0.0022 8 6 6.3035 1.4227 -0.0022 9 8 7.6586 1.4936 -0.0038 10 6 8.3731 0.2562 -0.0042 11 6 9.8773 0.5357 -0.0054 12 1 10.1262 1.1815 -0.8474 13 8 10.2425 1.1825 1.2154 14 6 10.6412 -0.7839 -0.1316 15 7 12.0815 -0.5163 -0.1321 16 6 12.7741 -0.4931 1.0489 17 1 12.4612 0.1658 1.8455 18 6 13.8779 -1.3166 1.2226 19 7 14.7149 -1.0949 2.2140 20 14 14.1758 -2.7393 0.0493 21 1 15.0528 -2.2895 -1.0615 22 1 14.8329 -3.8533 0.7787 23 1 12.8783 -3.2059 -0.5024 24 6 12.7810 -0.2735 -1.3963 25 6 14.2964 -0.0708 -1.3376 26 6 13.3757 1.1185 -1.6186 27 6 5.6743 0.1831 -0.0070 28 6 4.2996 0.1065 -0.0003 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5871 3.4295 -0.0007 33 1 6.0409 3.5509 -0.0030 34 1 8.1106 -0.3153 0.8861 35 1 8.1087 -0.3157 -0.8938 36 1 10.0492 0.6639 2.0083 37 1 10.3922 -1.4299 0.7104 38 1 10.3626 -1.2774 -1.0628 39 1 15.4864 -1.6701 2.3350 40 1 12.3756 -0.7923 -2.2651 41 1 14.7728 -0.1176 -0.3583 42 1 14.8883 -0.4561 -2.1677 43 1 13.3619 1.5155 -2.6336 44 1 13.2461 1.8538 -0.8245 45 1 6.2647 -0.7213 -0.0115 46 1 3.8117 -0.8569 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068959353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:25 Heat of formation + Delta-G solvation = -88.715993 kcal Electronic energy + Delta-G solvation = -28169.419150 eV Core-core repulsion = 24026.825650 eV Total energy + Delta-G solvation = -4142.593499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90316 -40.10970 -38.15413 -37.38581 -36.63126 -36.05544 -32.82527 -31.89662 -31.57407 -30.91410 -29.61550 -27.91125 -25.99539 -24.00168 -23.63092 -22.79563 -21.56028 -21.35663 -20.93039 -19.82726 -18.60627 -17.99464 -17.39188 -16.89176 -16.65073 -16.47071 -16.29789 -15.44208 -15.09359 -14.84706 -14.76410 -14.40344 -14.28189 -13.96480 -13.75158 -13.69974 -13.40466 -13.22864 -12.84481 -12.66177 -12.50623 -12.34425 -12.03860 -11.80787 -11.30655 -11.22249 -11.14395 -11.05149 -10.82947 -10.78615 -10.61142 -10.42563 -10.36612 -9.88755 -9.78219 -9.41513 -9.38073 -9.16002 -8.54745 -8.44730 -6.49627 -6.03441 -3.74236 0.48859 1.02944 2.27953 2.38993 2.96138 3.34856 3.44075 3.48717 3.49126 4.39486 4.47706 4.49185 4.54036 4.66745 4.74952 4.80637 4.82582 4.84842 4.86498 5.01604 5.09546 5.14346 5.20365 5.25978 5.29005 5.42775 5.66750 5.67620 5.76898 5.82394 5.85205 5.96649 5.97988 6.04037 6.11098 6.11625 6.27310 6.34796 6.50481 6.55899 6.57127 7.03326 7.17823 7.30099 7.45444 8.05427 8.23015 8.54220 8.95732 9.60413 10.07742 11.05137 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025199 B = 0.002032 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.879048 B =13775.341587 C =14137.629673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.514 3.486 4 O -0.514 6.514 5 C -0.182 4.182 6 C -0.012 4.012 7 C -0.169 4.169 8 C 0.178 3.822 9 O -0.294 6.294 10 C 0.022 3.978 11 C 0.092 3.908 12 H 0.099 0.901 13 O -0.536 6.536 14 C 0.125 3.875 15 N -0.561 5.561 16 C -0.280 4.280 17 H 0.079 0.921 18 C 0.054 3.946 19 N -0.896 5.896 20 Si 0.884 3.116 21 H -0.271 1.271 22 H -0.305 1.305 23 H -0.273 1.273 24 C 0.104 3.896 25 C -0.197 4.197 26 C -0.211 4.211 27 C -0.229 4.229 28 C -0.017 4.017 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.368 0.632 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.139 0.861 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.641 0.286 -6.260 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.361 3.639 4 O -0.404 6.404 5 C -0.183 4.183 6 C -0.031 4.031 7 C -0.187 4.187 8 C 0.130 3.870 9 O -0.205 6.205 10 C -0.054 4.054 11 C 0.029 3.971 12 H 0.117 0.883 13 O -0.340 6.340 14 C -0.002 4.002 15 N -0.280 5.280 16 C -0.408 4.408 17 H 0.096 0.904 18 C -0.149 4.149 19 N -0.535 5.535 20 Si 0.712 3.288 21 H -0.196 1.196 22 H -0.233 1.233 23 H -0.198 1.198 24 C -0.003 4.003 25 C -0.235 4.235 26 C -0.252 4.252 27 C -0.247 4.247 28 C -0.035 4.035 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.157 0.843 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.367 1.116 -6.547 23.332 hybrid contribution -0.121 -1.425 -0.298 1.460 sum -22.488 -0.308 -6.845 23.509 Atomic orbital electron populations 1.23271 0.76012 1.03743 1.02631 1.86545 1.23541 1.32828 1.84496 1.21132 0.89094 0.81319 0.72381 1.90832 1.66882 1.36006 1.46634 1.18903 0.88834 0.94977 1.15612 1.21027 0.93405 0.96821 0.91803 1.20430 0.92521 0.97645 1.08113 1.19548 0.83628 0.93891 0.89926 1.86218 1.14276 1.33844 1.86165 1.24016 0.94830 0.84640 1.01925 1.22834 0.86711 0.98229 0.89284 0.88307 1.86653 1.86185 1.46422 1.14712 1.21468 0.85770 0.92711 1.00236 1.43352 1.02088 1.80428 1.02088 1.18662 1.10501 1.19681 0.91996 0.90361 1.25911 0.96774 0.96815 0.95360 1.69867 1.13091 1.38622 1.31917 0.86823 0.78448 0.82389 0.81131 1.19644 1.23307 1.19764 1.21351 0.92699 0.96412 0.89865 1.23496 0.93554 1.02788 1.03641 1.23368 1.07729 0.93860 1.00225 1.21325 0.95527 0.97294 1.10571 1.21219 0.92955 0.97971 0.91358 0.91826 0.91841 0.87981 0.83968 0.83989 0.91383 0.91131 0.78529 0.91807 0.93517 0.92561 0.89624 0.86193 0.90778 0.91162 0.88974 0.84342 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.30 16 2 O -0.36 -3.36 9.81 -40.62 -0.40 -3.75 16 3 C 0.51 5.75 7.89 34.49 0.27 6.02 16 4 O -0.51 -6.84 16.13 -19.27 -0.31 -7.15 16 5 C -0.18 -1.92 5.87 -104.98 -0.62 -2.54 16 6 C -0.01 -0.13 9.59 -39.20 -0.38 -0.50 16 7 C -0.17 -1.81 9.97 -39.50 -0.39 -2.20 16 8 C 0.18 2.06 6.70 -39.01 -0.26 1.80 16 9 O -0.29 -3.91 10.09 -23.65 -0.24 -4.15 16 10 C 0.02 0.26 4.37 37.16 0.16 0.42 16 11 C 0.09 1.43 3.52 -26.73 -0.09 1.33 16 12 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 13 O -0.54 -9.72 12.09 -40.08 -0.48 -10.20 16 14 C 0.13 2.14 5.43 -4.04 -0.02 2.12 16 15 N -0.56 -12.19 2.00 -165.66 -0.33 -12.52 16 16 C -0.28 -7.24 8.72 -15.06 -0.13 -7.37 16 17 H 0.08 2.25 7.39 -52.48 -0.39 1.86 16 18 C 0.05 1.46 3.75 -17.43 -0.07 1.39 16 19 N -0.90 -25.98 13.97 55.49 0.78 -25.20 16 20 Si 0.88 21.20 24.86 -169.99 -4.23 16.97 16 21 H -0.27 -6.27 5.81 56.52 0.33 -5.94 16 22 H -0.31 -7.55 7.11 56.52 0.40 -7.14 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.10 2.14 5.16 -67.93 -0.35 1.79 16 25 C -0.20 -4.24 6.69 -26.73 -0.18 -4.42 16 26 C -0.21 -4.17 10.36 -26.72 -0.28 -4.45 16 27 C -0.23 -2.26 9.01 -39.50 -0.36 -2.62 16 28 C -0.02 -0.16 9.61 -39.20 -0.38 -0.53 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.14 1.32 7.64 -52.49 -0.40 0.92 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.07 0.71 7.66 -51.93 -0.40 0.32 16 35 H 0.07 0.70 7.64 -51.93 -0.40 0.31 16 36 H 0.37 5.74 9.04 45.56 0.41 6.15 16 37 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 38 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.12 3.02 5.09 -51.93 -0.26 2.75 16 42 H 0.07 1.46 7.86 -51.93 -0.41 1.05 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 45 H 0.14 1.15 6.28 -52.49 -0.33 0.82 16 46 H 0.14 1.04 7.60 -52.49 -0.40 0.64 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -32.05 381.82 -7.46 -39.50 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.00 Total: 9.20 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.00 Total: -8.45 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.44 Total: -37.72 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.43 Total: -25.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.23 Total: 16.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.05 -7.46 -39.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.215 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds