Wall clock time and date at job start Tue Mar 31 2020 18:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35988 * 116.99758 * 2 1 4 4 C 1.38561 * 120.07555 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99864 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.14691 * 359.97438 * 5 4 3 7 7 C 1.38237 * 120.14677 * 0.02562 * 6 5 4 8 8 C 1.38572 * 120.00114 * 359.71554 * 7 6 5 9 9 O 1.35986 * 120.07666 * 180.27733 * 8 7 6 10 10 C 1.42906 * 116.99993 * 0.27646 * 9 8 7 11 11 C 1.50703 * 109.47203 * 180.02562 * 10 9 8 12 12 O 1.20832 * 119.99693 * 0.02562 * 11 10 9 13 13 O 1.34217 * 120.00160 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00339 * 180.02562 * 13 11 10 15 15 C 1.53035 * 109.46183 * 270.02231 * 14 13 11 16 16 C 1.53192 * 109.31564 * 178.59347 * 15 14 13 17 17 N 1.46932 * 108.75750 * 54.65906 * 16 15 14 18 18 C 1.36937 * 120.62885 * 126.40602 * 17 16 15 19 19 H 1.08004 * 119.99976 * 332.60713 * 18 17 16 20 20 C 1.38810 * 120.00380 * 152.60328 * 18 17 16 21 21 N 1.31615 * 120.00370 * 159.33947 * 20 18 17 22 22 Si 1.86797 * 119.99784 * 339.34998 * 20 18 17 23 23 H 1.48495 * 109.47430 * 92.93763 * 22 20 18 24 24 H 1.48504 * 109.46873 * 212.94153 * 22 20 18 25 25 H 1.48499 * 109.46976 * 332.93751 * 22 20 18 26 26 C 1.46926 * 118.74099 * 306.38136 * 17 16 15 27 27 C 1.53043 * 109.46114 * 149.96930 * 14 13 11 28 28 H 1.09000 * 109.46650 * 299.99596 * 1 2 3 29 29 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47435 * 60.00236 * 1 2 3 31 31 H 1.07997 * 120.00136 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.92680 * 179.97438 * 5 4 3 33 33 H 1.08006 * 119.92461 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.00430 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.47219 * 300.00259 * 10 9 8 36 36 H 1.08997 * 109.46632 * 60.00509 * 10 9 8 37 37 H 1.09002 * 109.45866 * 29.99814 * 14 13 11 38 38 H 1.08993 * 109.50140 * 298.56926 * 15 14 13 39 39 H 1.09003 * 109.49373 * 58.66178 * 15 14 13 40 40 H 1.08989 * 109.60203 * 294.87358 * 16 15 14 41 41 H 1.08996 * 109.70110 * 174.50564 * 16 15 14 42 42 H 0.97000 * 120.00190 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.58299 * 293.82170 * 26 17 16 44 44 H 1.09002 * 109.70217 * 173.46633 * 26 17 16 45 45 H 1.09002 * 109.49675 * 301.33473 * 27 14 13 46 46 H 1.08992 * 109.49612 * 61.40412 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3030 3.6798 -0.0005 7 6 4.0603 2.5233 0.0000 8 6 3.4360 1.2862 0.0060 9 8 4.1795 0.1476 0.0122 10 6 5.6003 0.3006 0.0184 11 6 6.2519 -1.0583 0.0241 12 8 5.5695 -2.0554 0.0225 13 8 7.5901 -1.1609 0.0309 14 6 8.1485 -2.5012 0.0355 15 6 8.3369 -2.9701 1.4801 16 6 8.8932 -4.3974 1.4810 17 7 10.1196 -4.4271 0.6724 18 6 11.2855 -4.9239 1.1913 19 1 11.4619 -4.8862 2.2561 20 6 12.2405 -5.4760 0.3487 21 7 13.4903 -5.5785 0.7482 22 14 11.7518 -6.0731 -1.3525 23 1 11.9617 -4.9832 -2.3390 24 1 12.5854 -7.2446 -1.7242 25 1 10.3199 -6.4665 -1.3466 26 6 10.0713 -3.9142 -0.7035 27 6 9.5014 -2.4924 -0.6799 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 0.2146 2.3196 -0.0014 32 1 1.3343 4.5114 -0.0019 33 1 3.7909 4.6434 -0.0014 34 1 5.1386 2.5839 0.0008 35 1 5.9107 0.8482 -0.8715 36 1 5.9024 0.8525 0.9084 37 1 7.4691 -3.1794 -0.4808 38 1 9.0356 -2.3067 1.9898 39 1 7.3768 -2.9537 1.9959 40 1 8.1567 -5.0772 1.0528 41 1 9.1214 -4.7022 2.5023 42 1 14.1578 -5.9640 0.1593 43 1 9.4308 -4.5546 -1.3099 44 1 11.0763 -3.8980 -1.1252 45 1 9.3703 -2.1361 -1.7016 46 1 10.1888 -1.8331 -0.1500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120823909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:15 Heat of formation + Delta-G solvation = -97.632669 kcal Electronic energy + Delta-G solvation = -28433.912922 eV Core-core repulsion = 24290.932767 eV Total energy + Delta-G solvation = -4142.980155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05380 -40.42536 -38.85260 -37.74502 -37.12883 -35.99723 -32.76320 -31.05998 -30.73763 -30.60694 -30.40069 -28.71828 -27.55955 -25.19157 -23.25736 -22.81751 -22.68419 -21.96064 -20.78002 -19.66192 -19.19050 -17.81738 -17.47923 -17.08478 -16.93539 -16.75534 -16.05936 -15.98917 -15.28592 -15.20242 -15.11191 -14.99402 -14.29835 -14.20874 -13.86908 -13.56120 -13.36639 -13.10203 -12.89930 -12.80314 -12.53274 -12.43596 -12.08408 -11.89144 -11.72849 -11.56865 -11.52618 -11.45949 -11.32834 -10.89454 -10.81765 -10.54549 -10.41447 -10.14937 -9.89601 -9.78054 -9.44612 -9.17593 -8.68130 -8.21289 -7.05769 -5.98075 -3.34896 0.86114 1.03865 1.99077 2.14017 2.92513 3.28983 3.30491 3.32429 3.47130 3.49894 4.34757 4.41451 4.49608 4.53325 4.63829 4.67328 4.68101 4.78445 4.80966 4.88431 4.95414 5.01508 5.08945 5.16144 5.16555 5.22723 5.34983 5.50398 5.73225 5.74497 5.85132 5.95105 6.02612 6.07973 6.09861 6.20076 6.24590 6.29883 6.50933 6.55524 6.59341 6.63167 6.63763 6.89216 7.18317 7.76390 7.90849 8.29261 8.88662 9.67470 10.03738 11.17610 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.002063 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.951430 B =13572.216381 C =13953.377628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.104 3.896 4 C -0.174 4.174 5 C -0.117 4.117 6 C -0.116 4.116 7 C -0.174 4.174 8 C 0.101 3.899 9 O -0.283 6.283 10 C 0.067 3.933 11 C 0.460 3.540 12 O -0.483 6.483 13 O -0.352 6.352 14 C 0.100 3.900 15 C -0.149 4.149 16 C 0.152 3.848 17 N -0.606 5.606 18 C -0.262 4.262 19 H 0.088 0.912 20 C 0.024 3.976 21 N -0.906 5.906 22 Si 0.880 3.120 23 H -0.287 1.287 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.129 3.871 27 C -0.129 4.129 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.263 0.737 43 H 0.029 0.971 44 H 0.082 0.918 45 H 0.063 0.937 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.607 20.166 -2.582 31.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.058 3.942 4 C -0.193 4.193 5 C -0.135 4.135 6 C -0.135 4.135 7 C -0.192 4.192 8 C 0.056 3.944 9 O -0.196 6.196 10 C -0.010 4.010 11 C 0.300 3.700 12 O -0.369 6.369 13 O -0.269 6.269 14 C 0.046 3.954 15 C -0.188 4.188 16 C 0.026 3.974 17 N -0.329 5.329 18 C -0.390 4.390 19 H 0.105 0.895 20 C -0.175 4.175 21 N -0.549 5.549 22 Si 0.710 3.290 23 H -0.215 1.215 24 H -0.230 1.230 25 H -0.195 1.195 26 C 0.003 3.997 27 C -0.168 4.168 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.100 0.900 45 H 0.082 0.918 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.579 19.326 -2.587 31.374 hybrid contribution -0.304 -0.090 -1.002 1.051 sum -24.883 19.236 -3.589 31.655 Atomic orbital electron populations 1.23090 0.78491 1.04239 1.01062 1.86259 1.21056 1.25596 1.88675 1.18281 0.89006 0.85515 1.01379 1.21090 1.00031 0.91476 1.06705 1.20886 0.94637 0.97007 1.00975 1.20883 0.93727 0.97915 1.00936 1.21163 1.00748 0.91023 1.06306 1.18261 0.88237 0.85691 1.02227 1.86205 1.16154 1.28177 1.89056 1.21929 0.80215 0.93629 1.05195 1.22730 0.82229 0.90988 0.74021 1.90718 1.64149 1.38652 1.43368 1.86496 1.20746 1.36301 1.83370 1.22955 0.94929 0.79015 0.98490 1.22479 1.01121 1.00549 0.94672 1.20886 0.88075 0.91863 0.96610 1.44438 1.07176 1.70860 1.10457 1.18923 0.91926 1.33593 0.94523 0.89490 1.25288 0.95479 0.98824 0.97956 1.69831 1.00500 1.47076 1.37446 0.86991 0.78541 0.78178 0.85262 1.21505 1.22961 1.19473 1.21382 1.00084 0.90578 0.87702 1.22259 0.94050 1.01021 0.99493 0.92701 0.88037 0.92715 0.84679 0.85491 0.85321 0.84397 0.87779 0.87694 0.89997 0.90738 0.92078 0.95473 0.91013 0.92690 0.95311 0.89961 0.91801 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.54 10.28 -34.21 -0.35 -3.90 16 3 C 0.10 1.13 6.70 -39.12 -0.26 0.87 16 4 C -0.17 -1.38 9.04 -39.46 -0.36 -1.73 16 5 C -0.12 -0.79 10.04 -39.57 -0.40 -1.19 16 6 C -0.12 -0.81 10.04 -39.57 -0.40 -1.21 16 7 C -0.17 -1.44 9.04 -39.46 -0.36 -1.80 16 8 C 0.10 1.14 6.70 -39.12 -0.26 0.88 16 9 O -0.28 -3.77 9.45 -47.34 -0.45 -4.21 16 10 C 0.07 0.70 5.33 36.01 0.19 0.90 16 11 C 0.46 6.77 8.01 36.01 0.29 7.06 16 12 O -0.48 -8.89 15.72 -25.48 -0.40 -9.29 16 13 O -0.35 -5.36 9.88 -39.22 -0.39 -5.74 16 14 C 0.10 1.72 2.42 -26.69 -0.06 1.65 16 15 C -0.15 -2.62 5.71 -26.61 -0.15 -2.77 16 16 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 17 N -0.61 -14.40 2.77 -172.32 -0.48 -14.88 16 18 C -0.26 -7.26 10.03 -15.06 -0.15 -7.41 16 19 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 20 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 21 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 22 Si 0.88 22.18 24.35 -169.99 -4.14 18.04 16 23 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 24 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.27 -6.72 6.63 56.52 0.37 -6.35 16 26 C 0.13 2.79 4.20 -3.71 -0.02 2.77 16 27 C -0.13 -2.31 5.74 -26.61 -0.15 -2.46 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 34 H 0.14 0.83 6.30 -52.49 -0.33 0.50 16 35 H 0.10 0.80 7.65 -51.93 -0.40 0.41 16 36 H 0.11 0.82 7.68 -51.93 -0.40 0.42 16 37 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 44 H 0.08 1.92 4.50 -51.93 -0.23 1.69 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -34.81 372.58 -7.66 -42.46 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.63 Total: -1.66 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.21 Total: 0.34 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.30 Total: -41.65 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -1.59 Total: -23.14 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.81 -7.66 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120823909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.170 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds