Wall clock time and date at job start Tue Mar 31 2020 19:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34746 * 117.00453 * 2 1 4 4 O 1.21511 * 119.99564 * 359.97438 * 3 2 1 5 5 C 1.47475 * 120.00494 * 180.02562 * 3 2 1 6 6 C 1.39788 * 120.09067 * 179.97438 * 5 3 2 7 7 C 1.37685 * 119.90263 * 180.02562 * 6 5 3 8 8 C 1.39012 * 120.09199 * 359.97438 * 7 6 5 9 9 O 1.35698 * 119.90778 * 179.97438 * 8 7 6 10 10 C 1.42894 * 117.00500 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47594 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.46938 * 305.00304 * 11 10 9 13 13 O 1.42901 * 109.46745 * 65.00308 * 11 10 9 14 14 C 1.52993 * 109.47208 * 185.00129 * 11 10 9 15 15 N 1.46503 * 109.46871 * 180.02562 * 14 11 10 16 16 C 1.36933 * 120.00231 * 90.00541 * 15 14 11 17 17 H 1.08007 * 119.99389 * 304.38044 * 16 15 14 18 18 C 1.38805 * 120.00684 * 124.37208 * 16 15 14 19 19 N 1.31621 * 120.00244 * 164.89039 * 18 16 15 20 20 Si 1.86805 * 119.99943 * 344.89817 * 18 16 15 21 21 H 1.48500 * 109.47000 * 92.08700 * 20 18 16 22 22 H 1.48496 * 109.47525 * 212.08629 * 20 18 16 23 23 H 1.48507 * 109.47028 * 332.09205 * 20 18 16 24 24 C 1.46498 * 119.99759 * 269.99870 * 15 14 11 25 25 C 1.53003 * 117.49773 * 183.04309 * 24 15 14 26 26 C 1.53004 * 117.49707 * 114.41986 * 24 15 14 27 27 C 1.39014 * 120.18696 * 0.28277 * 8 7 6 28 28 C 1.37684 * 120.09334 * 359.44198 * 27 8 7 29 29 H 1.09004 * 109.46681 * 300.00414 * 1 2 3 30 30 H 1.08995 * 109.47034 * 60.00163 * 1 2 3 31 31 H 1.08999 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.04941 * 0.02562 * 6 5 3 33 33 H 1.07999 * 119.95023 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47111 * 300.01121 * 10 9 8 35 35 H 1.09003 * 109.46933 * 60.00097 * 10 9 8 36 36 H 0.96694 * 114.00083 * 59.99916 * 13 11 10 37 37 H 1.09002 * 109.47282 * 300.00313 * 14 11 10 38 38 H 1.09003 * 109.47329 * 60.00445 * 14 11 10 39 39 H 0.96998 * 119.99467 * 180.02562 * 19 18 16 40 40 H 1.09005 * 115.55310 * 328.74463 * 24 15 14 41 41 H 1.09000 * 117.49702 * 359.97438 * 25 24 15 42 42 H 1.08996 * 117.50367 * 145.02542 * 25 24 15 43 43 H 1.08999 * 117.49966 * 214.97609 * 26 24 15 44 44 H 1.08994 * 117.49648 * 359.97438 * 26 24 15 45 45 H 1.08000 * 119.95433 * 179.72460 * 27 8 7 46 46 H 1.07999 * 120.04720 * 180.25671 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5365 1.2777 -0.0006 6 6 4.1731 2.5223 -0.0011 7 6 5.5483 2.5898 -0.0022 8 6 6.3035 1.4227 -0.0022 9 8 7.6586 1.4936 -0.0038 10 6 8.3731 0.2562 -0.0042 11 6 9.8773 0.5357 -0.0054 12 1 10.1262 1.1815 -0.8474 13 8 10.2425 1.1825 1.2154 14 6 10.6412 -0.7839 -0.1316 15 7 12.0815 -0.5163 -0.1321 16 6 12.7741 -0.4931 1.0489 17 1 12.4612 0.1658 1.8455 18 6 13.8779 -1.3166 1.2226 19 7 14.7149 -1.0949 2.2140 20 14 14.1758 -2.7393 0.0493 21 1 15.0528 -2.2895 -1.0615 22 1 14.8329 -3.8533 0.7787 23 1 12.8783 -3.2059 -0.5024 24 6 12.7810 -0.2735 -1.3963 25 6 14.2964 -0.0708 -1.3376 26 6 13.3757 1.1185 -1.6186 27 6 5.6743 0.1831 -0.0070 28 6 4.2996 0.1065 -0.0003 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.5871 3.4295 -0.0007 33 1 6.0409 3.5509 -0.0030 34 1 8.1106 -0.3153 0.8861 35 1 8.1087 -0.3157 -0.8938 36 1 10.0492 0.6639 2.0083 37 1 10.3922 -1.4299 0.7104 38 1 10.3626 -1.2774 -1.0628 39 1 15.4864 -1.6701 2.3350 40 1 12.3756 -0.7923 -2.2651 41 1 14.7728 -0.1176 -0.3583 42 1 14.8883 -0.4561 -2.1677 43 1 13.3619 1.5155 -2.6336 44 1 13.2461 1.8538 -0.8245 45 1 6.2647 -0.7213 -0.0115 46 1 3.8117 -0.8569 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068959353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:24 Heat of formation + Delta-G solvation = -109.604646 kcal Electronic energy + Delta-G solvation = -28170.324950 eV Core-core repulsion = 24026.825650 eV Total energy + Delta-G solvation = -4143.499299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71362 -40.97764 -39.45554 -38.55289 -37.56041 -37.27361 -34.58694 -33.61837 -32.45685 -31.77397 -30.85298 -28.54891 -27.39348 -25.39191 -24.57878 -23.81198 -23.20311 -22.48553 -21.79983 -21.53469 -19.45338 -18.90956 -18.69385 -18.20143 -17.62540 -17.41977 -17.33060 -16.69043 -16.48278 -16.22006 -15.81940 -15.69221 -15.34895 -15.11968 -14.97261 -14.52705 -14.44005 -14.38584 -14.11469 -13.79617 -13.54067 -13.46451 -13.34013 -12.97087 -12.93055 -12.55655 -12.17756 -12.14274 -12.04920 -11.97200 -11.82314 -11.76764 -11.67916 -11.65278 -11.37873 -10.89076 -10.80204 -10.43304 -10.17062 -9.38765 -8.31879 -8.03502 -5.78340 -0.32970 0.27345 1.44974 1.47209 1.49315 1.60601 1.69421 2.04770 2.51866 2.69904 3.05187 3.19262 3.43510 3.64515 3.69740 3.75555 3.81022 3.96550 4.09954 4.13958 4.26387 4.30932 4.32289 4.34068 4.35459 4.40383 4.44942 4.50977 4.57761 4.61546 4.71190 4.93458 4.94957 4.96926 4.99451 5.02738 5.18697 5.23010 5.26753 5.34129 5.36285 5.56503 5.57754 6.04623 6.32282 6.47931 6.65614 6.96836 7.17431 7.65002 8.15321 9.03160 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025199 B = 0.002032 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.879048 B =13775.341587 C =14137.629673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.515 3.485 4 O -0.543 6.543 5 C -0.192 4.192 6 C -0.015 4.015 7 C -0.176 4.176 8 C 0.162 3.838 9 O -0.316 6.316 10 C 0.030 3.970 11 C 0.097 3.903 12 H 0.085 0.915 13 O -0.567 6.567 14 C 0.121 3.879 15 N -0.575 5.575 16 C -0.260 4.260 17 H 0.034 0.966 18 C 0.004 3.996 19 N -0.949 5.949 20 Si 0.943 3.057 21 H -0.257 1.257 22 H -0.320 1.320 23 H -0.254 1.254 24 C 0.102 3.898 25 C -0.214 4.214 26 C -0.198 4.198 27 C -0.224 4.224 28 C -0.010 4.010 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.375 0.625 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.261 0.739 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.059 0.941 45 H 0.160 0.840 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.711 -1.665 -8.816 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.363 3.637 4 O -0.435 6.435 5 C -0.194 4.194 6 C -0.033 4.033 7 C -0.195 4.195 8 C 0.115 3.885 9 O -0.229 6.229 10 C -0.045 4.045 11 C 0.036 3.964 12 H 0.103 0.897 13 O -0.372 6.372 14 C -0.004 4.004 15 N -0.295 5.295 16 C -0.390 4.390 17 H 0.052 0.948 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.182 1.182 22 H -0.249 1.249 23 H -0.178 1.178 24 C -0.005 4.005 25 C -0.252 4.252 26 C -0.239 4.239 27 C -0.243 4.243 28 C -0.028 4.028 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.152 0.848 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.223 0.777 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.143 0.857 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.078 0.922 45 H 0.178 0.822 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.488 -0.841 -9.132 26.149 hybrid contribution 0.402 -0.708 0.523 0.967 sum -24.087 -1.548 -8.609 25.626 Atomic orbital electron populations 1.23581 0.74322 1.05888 1.02588 1.86531 1.25206 1.31702 1.83938 1.21262 0.89321 0.81442 0.71671 1.90816 1.67517 1.37000 1.48164 1.19062 0.88844 0.95574 1.15886 1.21100 0.93290 0.97236 0.91719 1.20534 0.92710 0.97941 1.08295 1.19707 0.82936 0.94846 0.90983 1.86155 1.15324 1.34600 1.86806 1.23839 0.92034 0.84523 1.04131 1.22649 0.89364 0.96707 0.87726 0.89743 1.86613 1.86912 1.47676 1.16013 1.21650 0.82920 0.93723 1.02133 1.43480 1.03942 1.80887 1.01175 1.18370 1.10292 1.17764 0.92562 0.94811 1.26507 0.96667 0.99271 0.96934 1.70011 1.14189 1.40095 1.34838 0.85860 0.79076 0.78702 0.79391 1.18198 1.24942 1.17823 1.21691 0.91722 0.96861 0.90226 1.23409 0.94554 1.04858 1.02391 1.23299 1.06546 0.92902 1.01107 1.21533 0.95804 0.97294 1.09622 1.21443 0.92771 0.98431 0.90173 0.91968 0.91877 0.84758 0.83603 0.83720 0.89747 0.88229 0.77730 0.91706 0.89895 0.92995 0.85725 0.90339 0.88443 0.87437 0.92222 0.82248 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.36 -6.01 9.81 -56.57 -0.55 -6.56 16 3 C 0.52 10.92 7.89 70.26 0.55 11.48 16 4 O -0.54 -14.22 16.13 19.80 0.32 -13.90 16 5 C -0.19 -3.78 5.87 -20.09 -0.12 -3.90 16 6 C -0.02 -0.30 9.59 22.51 0.22 -0.09 16 7 C -0.18 -3.64 9.97 22.32 0.22 -3.42 16 8 C 0.16 3.47 6.70 22.64 0.15 3.63 16 9 O -0.32 -7.90 10.09 -85.54 -0.86 -8.76 16 10 C 0.03 0.63 4.37 71.98 0.31 0.94 16 11 C 0.10 2.85 3.52 30.59 0.11 2.96 16 12 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 13 O -0.57 -20.82 12.09 -144.34 -1.75 -22.56 16 14 C 0.12 3.82 5.43 86.38 0.47 4.29 16 15 N -0.58 -24.16 2.00 -678.02 -1.35 -25.51 16 16 C -0.26 -13.71 8.72 84.03 0.73 -12.98 16 17 H 0.03 2.07 7.39 -2.91 -0.02 2.04 16 18 C 0.00 0.21 3.75 84.86 0.32 0.53 16 19 N -0.95 -57.39 13.97 21.65 0.30 -57.09 16 20 Si 0.94 43.38 24.86 68.60 1.71 45.09 16 21 H -0.26 -11.14 5.81 99.48 0.58 -10.56 16 22 H -0.32 -15.41 7.11 99.48 0.71 -14.71 16 23 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 24 C 0.10 3.88 5.16 44.99 0.23 4.12 16 25 C -0.21 -8.88 6.69 30.60 0.20 -8.67 16 26 C -0.20 -7.48 10.36 30.60 0.32 -7.16 16 27 C -0.22 -3.76 9.01 22.32 0.20 -3.56 16 28 C -0.01 -0.16 9.61 22.51 0.22 0.05 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.15 2.69 7.64 -2.91 -0.02 2.67 16 33 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.08 1.50 7.66 -2.39 -0.02 1.48 16 35 H 0.10 1.52 7.64 -2.39 -0.02 1.50 16 36 H 0.38 12.02 9.04 -74.06 -0.67 11.35 16 37 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 38 H 0.08 2.06 8.07 -2.39 -0.02 2.04 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.13 3.85 8.14 -2.38 -0.02 3.83 16 41 H 0.08 3.99 5.09 -2.39 -0.01 3.98 16 42 H 0.10 3.54 7.86 -2.39 -0.02 3.52 16 43 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.16 1.95 6.28 -2.91 -0.02 1.93 16 46 H 0.16 1.83 7.60 -2.91 -0.02 1.81 16 Total: -1.00 -72.65 381.82 3.35 -69.30 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.20 Total: 30.27 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.34 Total: -10.27 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -1.05 Total: -82.60 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -2.84 Total: -51.78 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.71 Total: 45.09 kcal Total: -72.65 3.35 -69.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.308 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds