Wall clock time and date at job start Tue Mar 31 2020 19:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00117 * 2 1 4 4 C 1.53000 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.51340 * 54.89519 * 4 3 2 6 6 C 1.53290 * 109.51254 * 175.00004 * 4 3 2 7 7 N 1.47152 * 108.38795 * 172.22273 * 6 4 3 8 8 C 1.34773 * 120.98325 * 129.48183 * 7 6 4 9 9 O 1.21282 * 120.00353 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00118 * 180.02562 * 8 7 6 11 11 C 1.50702 * 109.47187 * 180.02562 * 10 8 7 12 12 C 1.38320 * 119.96184 * 269.72021 * 11 10 8 13 13 C 1.38281 * 120.13471 * 179.76756 * 12 11 10 14 14 C 1.38125 * 120.06928 * 0.50796 * 13 12 11 15 15 C 1.38853 * 119.92760 * 359.75270 * 14 13 12 16 16 O 1.35762 * 120.06777 * 179.97438 * 15 14 13 17 17 C 1.34827 * 116.99452 * 354.48318 * 16 15 14 18 18 H 1.07996 * 120.00523 * 5.06446 * 17 16 15 19 19 C 1.38655 * 119.99754 * 185.05825 * 17 16 15 20 20 N 1.31555 * 120.00376 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99967 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47135 * 89.99793 * 21 19 17 23 23 H 1.48502 * 109.47677 * 209.99952 * 21 19 17 24 24 H 1.48501 * 109.47209 * 330.00139 * 21 19 17 25 25 C 1.38075 * 119.96532 * 89.99857 * 11 10 8 26 26 C 1.47158 * 118.03488 * 309.46683 * 7 6 4 27 27 C 1.53299 * 108.38457 * 50.53236 * 26 7 6 28 28 O 1.42961 * 109.51165 * 294.74391 * 4 3 2 29 29 H 1.08999 * 109.46990 * 59.99808 * 1 2 3 30 30 H 1.08994 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47147 * 300.00071 * 1 2 3 32 32 H 1.09001 * 109.47172 * 299.99582 * 3 2 1 33 33 H 1.08999 * 109.47164 * 59.99986 * 3 2 1 34 34 H 1.08998 * 109.68340 * 291.94570 * 6 4 3 35 35 H 1.09000 * 109.68507 * 52.49912 * 6 4 3 36 36 H 1.08999 * 109.46996 * 300.00170 * 10 8 7 37 37 H 1.08999 * 109.47178 * 60.00037 * 10 8 7 38 38 H 1.07998 * 119.93336 * 0.02562 * 12 11 10 39 39 H 1.08005 * 119.96840 * 180.25912 * 13 12 11 40 40 H 1.08003 * 120.03238 * 179.72145 * 14 13 12 41 41 H 0.97002 * 119.99983 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.03655 * 0.02562 * 25 11 10 43 43 H 1.09005 * 109.67867 * 170.25386 * 26 7 6 44 44 H 1.08996 * 109.67915 * 290.80669 * 26 7 6 45 45 H 1.09004 * 109.51268 * 67.62057 * 27 26 7 46 46 H 1.08994 * 109.51062 * 187.72145 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8514 0.5670 -0.8414 6 6 4.1595 2.5790 -0.1266 7 7 5.6136 2.4557 0.0632 8 6 6.4767 2.9966 -0.8192 9 8 6.0586 3.5963 -1.7869 10 6 7.9617 2.8565 -0.6035 11 6 8.6991 3.5451 -1.7228 12 6 9.0376 2.8400 -2.8637 13 6 9.7101 3.4696 -3.8950 14 6 10.0551 4.8024 -3.7843 15 6 9.7214 5.5115 -2.6381 16 8 10.0596 6.8216 -2.5260 17 6 10.8172 7.3444 -3.5112 18 1 11.0586 6.7502 -4.3800 19 6 11.2863 8.6452 -3.4088 20 7 12.0251 9.1557 -4.3701 21 14 10.8692 9.6729 -1.9056 22 1 11.9134 9.4784 -0.8677 23 1 10.8113 11.1070 -2.2868 24 1 9.5514 9.2503 -1.3672 25 6 9.0412 4.8777 -1.6061 26 6 6.0973 1.7245 1.2451 27 6 5.3788 0.3716 1.3042 28 8 3.9674 0.5843 1.2229 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 3.9517 2.9862 -1.1160 35 1 3.7443 3.2373 0.6365 36 1 8.2355 3.3141 0.3472 37 1 8.2284 1.7997 -0.5882 38 1 8.7725 1.7967 -2.9509 39 1 9.9694 2.9175 -4.7863 40 1 10.5843 5.2924 -4.5883 41 1 12.3536 10.0656 -4.2983 42 1 8.7810 5.4264 -0.7130 43 1 7.1726 1.5658 1.1639 44 1 5.8771 2.2968 2.1463 45 1 5.7021 -0.2492 0.4686 46 1 5.6191 -0.1275 2.2429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089833431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:53 Heat of formation + Delta-G solvation = -114.358349 kcal Electronic energy + Delta-G solvation = -28397.274747 eV Core-core repulsion = 24253.569312 eV Total energy + Delta-G solvation = -4143.705435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.67414 -39.32241 -38.66723 -37.81122 -36.61678 -34.94076 -33.04321 -32.38215 -31.96690 -29.46765 -28.97507 -28.06095 -26.77292 -25.39369 -24.98431 -23.69311 -22.00523 -21.67939 -20.77218 -19.32989 -17.70534 -17.46752 -17.35551 -17.07790 -16.90075 -16.16704 -15.76876 -15.68679 -15.53251 -15.18914 -15.05850 -14.73622 -14.47399 -14.08129 -13.80916 -13.57182 -13.50005 -13.42058 -12.88427 -12.72831 -12.47866 -12.43585 -12.19115 -12.07489 -11.97395 -11.71949 -11.49572 -11.29289 -11.05821 -10.83737 -10.79111 -10.70125 -10.47855 -10.14206 -10.10018 -9.83520 -9.36809 -8.84753 -8.83086 -8.13583 -7.34039 -6.38483 -4.05135 1.99267 2.29859 2.56760 2.65788 3.20097 3.23735 3.26774 3.38153 3.42661 4.26284 4.30116 4.35660 4.50789 4.56025 4.62026 4.69686 4.76029 4.79279 4.87441 4.92009 4.97279 5.02174 5.06619 5.08478 5.13860 5.24080 5.27943 5.28483 5.34647 5.41975 5.53721 5.56329 5.68867 5.84762 6.09786 6.14099 6.26831 6.53975 6.67221 6.76606 6.80049 7.10293 7.12779 7.22371 7.33667 7.62538 7.83461 8.07018 8.09768 8.97007 9.59974 10.69298 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.002184 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.354220 B =12816.855505 C =13123.833452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.071 3.929 4 C 0.081 3.919 5 H 0.073 0.927 6 C 0.086 3.914 7 N -0.624 5.624 8 C 0.519 3.481 9 O -0.514 6.514 10 C -0.092 4.092 11 C -0.037 4.037 12 C -0.188 4.188 13 C -0.076 4.076 14 C -0.217 4.217 15 C 0.160 3.840 16 O -0.219 6.219 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.174 4.174 26 C 0.071 3.929 27 C 0.048 3.952 28 O -0.368 6.368 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.279 0.721 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.259 -19.094 12.906 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.091 0.909 6 C -0.037 4.037 7 N -0.361 5.361 8 C 0.308 3.692 9 O -0.388 6.388 10 C -0.131 4.131 11 C -0.037 4.037 12 C -0.207 4.207 13 C -0.094 4.094 14 C -0.236 4.236 15 C 0.108 3.892 16 O -0.124 6.124 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.193 4.193 26 C -0.053 4.053 27 C -0.030 4.030 28 O -0.287 6.287 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.413 -18.581 12.587 28.406 hybrid contribution -0.048 0.811 0.283 0.860 sum -17.461 -17.771 12.870 28.041 Atomic orbital electron populations 1.22764 0.80788 1.02931 1.00062 1.87927 1.19777 1.27100 1.95431 1.22448 0.91148 0.85623 1.01425 1.22443 0.93173 0.93769 0.88410 0.90927 1.22085 0.80600 0.96382 1.04605 1.48154 1.05859 1.56657 1.25423 1.20831 0.88656 0.77975 0.81770 1.90760 1.79172 1.40088 1.28751 1.20615 0.90332 1.02423 0.99751 1.18644 0.97603 0.93101 0.94378 1.20409 1.06171 0.99105 0.95006 1.20740 0.96932 0.94207 0.97506 1.21300 1.07413 0.95124 0.99742 1.19008 0.93110 0.84051 0.92995 1.83571 1.62553 1.19458 1.46851 1.20761 1.28050 0.98672 0.98899 0.87648 1.24456 0.95156 0.96146 0.98280 1.69647 1.33386 1.16455 1.32415 0.86190 0.80171 0.78589 0.82005 1.19917 1.20807 1.18392 1.19931 1.06375 0.93896 0.99145 1.22498 1.00416 0.93620 0.88720 1.22996 0.81341 0.95433 1.03237 1.88013 1.22065 1.81435 1.37181 0.93972 0.89494 0.93940 0.91297 0.92043 0.87736 0.90585 0.88153 0.88252 0.87765 0.87139 0.84955 0.91115 0.86856 0.88266 0.90278 0.92420 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.68 10.67 -39.71 -0.42 -4.11 16 3 C 0.07 0.57 5.60 37.16 0.21 0.78 16 4 C 0.08 0.74 3.06 -26.58 -0.08 0.66 16 5 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 6 C 0.09 0.85 5.93 -3.54 -0.02 0.83 16 7 N -0.62 -6.62 3.02 -172.27 -0.52 -7.14 16 8 C 0.52 7.24 7.70 -10.99 -0.08 7.16 16 9 O -0.51 -9.60 15.50 5.56 0.09 -9.51 16 10 C -0.09 -1.13 4.20 -29.03 -0.12 -1.26 16 11 C -0.04 -0.64 4.37 -104.65 -0.46 -1.09 16 12 C -0.19 -3.27 9.70 -39.54 -0.38 -3.65 16 13 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 14 C -0.22 -4.85 9.17 -39.40 -0.36 -5.21 16 15 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 16 O -0.22 -5.95 8.59 0.02 0.00 -5.95 16 17 C -0.39 -11.17 9.95 30.89 0.31 -10.86 16 18 H 0.11 3.09 5.44 -52.49 -0.29 2.81 16 19 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 20 N -0.88 -25.78 13.96 55.48 0.77 -25.00 16 21 Si 0.90 22.05 28.62 -169.99 -4.86 17.18 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.17 -3.59 9.64 -39.40 -0.38 -3.97 16 26 C 0.07 0.50 6.54 -3.53 -0.02 0.48 16 27 C 0.05 0.33 6.99 37.31 0.26 0.59 16 28 O -0.37 -3.57 10.35 -39.71 -0.41 -3.98 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 1.16 7.08 -51.93 -0.37 0.79 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.03 7.96 -51.93 -0.41 0.62 16 37 H 0.10 0.92 7.60 -51.93 -0.39 0.53 16 38 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.13 3.09 5.64 -52.48 -0.30 2.79 16 41 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.11 2.19 8.06 -52.48 -0.42 1.77 16 43 H 0.10 0.52 6.05 -51.93 -0.31 0.21 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -35.25 381.74 -7.09 -42.34 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.70 Total: 1.20 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.78 Total: -10.80 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.25 Total: -32.15 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.75 Total: -23.54 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.25 -7.09 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.017 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds