Wall clock time and date at job start Tue Mar 31 2020 19:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00289 * 2 1 4 4 C 1.53004 * 109.47554 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.50970 * 304.89693 * 4 3 2 6 6 C 1.53292 * 109.51153 * 184.74408 * 4 3 2 7 7 N 1.47160 * 108.38238 * 187.77410 * 6 4 3 8 8 C 1.34775 * 120.98286 * 230.51404 * 7 6 4 9 9 O 1.21285 * 119.99597 * 0.02562 * 8 7 6 10 10 C 1.50695 * 119.99980 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46959 * 180.02562 * 10 8 7 12 12 C 1.38325 * 119.96761 * 90.00005 * 11 10 8 13 13 C 1.38276 * 120.13969 * 179.97438 * 12 11 10 14 14 C 1.38119 * 120.07199 * 0.02562 * 13 12 11 15 15 C 1.38860 * 119.92737 * 359.97438 * 14 13 12 16 16 O 1.35752 * 120.06885 * 179.97438 * 15 14 13 17 17 C 1.34833 * 116.99948 * 354.46775 * 16 15 14 18 18 H 1.07998 * 119.99810 * 5.05683 * 17 16 15 19 19 C 1.38652 * 119.99814 * 185.05409 * 17 16 15 20 20 N 1.31558 * 120.00203 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99794 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47095 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47178 * 120.00063 * 21 19 17 24 24 H 1.48498 * 109.46854 * 239.99855 * 21 19 17 25 25 C 1.38073 * 119.96395 * 269.72498 * 11 10 8 26 26 C 1.47150 * 118.03511 * 50.53489 * 7 6 4 27 27 C 1.53302 * 108.38515 * 309.46639 * 26 7 6 28 28 O 1.42957 * 109.51112 * 64.99791 * 4 3 2 29 29 H 1.09001 * 109.46727 * 60.00505 * 1 2 3 30 30 H 1.09000 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47057 * 300.00380 * 1 2 3 32 32 H 1.09005 * 109.46938 * 299.99539 * 3 2 1 33 33 H 1.09000 * 109.47516 * 59.99565 * 3 2 1 34 34 H 1.08999 * 109.68670 * 307.49632 * 6 4 3 35 35 H 1.08995 * 109.68483 * 68.05374 * 6 4 3 36 36 H 1.08995 * 109.46982 * 299.99734 * 10 8 7 37 37 H 1.08994 * 109.47511 * 60.00038 * 10 8 7 38 38 H 1.08007 * 119.92970 * 0.02562 * 12 11 10 39 39 H 1.08002 * 119.96001 * 180.02562 * 13 12 11 40 40 H 1.07997 * 120.03701 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00090 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.04048 * 0.02562 * 25 11 10 43 43 H 1.09002 * 109.68011 * 189.74377 * 26 7 6 44 44 H 1.08997 * 109.68269 * 69.19000 * 26 7 6 45 45 H 1.08998 * 109.51288 * 292.37857 * 27 26 7 46 46 H 1.08995 * 109.51166 * 172.22570 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8517 0.5701 0.8435 6 6 4.1595 2.5797 0.1201 7 7 5.6136 2.4555 -0.0695 8 6 6.4771 3.0004 0.8101 9 8 6.0590 3.6037 1.7757 10 6 7.9618 2.8603 0.5939 11 6 8.6996 3.5527 1.7107 12 6 9.0341 2.8529 2.8561 13 6 9.7115 3.4846 3.8828 14 6 10.0559 4.8172 3.7677 15 6 9.7216 5.5225 2.6192 16 8 10.0582 6.8325 2.5034 17 6 10.6133 7.4197 3.5828 18 1 10.8467 6.8309 4.4575 19 6 10.8845 8.7794 3.5696 20 7 10.6008 9.4965 2.5038 21 14 11.6542 9.5927 5.0648 22 1 11.8744 8.5749 6.1235 23 1 12.9545 10.2002 4.6834 24 1 10.7451 10.6496 5.5762 25 6 9.0461 4.8836 1.5873 26 6 6.0969 1.7191 -1.2483 27 6 5.3784 0.3659 -1.3011 28 8 3.9671 0.5790 -1.2203 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 1.6887 1.8464 0.8899 34 1 3.7441 3.2346 -0.6457 35 1 3.9521 2.9913 1.1078 36 1 8.2291 1.8037 0.5827 37 1 8.2348 3.3143 -0.3586 38 1 8.7662 1.8107 2.9483 39 1 9.9715 2.9353 4.7756 40 1 10.5853 5.3099 4.5698 41 1 10.7902 10.4477 2.4947 42 1 8.7883 5.4285 0.6912 43 1 7.1723 1.5608 -1.1667 44 1 5.8764 2.2873 -2.1519 45 1 5.7020 -0.2511 -0.4629 46 1 5.6176 -0.1370 -2.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089833430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:47 Heat of formation + Delta-G solvation = -142.249766 kcal Electronic energy + Delta-G solvation = -28355.349694 eV Core-core repulsion = 24210.434796 eV Total energy + Delta-G solvation = -4144.914898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58828 -40.72098 -39.70728 -38.51274 -38.12490 -35.82578 -34.36392 -33.85342 -33.08884 -30.91795 -29.66202 -29.10145 -27.65884 -27.20249 -25.96246 -24.33901 -23.30995 -22.93950 -22.18762 -20.39993 -19.42669 -18.76444 -18.38402 -17.95639 -17.58317 -17.01022 -16.73432 -16.70630 -16.41390 -16.23613 -16.09821 -16.03464 -15.76799 -15.50876 -15.14887 -14.99701 -14.52629 -14.40049 -14.25185 -14.03040 -13.60383 -13.42875 -13.19372 -13.00191 -12.88786 -12.71380 -12.56049 -12.47034 -12.32391 -12.23457 -12.08785 -12.05542 -11.75089 -11.23846 -11.20345 -10.93685 -10.79983 -10.67874 -9.67110 -9.63489 -8.98593 -8.47845 -6.16229 0.50009 0.74665 1.33365 1.42209 1.52228 1.55045 1.78159 2.16906 2.61528 2.77759 2.82813 3.12926 3.42531 3.61647 3.71974 3.84287 3.89433 3.98308 4.07122 4.08955 4.21184 4.29949 4.32254 4.34511 4.40435 4.45865 4.50926 4.55564 4.56824 4.58492 4.60391 4.72912 4.74672 4.83341 4.86727 4.94770 5.05517 5.12507 5.29001 5.32697 5.64010 5.71802 5.74198 6.02295 6.08182 6.17181 6.19610 6.28791 6.96873 7.09435 7.78356 8.75949 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.002091 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.422873 B =13384.914877 C =13720.801769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.070 3.930 4 C 0.089 3.911 5 H 0.061 0.939 6 C 0.085 3.915 7 N -0.618 5.618 8 C 0.517 3.483 9 O -0.575 6.575 10 C -0.088 4.088 11 C -0.026 4.026 12 C -0.180 4.180 13 C -0.074 4.074 14 C -0.246 4.246 15 C 0.111 3.889 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.192 4.192 26 C 0.065 3.935 27 C 0.044 3.956 28 O -0.384 6.384 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.145 0.855 37 H 0.124 0.876 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 -22.344 -8.312 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.007 4.007 4 C 0.030 3.970 5 H 0.079 0.921 6 C -0.038 4.038 7 N -0.352 5.352 8 C 0.307 3.693 9 O -0.453 6.453 10 C -0.127 4.127 11 C -0.027 4.027 12 C -0.198 4.198 13 C -0.091 4.091 14 C -0.265 4.265 15 C 0.061 3.939 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.560 5.560 21 Si 0.840 3.160 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.195 1.195 25 C -0.211 4.211 26 C -0.057 4.057 27 C -0.032 4.032 28 O -0.303 6.303 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.163 0.837 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.383 -21.889 -8.215 27.449 hybrid contribution 0.259 1.353 0.817 1.602 sum -14.123 -20.536 -7.398 25.998 Atomic orbital electron populations 1.22941 0.79237 1.03922 1.00958 1.87873 1.21588 1.27839 1.95634 1.22501 0.90465 0.85443 1.02331 1.22313 0.93886 0.92623 0.88129 0.92094 1.22112 0.80503 0.97212 1.03971 1.48208 1.05840 1.55353 1.25839 1.21040 0.89478 0.77395 0.81377 1.90750 1.80129 1.42877 1.31572 1.20734 0.88650 1.04616 0.98743 1.19171 0.95912 0.91640 0.95978 1.20964 1.04037 1.00959 0.93873 1.21131 0.96059 0.92759 0.99194 1.21295 1.09211 0.96801 0.99208 1.19884 0.93802 0.85041 0.95153 1.83934 1.71331 1.19848 1.39007 1.21861 1.40155 0.92922 0.93980 0.88233 1.26622 0.97863 0.95525 1.02246 1.70194 1.47379 1.07858 1.30594 0.84510 0.77740 0.78189 0.75610 1.17523 1.19020 1.19451 1.20210 1.06011 0.95756 0.99110 1.22828 1.01961 0.93340 0.87524 1.23222 0.79923 0.95348 1.04745 1.88000 1.23807 1.81128 1.37343 0.93060 0.88524 0.93057 0.91279 0.90268 0.89627 0.89544 0.83693 0.85832 0.83550 0.83696 0.86475 0.91863 0.87566 0.85708 0.89209 0.92261 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.65 10.67 -144.45 -1.54 -9.20 16 3 C 0.07 1.10 5.60 71.98 0.40 1.51 16 4 C 0.09 1.61 3.06 30.69 0.09 1.71 16 5 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 6 C 0.09 1.71 5.93 86.35 0.51 2.22 16 7 N -0.62 -12.60 3.02 -817.34 -2.47 -15.07 16 8 C 0.52 14.32 7.70 87.66 0.68 15.00 16 9 O -0.57 -22.44 15.50 -3.05 -0.05 -22.49 16 10 C -0.09 -2.03 4.20 29.10 0.12 -1.91 16 11 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 12 C -0.18 -5.89 9.70 22.30 0.22 -5.68 16 13 C -0.07 -2.68 10.04 22.25 0.22 -2.46 16 14 C -0.25 -11.39 9.17 22.39 0.21 -11.19 16 15 C 0.11 5.88 6.65 22.58 0.15 6.03 16 16 O -0.23 -14.77 9.76 -22.79 -0.22 -14.99 16 17 C -0.41 -25.06 9.49 67.92 0.64 -24.42 16 18 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 19 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 20 N -0.92 -58.20 13.67 21.61 0.30 -57.90 16 21 Si 1.02 44.31 29.55 68.60 2.03 46.34 16 22 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.19 -8.66 9.64 22.39 0.22 -8.44 16 26 C 0.07 0.76 6.54 86.36 0.56 1.33 16 27 C 0.04 0.50 6.99 72.08 0.50 1.01 16 28 O -0.38 -6.90 10.35 -144.45 -1.49 -8.40 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.09 2.07 7.08 -2.39 -0.02 2.05 16 36 H 0.15 2.02 7.60 -2.39 -0.02 2.00 16 37 H 0.12 2.33 7.96 -2.39 -0.02 2.32 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 40 H 0.12 5.49 5.64 -2.91 -0.02 5.48 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.12 0.82 6.05 -2.39 -0.01 0.81 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -86.98 382.86 3.69 -83.29 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.99 Total: 24.21 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 6.16 Total: -25.80 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -2.17 Total: -72.97 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -3.31 Total: -55.07 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -86.98 3.69 -83.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.965 kcal (2) G-P(sol) polarization free energy of solvation -86.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds