Wall clock time and date at job start Tue Mar 31 2020 18:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35890 * 117.00368 * 2 1 4 4 C 1.38801 * 120.02761 * 0.02562 * 3 2 1 5 5 C 1.38148 * 120.05444 * 179.97438 * 4 3 2 6 6 C 1.38200 * 120.11281 * 359.75029 * 5 4 3 7 7 C 1.38756 * 120.04869 * 0.50548 * 6 5 4 8 8 O 1.35898 * 120.02187 * 179.77282 * 7 6 5 9 9 C 1.42902 * 117.00080 * 359.72037 * 8 7 6 10 10 C 1.50703 * 109.47093 * 180.02562 * 9 8 7 11 11 O 1.20833 * 119.99963 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00351 * 180.27733 * 10 9 8 13 13 C 1.45200 * 117.00498 * 179.72099 * 12 10 9 14 14 C 1.53036 * 109.46116 * 270.02811 * 13 12 10 15 15 C 1.53201 * 109.31072 * 178.59679 * 14 13 12 16 16 N 1.46926 * 108.76259 * 54.65521 * 15 14 13 17 17 C 1.36940 * 120.62809 * 126.40357 * 16 15 14 18 18 H 1.08004 * 119.99801 * 331.82712 * 17 16 15 19 19 C 1.38810 * 119.99695 * 151.82578 * 17 16 15 20 20 N 1.31619 * 120.00321 * 343.06955 * 19 17 16 21 21 Si 1.86803 * 119.99586 * 163.07520 * 19 17 16 22 22 H 1.48501 * 109.47357 * 89.99955 * 21 19 17 23 23 H 1.48507 * 109.46960 * 209.99564 * 21 19 17 24 24 H 1.48497 * 109.47606 * 329.99896 * 21 19 17 25 25 C 1.46922 * 118.74135 * 306.38513 * 16 15 14 26 26 C 1.53044 * 109.45982 * 149.97126 * 13 12 10 27 27 C 1.38614 * 120.03075 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46779 * 299.99771 * 1 2 3 29 29 H 1.08998 * 109.47053 * 59.99745 * 1 2 3 30 30 H 1.08996 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.96920 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.94208 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.97586 * 180.25761 * 6 5 4 34 34 H 1.08999 * 109.47342 * 60.00446 * 9 8 7 35 35 H 1.08996 * 109.46989 * 300.00220 * 9 8 7 36 36 H 1.09001 * 109.45559 * 30.00262 * 13 12 10 37 37 H 1.08996 * 109.49853 * 298.56384 * 14 13 12 38 38 H 1.09001 * 109.49850 * 58.66372 * 14 13 12 39 39 H 1.08994 * 109.59687 * 294.86903 * 15 14 13 40 40 H 1.08998 * 109.70124 * 174.50434 * 15 14 13 41 41 H 0.96998 * 120.00234 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58617 * 293.82095 * 25 16 15 43 43 H 1.09002 * 109.70531 * 173.46933 * 25 16 15 44 44 H 1.09004 * 109.49363 * 301.33403 * 26 13 12 45 45 H 1.08996 * 109.49623 * 61.40357 * 26 13 12 46 46 H 1.07995 * 120.05204 * 0.04721 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2907 2.3752 0.0005 5 6 1.9174 3.6064 0.0011 6 6 3.2973 3.6820 0.0063 7 6 4.0568 2.5208 0.0004 8 8 5.4137 2.5958 0.0009 9 6 5.9912 3.9029 0.0014 10 6 7.4938 3.7882 0.0012 11 8 8.0166 2.6988 0.0012 12 8 8.2516 4.8961 0.0072 13 6 9.6916 4.7099 0.0130 14 6 10.1909 4.6403 1.4579 15 6 11.7053 4.4088 1.4599 16 7 12.3444 5.4554 0.6506 17 6 13.3571 6.2175 1.1693 18 1 13.4048 6.4008 2.2326 19 6 14.3222 6.7544 0.3283 20 7 14.4717 6.2791 -0.8899 21 14 15.4088 8.1515 0.9258 22 1 16.6292 7.5926 1.5611 23 1 15.7968 9.0043 -0.2264 24 1 14.6643 8.9683 1.9177 25 6 11.8768 5.6684 -0.7258 26 6 10.3605 5.8854 -0.7034 27 6 3.4302 1.2839 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2122 2.3187 0.0005 32 1 1.3278 4.5114 0.0011 33 1 3.7849 4.6456 0.0109 34 1 5.6678 4.4427 0.8914 35 1 5.6683 4.4431 -0.8886 36 1 9.9397 3.7820 -0.5022 37 1 9.9652 5.5775 1.9664 38 1 9.6967 3.8174 1.9743 39 1 11.9262 3.4307 1.0328 40 1 12.0828 4.4553 2.4814 41 1 15.1464 6.6541 -1.4774 42 1 12.1117 4.7929 -1.3312 43 1 12.3654 6.5465 -1.1482 44 1 9.9869 5.9487 -1.7254 45 1 10.1326 6.8109 -0.1746 46 1 4.0196 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120805037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:10 Heat of formation + Delta-G solvation = -125.294661 kcal Electronic energy + Delta-G solvation = -27918.061711 eV Core-core repulsion = 23773.882042 eV Total energy + Delta-G solvation = -4144.179669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.94991 -41.32143 -40.11771 -39.06173 -37.56061 -37.17395 -34.63013 -32.38178 -32.07676 -31.52304 -30.70317 -29.71479 -28.04555 -27.03477 -24.41026 -23.93846 -23.76421 -22.95954 -21.82552 -21.06122 -19.90895 -18.95055 -18.77342 -17.96854 -17.82744 -17.38886 -17.12310 -16.87979 -16.71549 -16.56014 -16.26317 -15.81769 -15.42791 -15.33220 -14.93198 -14.62149 -14.57663 -14.38424 -14.22478 -13.80029 -13.60771 -13.29769 -13.08757 -13.07140 -12.75870 -12.64021 -12.60849 -12.49517 -12.47338 -12.16800 -11.99905 -11.90718 -11.82875 -11.72399 -11.56512 -11.39828 -11.10326 -10.56681 -9.58376 -9.16099 -8.76448 -7.90848 -5.36914 0.34333 0.38178 0.96181 1.01677 1.48749 1.50152 1.60222 2.10805 2.50854 2.72339 2.72462 3.25272 3.37483 3.58898 3.76047 3.79088 3.81523 3.92501 4.00784 4.10797 4.12715 4.13457 4.18519 4.34844 4.39431 4.42094 4.54554 4.54946 4.72032 4.73223 4.77941 4.83600 4.86117 4.93912 5.02824 5.19885 5.20277 5.25439 5.36414 5.43164 5.43849 5.49616 5.61951 5.67256 6.19061 6.35767 6.41525 6.60437 7.10737 7.78878 8.32009 9.16995 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.043424 B = 0.001722 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.642832 B =16259.479594 C =16465.298779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.155 3.845 4 C -0.242 4.242 5 C -0.036 4.036 6 C -0.245 4.245 7 C 0.153 3.847 8 O -0.321 6.321 9 C 0.074 3.926 10 C 0.458 3.542 11 O -0.529 6.529 12 O -0.342 6.342 13 C 0.106 3.894 14 C -0.133 4.133 15 C 0.145 3.855 16 N -0.609 5.609 17 C -0.267 4.267 18 H 0.070 0.930 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.268 1.268 25 C 0.179 3.821 26 C -0.120 4.120 27 C -0.214 4.214 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.067 0.933 41 H 0.252 0.748 42 H -0.001 1.001 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.363 -3.916 1.260 32.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.109 3.891 4 C -0.261 4.261 5 C -0.054 4.054 6 C -0.263 4.263 7 C 0.108 3.892 8 O -0.235 6.235 9 C -0.001 4.001 10 C 0.301 3.699 11 O -0.417 6.417 12 O -0.259 6.259 13 C 0.052 3.948 14 C -0.173 4.173 15 C 0.019 3.981 16 N -0.333 5.333 17 C -0.397 4.397 18 H 0.088 0.912 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.193 1.193 25 C 0.053 3.947 26 C -0.159 4.159 27 C -0.233 4.233 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.173 0.827 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -31.824 -4.536 1.158 32.166 hybrid contribution 1.126 0.245 -0.010 1.153 sum -30.698 -4.291 1.148 31.017 Atomic orbital electron populations 1.23400 0.75815 1.05672 1.02704 1.86046 1.23979 1.26899 1.88304 1.18691 0.90928 0.85333 0.94173 1.21510 1.01456 0.91626 1.11481 1.21162 0.93482 0.98266 0.92458 1.21540 0.95611 0.97534 1.11658 1.18668 0.80910 0.94294 0.95282 1.86028 1.18726 1.29783 1.88975 1.22177 0.84920 0.84435 1.08589 1.23688 0.91474 0.82502 0.72241 1.90708 1.75538 1.29881 1.45615 1.86491 1.20972 1.35171 1.83285 1.22701 0.74403 0.99867 0.97872 1.22285 0.97376 1.02486 0.95115 1.20960 0.90735 0.90455 0.95905 1.44369 1.39230 1.38010 1.11675 1.19528 1.02352 1.24527 0.93327 0.91224 1.25838 0.98555 1.02753 0.97187 1.70169 1.35967 1.42809 1.09149 0.85239 0.78554 0.79210 0.77174 1.21280 1.21733 1.19323 1.20607 0.89348 0.99273 0.85476 1.22190 0.96406 0.96987 1.00348 1.19529 0.92521 0.96846 1.14453 0.91191 0.91205 0.86559 0.82668 0.81817 0.82353 0.84130 0.84169 0.91800 0.90516 0.91321 0.97054 0.91465 0.93891 0.98285 0.91146 0.90167 0.90839 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.00 10.49 -92.31 -0.97 -6.97 16 3 C 0.15 2.88 6.68 22.49 0.15 3.03 16 4 C -0.24 -3.09 9.04 22.38 0.20 -2.88 16 5 C -0.04 -0.39 10.03 22.24 0.22 -0.17 16 6 C -0.24 -3.40 9.04 22.38 0.20 -3.20 16 7 C 0.15 3.21 6.68 22.49 0.15 3.36 16 8 O -0.32 -7.93 9.67 -73.32 -0.71 -8.64 16 9 C 0.07 1.35 5.33 71.24 0.38 1.73 16 10 C 0.46 13.07 8.01 71.24 0.57 13.64 16 11 O -0.53 -19.81 15.72 28.37 0.45 -19.36 16 12 O -0.34 -10.15 9.88 -51.34 -0.51 -10.65 16 13 C 0.11 3.78 2.42 30.62 0.07 3.85 16 14 C -0.13 -4.80 5.72 30.67 0.18 -4.62 16 15 C 0.15 6.24 6.52 86.37 0.56 6.81 16 16 N -0.61 -30.77 2.99 -699.09 -2.09 -32.87 16 17 C -0.27 -14.61 9.58 84.03 0.81 -13.80 16 18 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 19 C -0.05 -2.64 4.92 84.86 0.42 -2.22 16 20 N -0.94 -54.80 11.19 21.65 0.24 -54.56 16 21 Si 0.97 44.18 29.59 68.60 2.03 46.21 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.18 8.60 5.30 86.36 0.46 9.06 16 26 C -0.12 -4.50 5.74 30.67 0.18 -4.32 16 27 C -0.21 -4.87 9.93 22.46 0.22 -4.65 16 28 H 0.07 0.35 7.66 -2.38 -0.02 0.33 16 29 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.16 1.07 6.29 -2.91 -0.02 1.05 16 32 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 33 H 0.16 1.28 6.29 -2.91 -0.02 1.26 16 34 H 0.14 1.64 7.65 -2.39 -0.02 1.62 16 35 H 0.14 1.63 7.67 -2.39 -0.02 1.62 16 36 H 0.06 2.53 7.16 -2.39 -0.02 2.51 16 37 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 44 H 0.08 2.64 8.14 -2.38 -0.02 2.63 16 45 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -73.82 379.27 5.31 -68.51 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.98 Total: 11.45 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.88 Total: 6.87 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -1.85 Total: -87.42 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.74 Total: -45.62 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.82 5.31 -68.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120805037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.785 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds