Wall clock time and date at job start Tue Mar 31 2020 19:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00117 * 2 1 4 4 C 1.53000 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.51340 * 54.89519 * 4 3 2 6 6 C 1.53290 * 109.51254 * 175.00004 * 4 3 2 7 7 N 1.47152 * 108.38795 * 172.22273 * 6 4 3 8 8 C 1.34773 * 120.98325 * 129.48183 * 7 6 4 9 9 O 1.21282 * 120.00353 * 0.02562 * 8 7 6 10 10 C 1.50703 * 120.00118 * 180.02562 * 8 7 6 11 11 C 1.50702 * 109.47187 * 180.02562 * 10 8 7 12 12 C 1.38320 * 119.96184 * 269.72021 * 11 10 8 13 13 C 1.38281 * 120.13471 * 179.76756 * 12 11 10 14 14 C 1.38125 * 120.06928 * 0.50796 * 13 12 11 15 15 C 1.38853 * 119.92760 * 359.75270 * 14 13 12 16 16 O 1.35762 * 120.06777 * 179.97438 * 15 14 13 17 17 C 1.34827 * 116.99452 * 354.48318 * 16 15 14 18 18 H 1.07996 * 120.00523 * 5.06446 * 17 16 15 19 19 C 1.38655 * 119.99754 * 185.05825 * 17 16 15 20 20 N 1.31555 * 120.00376 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99967 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47135 * 89.99793 * 21 19 17 23 23 H 1.48502 * 109.47677 * 209.99952 * 21 19 17 24 24 H 1.48501 * 109.47209 * 330.00139 * 21 19 17 25 25 C 1.38075 * 119.96532 * 89.99857 * 11 10 8 26 26 C 1.47158 * 118.03488 * 309.46683 * 7 6 4 27 27 C 1.53299 * 108.38457 * 50.53236 * 26 7 6 28 28 O 1.42961 * 109.51165 * 294.74391 * 4 3 2 29 29 H 1.08999 * 109.46990 * 59.99808 * 1 2 3 30 30 H 1.08994 * 109.47561 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47147 * 300.00071 * 1 2 3 32 32 H 1.09001 * 109.47172 * 299.99582 * 3 2 1 33 33 H 1.08999 * 109.47164 * 59.99986 * 3 2 1 34 34 H 1.08998 * 109.68340 * 291.94570 * 6 4 3 35 35 H 1.09000 * 109.68507 * 52.49912 * 6 4 3 36 36 H 1.08999 * 109.46996 * 300.00170 * 10 8 7 37 37 H 1.08999 * 109.47178 * 60.00037 * 10 8 7 38 38 H 1.07998 * 119.93336 * 0.02562 * 12 11 10 39 39 H 1.08005 * 119.96840 * 180.25912 * 13 12 11 40 40 H 1.08003 * 120.03238 * 179.72145 * 14 13 12 41 41 H 0.97002 * 119.99983 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.03655 * 0.02562 * 25 11 10 43 43 H 1.09005 * 109.67867 * 170.25386 * 26 7 6 44 44 H 1.08996 * 109.67915 * 290.80669 * 26 7 6 45 45 H 1.09004 * 109.51268 * 67.62057 * 27 26 7 46 46 H 1.08994 * 109.51062 * 187.72145 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8514 0.5670 -0.8414 6 6 4.1595 2.5790 -0.1266 7 7 5.6136 2.4557 0.0632 8 6 6.4767 2.9966 -0.8192 9 8 6.0586 3.5963 -1.7869 10 6 7.9617 2.8565 -0.6035 11 6 8.6991 3.5451 -1.7228 12 6 9.0376 2.8400 -2.8637 13 6 9.7101 3.4696 -3.8950 14 6 10.0551 4.8024 -3.7843 15 6 9.7214 5.5115 -2.6381 16 8 10.0596 6.8216 -2.5260 17 6 10.8172 7.3444 -3.5112 18 1 11.0586 6.7502 -4.3800 19 6 11.2863 8.6452 -3.4088 20 7 12.0251 9.1557 -4.3701 21 14 10.8692 9.6729 -1.9056 22 1 11.9134 9.4784 -0.8677 23 1 10.8113 11.1070 -2.2868 24 1 9.5514 9.2503 -1.3672 25 6 9.0412 4.8777 -1.6061 26 6 6.0973 1.7245 1.2451 27 6 5.3788 0.3716 1.3042 28 8 3.9674 0.5843 1.2229 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 3.9517 2.9862 -1.1160 35 1 3.7443 3.2373 0.6365 36 1 8.2355 3.3141 0.3472 37 1 8.2284 1.7997 -0.5882 38 1 8.7725 1.7967 -2.9509 39 1 9.9694 2.9175 -4.7863 40 1 10.5843 5.2924 -4.5883 41 1 12.3536 10.0656 -4.2983 42 1 8.7810 5.4264 -0.7130 43 1 7.1726 1.5658 1.1639 44 1 5.8771 2.2968 2.1463 45 1 5.7021 -0.2492 0.4686 46 1 5.6191 -0.1275 2.2429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089833431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:52 Heat of formation + Delta-G solvation = -139.068575 kcal Electronic energy + Delta-G solvation = -28398.346263 eV Core-core repulsion = 24253.569312 eV Total energy + Delta-G solvation = -4144.776951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.59095 -40.82533 -39.72686 -38.53335 -38.20780 -35.81601 -34.49294 -33.89448 -33.10856 -31.10764 -29.66081 -29.12202 -27.61693 -27.15457 -25.96731 -24.33053 -23.40440 -22.84694 -22.11349 -20.34886 -19.62546 -18.84642 -18.37093 -17.95196 -17.58119 -17.01801 -16.87742 -16.72500 -16.44960 -16.27214 -16.15283 -15.82864 -15.72549 -15.60595 -15.14473 -15.01417 -14.59170 -14.41353 -14.27872 -14.10164 -13.97947 -13.42122 -13.19237 -13.05715 -12.90151 -12.71386 -12.56501 -12.47453 -12.44462 -12.33327 -12.05182 -11.94149 -11.74100 -11.32190 -11.22261 -10.95533 -10.87125 -10.67794 -9.68990 -9.63852 -9.07821 -8.50774 -6.23591 0.46280 0.68700 1.29113 1.33654 1.50409 1.56291 1.79028 2.27157 2.62013 2.74439 2.80180 3.03283 3.10402 3.60523 3.71497 3.81545 3.89399 3.98919 4.05693 4.07481 4.21320 4.28310 4.32821 4.35325 4.40144 4.46153 4.50812 4.54091 4.55696 4.59325 4.60928 4.68839 4.75375 4.83766 4.86826 4.93956 4.97463 5.22776 5.32965 5.38404 5.63252 5.70981 5.75696 5.90368 6.08850 6.18461 6.20765 6.29529 6.83382 7.10563 7.58052 8.60937 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.002184 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.354220 B =12816.855505 C =13123.833452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.069 3.931 4 C 0.089 3.911 5 H 0.060 0.940 6 C 0.086 3.914 7 N -0.618 5.618 8 C 0.517 3.483 9 O -0.575 6.575 10 C -0.088 4.088 11 C -0.029 4.029 12 C -0.171 4.171 13 C -0.078 4.078 14 C -0.240 4.240 15 C 0.118 3.882 16 O -0.247 6.247 17 C -0.400 4.400 18 H 0.080 0.920 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.972 3.028 22 H -0.261 1.261 23 H -0.266 1.266 24 H -0.267 1.267 25 C -0.180 4.180 26 C 0.066 3.934 27 C 0.043 3.957 28 O -0.384 6.384 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.285 0.715 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 -21.795 15.845 32.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.008 4.008 4 C 0.030 3.970 5 H 0.078 0.922 6 C -0.037 4.037 7 N -0.352 5.352 8 C 0.307 3.693 9 O -0.453 6.453 10 C -0.127 4.127 11 C -0.029 4.029 12 C -0.189 4.189 13 C -0.096 4.096 14 C -0.259 4.259 15 C 0.069 3.931 16 O -0.155 6.155 17 C -0.476 4.476 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.186 1.186 23 H -0.191 1.191 24 H -0.192 1.192 25 C -0.200 4.200 26 C -0.056 4.056 27 C -0.034 4.034 28 O -0.303 6.303 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.109 0.891 45 H 0.076 0.924 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.692 -21.355 15.572 32.372 hybrid contribution 0.192 1.272 -0.592 1.416 sum -18.501 -20.084 14.980 31.145 Atomic orbital electron populations 1.22937 0.79253 1.03899 1.00959 1.87875 1.21574 1.27904 1.95634 1.22507 0.90514 0.85418 1.02330 1.22319 0.93864 0.92812 0.88037 0.92204 1.22102 0.80538 0.97093 1.04003 1.48209 1.05820 1.55601 1.25586 1.21047 0.89486 0.77393 0.81369 1.90754 1.80133 1.43028 1.31399 1.20743 0.88520 1.04707 0.98747 1.19195 0.95990 0.91832 0.95906 1.21004 1.03179 1.00985 0.93722 1.21115 0.96380 0.92744 0.99343 1.21324 1.08565 0.96955 0.99050 1.19604 0.94986 0.83573 0.94913 1.83509 1.64008 1.21407 1.46536 1.20705 1.28846 0.99080 0.98965 0.90282 1.25292 0.95142 0.97161 1.01359 1.69730 1.35072 1.17248 1.34335 0.85209 0.79572 0.77418 0.78435 1.18610 1.19104 1.19177 1.20268 1.05708 0.95421 0.98560 1.22825 1.01953 0.93324 0.87476 1.23225 0.79944 0.95499 1.04693 1.88003 1.23828 1.81409 1.37082 0.93057 0.88585 0.93044 0.90280 0.91243 0.89516 0.89515 0.85296 0.83804 0.83457 0.84189 0.87502 0.90566 0.86011 0.85601 0.89077 0.92377 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.33 10.67 -144.69 -1.54 -8.88 16 3 C 0.07 1.02 5.60 71.98 0.40 1.42 16 4 C 0.09 1.48 3.06 30.69 0.09 1.58 16 5 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 6 C 0.09 1.55 5.93 86.35 0.51 2.07 16 7 N -0.62 -11.18 3.02 -817.34 -2.47 -13.65 16 8 C 0.52 12.89 7.70 87.66 0.68 13.57 16 9 O -0.57 -20.82 15.50 -3.04 -0.05 -20.86 16 10 C -0.09 -1.76 4.20 29.10 0.12 -1.64 16 11 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 12 C -0.17 -5.33 9.70 22.30 0.22 -5.11 16 13 C -0.08 -2.85 10.04 22.25 0.22 -2.62 16 14 C -0.24 -11.18 9.17 22.39 0.21 -10.98 16 15 C 0.12 5.86 6.65 22.58 0.15 6.01 16 16 O -0.25 -14.06 8.59 -22.83 -0.20 -14.26 16 17 C -0.40 -24.45 9.95 67.92 0.68 -23.77 16 18 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 19 C 0.01 0.51 5.49 84.83 0.47 0.98 16 20 N -0.92 -56.36 13.96 21.61 0.30 -56.06 16 21 Si 0.97 46.71 28.62 68.60 1.96 48.67 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 25 C -0.18 -7.32 9.64 22.39 0.22 -7.10 16 26 C 0.07 0.63 6.54 86.35 0.56 1.20 16 27 C 0.04 0.43 6.99 72.08 0.50 0.93 16 28 O -0.38 -6.42 10.35 -144.69 -1.50 -7.92 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.91 7.08 -2.39 -0.02 1.89 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.13 1.93 7.96 -2.39 -0.02 1.91 16 37 H 0.14 1.66 7.60 -2.39 -0.02 1.64 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 40 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 41 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 43 H 0.13 0.55 6.05 -2.38 -0.01 0.53 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -82.70 381.74 3.69 -79.02 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.98 Total: 16.88 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 6.19 Total: -22.94 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -2.17 Total: -69.71 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -3.29 Total: -51.92 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.96 Total: 48.67 kcal Total: -82.70 3.69 -79.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089833431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.054 kcal (2) G-P(sol) polarization free energy of solvation -82.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds