Wall clock time and date at job start Tue Mar 31 2020 18:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35890 * 117.00368 * 2 1 4 4 C 1.38801 * 120.02761 * 0.02562 * 3 2 1 5 5 C 1.38148 * 120.05444 * 179.97438 * 4 3 2 6 6 C 1.38200 * 120.11281 * 359.75029 * 5 4 3 7 7 C 1.38756 * 120.04869 * 0.50548 * 6 5 4 8 8 O 1.35898 * 120.02187 * 179.77282 * 7 6 5 9 9 C 1.42902 * 117.00080 * 359.72037 * 8 7 6 10 10 C 1.50703 * 109.47093 * 180.02562 * 9 8 7 11 11 O 1.20833 * 119.99963 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00351 * 180.27733 * 10 9 8 13 13 C 1.45200 * 117.00498 * 179.72099 * 12 10 9 14 14 C 1.53036 * 109.46116 * 270.02811 * 13 12 10 15 15 C 1.53201 * 109.31072 * 178.59679 * 14 13 12 16 16 N 1.46926 * 108.76259 * 54.65521 * 15 14 13 17 17 C 1.36940 * 120.62809 * 126.40357 * 16 15 14 18 18 H 1.08004 * 119.99801 * 331.82712 * 17 16 15 19 19 C 1.38810 * 119.99695 * 151.82578 * 17 16 15 20 20 N 1.31619 * 120.00321 * 343.06955 * 19 17 16 21 21 Si 1.86803 * 119.99586 * 163.07520 * 19 17 16 22 22 H 1.48501 * 109.47357 * 89.99955 * 21 19 17 23 23 H 1.48507 * 109.46960 * 209.99564 * 21 19 17 24 24 H 1.48497 * 109.47606 * 329.99896 * 21 19 17 25 25 C 1.46922 * 118.74135 * 306.38513 * 16 15 14 26 26 C 1.53044 * 109.45982 * 149.97126 * 13 12 10 27 27 C 1.38614 * 120.03075 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46779 * 299.99771 * 1 2 3 29 29 H 1.08998 * 109.47053 * 59.99745 * 1 2 3 30 30 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.96920 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.94208 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.97586 * 180.25761 * 6 5 4 34 34 H 1.08999 * 109.47342 * 60.00446 * 9 8 7 35 35 H 1.08996 * 109.46989 * 300.00220 * 9 8 7 36 36 H 1.09001 * 109.45559 * 30.00262 * 13 12 10 37 37 H 1.08996 * 109.49853 * 298.56384 * 14 13 12 38 38 H 1.09001 * 109.49850 * 58.66372 * 14 13 12 39 39 H 1.08994 * 109.59687 * 294.86903 * 15 14 13 40 40 H 1.08998 * 109.70124 * 174.50434 * 15 14 13 41 41 H 0.96998 * 120.00234 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58617 * 293.82095 * 25 16 15 43 43 H 1.09002 * 109.70531 * 173.46933 * 25 16 15 44 44 H 1.09004 * 109.49363 * 301.33403 * 26 13 12 45 45 H 1.08996 * 109.49623 * 61.40357 * 26 13 12 46 46 H 1.07995 * 120.05204 * 0.04721 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2907 2.3752 0.0005 5 6 1.9174 3.6064 0.0011 6 6 3.2973 3.6820 0.0063 7 6 4.0568 2.5208 0.0004 8 8 5.4137 2.5958 0.0009 9 6 5.9912 3.9029 0.0014 10 6 7.4938 3.7882 0.0012 11 8 8.0166 2.6988 0.0012 12 8 8.2516 4.8961 0.0072 13 6 9.6916 4.7099 0.0130 14 6 10.1909 4.6403 1.4579 15 6 11.7053 4.4088 1.4599 16 7 12.3444 5.4554 0.6506 17 6 13.3571 6.2175 1.1693 18 1 13.4048 6.4008 2.2326 19 6 14.3222 6.7544 0.3283 20 7 14.4717 6.2791 -0.8899 21 14 15.4088 8.1515 0.9258 22 1 16.6292 7.5926 1.5611 23 1 15.7968 9.0043 -0.2264 24 1 14.6643 8.9683 1.9177 25 6 11.8768 5.6684 -0.7258 26 6 10.3605 5.8854 -0.7034 27 6 3.4302 1.2839 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2122 2.3187 0.0005 32 1 1.3278 4.5114 0.0011 33 1 3.7849 4.6456 0.0109 34 1 5.6678 4.4427 0.8914 35 1 5.6683 4.4431 -0.8886 36 1 9.9397 3.7820 -0.5022 37 1 9.9652 5.5775 1.9664 38 1 9.6967 3.8174 1.9743 39 1 11.9262 3.4307 1.0328 40 1 12.0828 4.4553 2.4814 41 1 15.1464 6.6541 -1.4774 42 1 12.1117 4.7929 -1.3312 43 1 12.3654 6.5465 -1.1482 44 1 9.9869 5.9487 -1.7254 45 1 10.1326 6.8109 -0.1746 46 1 4.0196 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120805037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:11 Heat of formation + Delta-G solvation = -106.735674 kcal Electronic energy + Delta-G solvation = -27917.256933 eV Core-core repulsion = 23773.882042 eV Total energy + Delta-G solvation = -4143.374891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97702 -40.37945 -39.33184 -37.53520 -36.70935 -35.83478 -32.77178 -31.56069 -30.51218 -30.07566 -29.70061 -28.83293 -27.55570 -25.18973 -23.27984 -22.81666 -22.27587 -21.91661 -20.65704 -19.37991 -19.20580 -17.70970 -17.22797 -16.90476 -16.85284 -16.51571 -16.38102 -16.14745 -15.76225 -15.24499 -14.91659 -14.66004 -14.01720 -13.92457 -13.62018 -13.47416 -13.23665 -13.16078 -12.90659 -12.72836 -12.55943 -12.50728 -12.06313 -11.89874 -11.56656 -11.28843 -11.23830 -11.15296 -11.10885 -10.79609 -10.73480 -10.50250 -10.29289 -10.22604 -9.92476 -9.69864 -9.50090 -8.88985 -8.53578 -8.52048 -6.75589 -5.84401 -3.27024 0.98964 1.02011 1.94699 2.18762 2.81160 3.35549 3.36059 3.42756 3.45139 3.50248 4.31873 4.45919 4.47028 4.63447 4.65543 4.66506 4.69116 4.70632 4.77503 4.85133 5.03421 5.14006 5.21001 5.32340 5.36994 5.48803 5.53973 5.68087 5.79477 5.83148 5.95202 6.03226 6.08501 6.18765 6.25912 6.37698 6.45765 6.53659 6.69517 6.77498 6.86398 6.91501 7.01314 7.24533 7.54522 7.75353 7.82727 8.39086 9.15046 9.77747 10.34292 11.24920 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.043424 B = 0.001722 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.642832 B =16259.479594 C =16465.298779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.165 3.835 4 C -0.245 4.245 5 C -0.039 4.039 6 C -0.246 4.246 7 C 0.171 3.829 8 O -0.290 6.290 9 C 0.068 3.932 10 C 0.459 3.541 11 O -0.486 6.486 12 O -0.353 6.353 13 C 0.100 3.900 14 C -0.147 4.147 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.067 0.933 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.135 4.135 27 C -0.183 4.183 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.062 0.938 41 H 0.255 0.745 42 H 0.023 0.977 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.254 -5.824 0.510 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.119 3.881 4 C -0.264 4.264 5 C -0.057 4.057 6 C -0.265 4.265 7 C 0.126 3.874 8 O -0.202 6.202 9 C -0.008 4.008 10 C 0.300 3.700 11 O -0.372 6.372 12 O -0.270 6.270 13 C 0.046 3.954 14 C -0.186 4.186 15 C 0.022 3.978 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.048 3.952 26 C -0.174 4.174 27 C -0.202 4.202 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -28.667 -6.440 0.391 29.384 hybrid contribution 0.278 0.959 0.220 1.023 sum -28.389 -5.481 0.611 28.919 Atomic orbital electron populations 1.23097 0.77976 1.04134 1.01524 1.86076 1.21647 1.26680 1.88312 1.18545 0.91245 0.84313 0.93951 1.21158 1.00162 0.92207 1.12878 1.20707 0.93641 0.97205 0.94184 1.21232 0.95053 0.97558 1.12609 1.18522 0.81556 0.93488 0.93866 1.86093 1.17412 1.28439 1.88286 1.21960 0.88816 0.84580 1.05443 1.22707 0.89691 0.83600 0.74052 1.90714 1.74504 1.28412 1.43553 1.86505 1.22574 1.34779 1.83176 1.23058 0.72662 1.01201 0.98432 1.22485 0.99770 1.01707 0.94680 1.20867 0.88826 0.91829 0.96304 1.44117 1.39103 1.37170 1.11080 1.19183 1.01890 1.24411 0.92995 0.91515 1.25067 0.97005 1.00497 0.96961 1.70013 1.35172 1.41528 1.08006 0.86280 0.80444 0.82195 0.77746 1.21333 1.21507 1.20430 1.20819 0.86478 1.01610 0.86337 1.22489 0.99660 0.96567 0.98732 1.19424 0.91487 0.96971 1.12351 0.92452 0.92459 0.88062 0.85275 0.85223 0.84886 0.87527 0.87556 0.90072 0.91239 0.92558 0.95961 0.91979 0.93488 0.95908 0.88463 0.92278 0.91341 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.83 10.49 -19.39 -0.20 -3.03 16 3 C 0.17 1.59 6.68 -39.23 -0.26 1.33 16 4 C -0.25 -1.89 9.04 -39.41 -0.36 -2.25 16 5 C -0.04 -0.29 10.03 -39.63 -0.40 -0.69 16 6 C -0.25 -2.09 9.04 -39.40 -0.36 -2.45 16 7 C 0.17 1.87 6.68 -39.24 -0.26 1.61 16 8 O -0.29 -3.67 9.67 -39.37 -0.38 -4.05 16 9 C 0.07 0.72 5.33 36.01 0.19 0.91 16 10 C 0.46 6.88 8.01 36.01 0.29 7.17 16 11 O -0.49 -9.05 15.72 -25.48 -0.40 -9.45 16 12 O -0.35 -5.60 9.88 -39.24 -0.39 -5.98 16 13 C 0.10 1.82 2.42 -26.69 -0.06 1.76 16 14 C -0.15 -2.71 5.72 -26.61 -0.15 -2.86 16 15 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 16 N -0.59 -14.75 2.99 -172.32 -0.52 -15.26 16 17 C -0.26 -6.92 9.58 -15.06 -0.14 -7.07 16 18 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -25.82 11.19 55.49 0.62 -25.20 16 21 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 26 C -0.14 -2.58 5.74 -26.61 -0.15 -2.73 16 27 C -0.18 -2.02 9.93 -39.29 -0.39 -2.41 16 28 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.13 0.68 6.29 -52.49 -0.33 0.35 16 32 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 34 H 0.11 0.84 7.65 -51.93 -0.40 0.44 16 35 H 0.11 0.83 7.67 -51.93 -0.40 0.43 16 36 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 2.52 6.07 -51.93 -0.31 2.20 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -32.72 379.27 -8.48 -41.20 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.70 Total: -0.91 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.20 Total: 0.65 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.11 Total: -40.46 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.37 Total: -22.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.72 -8.48 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120805037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.537 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds