Wall clock time and date at job start Tue Mar 31 2020 19:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00289 * 2 1 4 4 C 1.53004 * 109.47554 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.50970 * 304.89693 * 4 3 2 6 6 C 1.53292 * 109.51153 * 184.74408 * 4 3 2 7 7 N 1.47160 * 108.38238 * 187.77410 * 6 4 3 8 8 C 1.34775 * 120.98286 * 230.51404 * 7 6 4 9 9 O 1.21285 * 119.99597 * 0.02562 * 8 7 6 10 10 C 1.50695 * 119.99980 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46959 * 180.02562 * 10 8 7 12 12 C 1.38325 * 119.96761 * 90.00005 * 11 10 8 13 13 C 1.38276 * 120.13969 * 179.97438 * 12 11 10 14 14 C 1.38119 * 120.07199 * 0.02562 * 13 12 11 15 15 C 1.38860 * 119.92737 * 359.97438 * 14 13 12 16 16 O 1.35752 * 120.06885 * 179.97438 * 15 14 13 17 17 C 1.34833 * 116.99948 * 354.46775 * 16 15 14 18 18 H 1.07998 * 119.99810 * 5.05683 * 17 16 15 19 19 C 1.38652 * 119.99814 * 185.05409 * 17 16 15 20 20 N 1.31558 * 120.00203 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99794 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47095 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47178 * 120.00063 * 21 19 17 24 24 H 1.48498 * 109.46854 * 239.99855 * 21 19 17 25 25 C 1.38073 * 119.96395 * 269.72498 * 11 10 8 26 26 C 1.47150 * 118.03511 * 50.53489 * 7 6 4 27 27 C 1.53302 * 108.38515 * 309.46639 * 26 7 6 28 28 O 1.42957 * 109.51112 * 64.99791 * 4 3 2 29 29 H 1.09001 * 109.46727 * 60.00505 * 1 2 3 30 30 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47057 * 300.00380 * 1 2 3 32 32 H 1.09005 * 109.46938 * 299.99539 * 3 2 1 33 33 H 1.09000 * 109.47516 * 59.99565 * 3 2 1 34 34 H 1.08999 * 109.68670 * 307.49632 * 6 4 3 35 35 H 1.08995 * 109.68483 * 68.05374 * 6 4 3 36 36 H 1.08995 * 109.46982 * 299.99734 * 10 8 7 37 37 H 1.08994 * 109.47511 * 60.00038 * 10 8 7 38 38 H 1.08007 * 119.92970 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.96001 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.03701 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00090 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.04048 * 0.02562 * 25 11 10 43 43 H 1.09002 * 109.68011 * 189.74377 * 26 7 6 44 44 H 1.08997 * 109.68269 * 69.19000 * 26 7 6 45 45 H 1.08998 * 109.51288 * 292.37857 * 27 26 7 46 46 H 1.08995 * 109.51166 * 172.22570 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8517 0.5701 0.8435 6 6 4.1595 2.5797 0.1201 7 7 5.6136 2.4555 -0.0695 8 6 6.4771 3.0004 0.8101 9 8 6.0590 3.6037 1.7757 10 6 7.9618 2.8603 0.5939 11 6 8.6996 3.5527 1.7107 12 6 9.0341 2.8529 2.8561 13 6 9.7115 3.4846 3.8828 14 6 10.0559 4.8172 3.7677 15 6 9.7216 5.5225 2.6192 16 8 10.0582 6.8325 2.5034 17 6 10.6133 7.4197 3.5828 18 1 10.8467 6.8309 4.4575 19 6 10.8845 8.7794 3.5696 20 7 10.6008 9.4965 2.5038 21 14 11.6542 9.5927 5.0648 22 1 11.8744 8.5749 6.1235 23 1 12.9545 10.2002 4.6834 24 1 10.7451 10.6496 5.5762 25 6 9.0461 4.8836 1.5873 26 6 6.0969 1.7191 -1.2483 27 6 5.3784 0.3659 -1.3011 28 8 3.9671 0.5790 -1.2203 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 1.6887 1.8464 0.8899 34 1 3.7441 3.2346 -0.6457 35 1 3.9521 2.9913 1.1078 36 1 8.2291 1.8037 0.5827 37 1 8.2348 3.3143 -0.3586 38 1 8.7662 1.8107 2.9483 39 1 9.9715 2.9353 4.7756 40 1 10.5853 5.3099 4.5698 41 1 10.7902 10.4477 2.4947 42 1 8.7883 5.4285 0.6912 43 1 7.1723 1.5608 -1.1667 44 1 5.8764 2.2873 -2.1519 45 1 5.7020 -0.2511 -0.4629 46 1 5.6176 -0.1370 -2.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089833430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:48 Heat of formation + Delta-G solvation = -116.178980 kcal Electronic energy + Delta-G solvation = -28354.219179 eV Core-core repulsion = 24210.434796 eV Total energy + Delta-G solvation = -4143.784384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60721 -39.20213 -38.55184 -37.76081 -36.43842 -34.87462 -32.98880 -32.30124 -31.83958 -29.23270 -28.91522 -27.96662 -26.72131 -25.42186 -24.96804 -23.63941 -21.91421 -21.58756 -20.85021 -19.31209 -17.62776 -17.39246 -17.25752 -16.96048 -16.83691 -16.11294 -15.70815 -15.63686 -15.48087 -15.07925 -14.94296 -14.50143 -14.41782 -14.33997 -13.68649 -13.65249 -13.41120 -13.23729 -12.83259 -12.72195 -12.48212 -12.32927 -12.06917 -11.95005 -11.81238 -11.52648 -11.45201 -11.25463 -11.00907 -10.82908 -10.73169 -10.58607 -10.42681 -10.39766 -10.06425 -9.76144 -9.29878 -8.80474 -8.76520 -8.03882 -7.18303 -6.40619 -3.99516 2.08959 2.41818 2.64596 2.72687 3.14867 3.16655 3.21999 3.24687 3.42512 3.99874 4.37900 4.41052 4.55654 4.62953 4.67283 4.79038 4.81931 4.92041 4.95020 4.98098 5.02159 5.07354 5.12652 5.18986 5.19069 5.28868 5.31431 5.40220 5.45440 5.48599 5.61745 5.67249 5.77175 5.95680 6.16393 6.21766 6.37001 6.68407 6.71207 6.80923 6.94655 7.11038 7.19394 7.29194 7.40393 7.47638 7.85864 8.04628 8.17683 9.05317 9.76159 10.77782 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.002091 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.422873 B =13384.914877 C =13720.801769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.071 3.929 4 C 0.081 3.919 5 H 0.072 0.928 6 C 0.086 3.914 7 N -0.624 5.624 8 C 0.519 3.481 9 O -0.514 6.514 10 C -0.091 4.091 11 C -0.034 4.034 12 C -0.196 4.196 13 C -0.074 4.074 14 C -0.230 4.230 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.174 4.174 26 C 0.071 3.929 27 C 0.048 3.952 28 O -0.369 6.369 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.877 -19.078 -8.143 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.090 0.910 6 C -0.037 4.037 7 N -0.361 5.361 8 C 0.308 3.692 9 O -0.387 6.387 10 C -0.131 4.131 11 C -0.035 4.035 12 C -0.215 4.215 13 C -0.093 4.093 14 C -0.249 4.249 15 C 0.101 3.899 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.193 4.193 26 C -0.052 4.052 27 C -0.030 4.030 28 O -0.287 6.287 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.075 0.925 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.097 -18.529 -7.996 24.617 hybrid contribution 0.343 0.698 0.898 1.188 sum -13.754 -17.831 -7.098 23.612 Atomic orbital electron populations 1.22762 0.80820 1.02901 1.00061 1.87925 1.19752 1.27134 1.95432 1.22452 0.91169 0.85591 1.01433 1.22444 0.93147 0.93740 0.88450 0.90963 1.22081 0.80653 0.96323 1.04615 1.48154 1.05831 1.56434 1.25715 1.20839 0.88662 0.77970 0.81735 1.90761 1.79166 1.39923 1.28843 1.20612 0.90321 1.02293 0.99862 1.18651 0.97481 0.93138 0.94242 1.20337 1.06971 0.99054 0.95187 1.20677 0.97054 0.94163 0.97372 1.21179 1.08534 0.95131 1.00104 1.19273 0.91911 0.85761 0.92934 1.83976 1.68810 1.17579 1.38002 1.21366 1.39703 0.92063 0.93488 0.89061 1.25282 0.97452 0.95254 0.98622 1.70050 1.44764 1.07354 1.27786 0.85649 0.78585 0.79309 0.79883 1.19121 1.20190 1.20185 1.19935 1.05627 0.93936 0.99813 1.22491 1.00414 0.93500 0.88841 1.22997 0.81341 0.95469 1.03182 1.88009 1.22081 1.81192 1.37436 0.93932 0.89518 0.93991 0.92034 0.91299 0.90578 0.87748 0.88372 0.88156 0.87991 0.87460 0.85591 0.92159 0.86849 0.88274 0.90277 0.92450 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.82 10.67 -39.97 -0.43 -4.25 16 3 C 0.07 0.60 5.60 37.16 0.21 0.81 16 4 C 0.08 0.79 3.06 -26.58 -0.08 0.71 16 5 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 6 C 0.09 0.91 5.93 -3.53 -0.02 0.89 16 7 N -0.62 -7.10 3.02 -172.27 -0.52 -7.62 16 8 C 0.52 7.71 7.70 -10.99 -0.08 7.63 16 9 O -0.51 -10.08 15.50 5.55 0.09 -9.99 16 10 C -0.09 -1.22 4.20 -29.04 -0.12 -1.34 16 11 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 12 C -0.20 -3.57 9.70 -39.54 -0.38 -3.95 16 13 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 14 C -0.23 -5.24 9.17 -39.40 -0.36 -5.60 16 15 C 0.15 3.90 6.65 -39.10 -0.26 3.64 16 16 O -0.18 -5.29 9.76 0.03 0.00 -5.29 16 17 C -0.39 -11.19 9.49 30.89 0.29 -10.90 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 21 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 C -0.17 -3.83 9.64 -39.39 -0.38 -4.21 16 26 C 0.07 0.55 6.54 -3.53 -0.02 0.53 16 27 C 0.05 0.35 6.99 37.31 0.26 0.62 16 28 O -0.37 -3.75 10.35 -39.97 -0.41 -4.16 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 1.23 7.08 -51.93 -0.37 0.86 16 36 H 0.10 0.99 7.60 -51.93 -0.39 0.60 16 37 H 0.10 1.14 7.96 -51.93 -0.41 0.73 16 38 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 40 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.10 0.59 6.05 -51.93 -0.31 0.28 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -36.47 382.86 -7.25 -43.72 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.69 Total: 2.77 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -0.79 Total: -11.84 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.24 Total: -32.70 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.75 Total: -23.69 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.47 -7.25 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.457 kcal (2) G-P(sol) polarization free energy of solvation -36.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds