Wall clock time and date at job start Tue Mar 31 2020 18:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35988 * 116.99758 * 2 1 4 4 C 1.38561 * 120.07555 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99864 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.14691 * 359.97438 * 5 4 3 7 7 C 1.38237 * 120.14677 * 0.02562 * 6 5 4 8 8 C 1.38572 * 120.00114 * 359.71554 * 7 6 5 9 9 O 1.35986 * 120.07666 * 180.27733 * 8 7 6 10 10 C 1.42906 * 116.99993 * 0.27646 * 9 8 7 11 11 C 1.50703 * 109.47203 * 180.02562 * 10 9 8 12 12 O 1.20832 * 119.99693 * 0.02562 * 11 10 9 13 13 O 1.34217 * 120.00160 * 180.02562 * 11 10 9 14 14 C 1.45200 * 117.00339 * 180.02562 * 13 11 10 15 15 C 1.53035 * 109.46183 * 270.02231 * 14 13 11 16 16 C 1.53192 * 109.31564 * 178.59347 * 15 14 13 17 17 N 1.46932 * 108.75750 * 54.65906 * 16 15 14 18 18 C 1.36937 * 120.62885 * 126.40602 * 17 16 15 19 19 H 1.08004 * 119.99976 * 332.60713 * 18 17 16 20 20 C 1.38810 * 120.00380 * 152.60328 * 18 17 16 21 21 N 1.31615 * 120.00370 * 159.33947 * 20 18 17 22 22 Si 1.86797 * 119.99784 * 339.34998 * 20 18 17 23 23 H 1.48495 * 109.47430 * 92.93763 * 22 20 18 24 24 H 1.48504 * 109.46873 * 212.94153 * 22 20 18 25 25 H 1.48499 * 109.46976 * 332.93751 * 22 20 18 26 26 C 1.46926 * 118.74099 * 306.38136 * 17 16 15 27 27 C 1.53043 * 109.46114 * 149.96930 * 14 13 11 28 28 H 1.09000 * 109.46650 * 299.99596 * 1 2 3 29 29 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47435 * 60.00236 * 1 2 3 31 31 H 1.07997 * 120.00136 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.92680 * 179.97438 * 5 4 3 33 33 H 1.08006 * 119.92461 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.00430 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.47219 * 300.00259 * 10 9 8 36 36 H 1.08997 * 109.46632 * 60.00509 * 10 9 8 37 37 H 1.09002 * 109.45866 * 29.99814 * 14 13 11 38 38 H 1.08993 * 109.50140 * 298.56926 * 15 14 13 39 39 H 1.09003 * 109.49373 * 58.66178 * 15 14 13 40 40 H 1.08989 * 109.60203 * 294.87358 * 16 15 14 41 41 H 1.08996 * 109.70110 * 174.50564 * 16 15 14 42 42 H 0.97000 * 120.00190 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.58299 * 293.82170 * 26 17 16 44 44 H 1.09002 * 109.70217 * 173.46633 * 26 17 16 45 45 H 1.09002 * 109.49675 * 301.33473 * 27 14 13 46 46 H 1.08992 * 109.49612 * 61.40412 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 3.3030 3.6798 -0.0005 7 6 4.0603 2.5233 0.0000 8 6 3.4360 1.2862 0.0060 9 8 4.1795 0.1476 0.0122 10 6 5.6003 0.3006 0.0184 11 6 6.2519 -1.0583 0.0241 12 8 5.5695 -2.0554 0.0225 13 8 7.5901 -1.1609 0.0309 14 6 8.1485 -2.5012 0.0355 15 6 8.3369 -2.9701 1.4801 16 6 8.8932 -4.3974 1.4810 17 7 10.1196 -4.4271 0.6724 18 6 11.2855 -4.9239 1.1913 19 1 11.4619 -4.8862 2.2561 20 6 12.2405 -5.4760 0.3487 21 7 13.4903 -5.5785 0.7482 22 14 11.7518 -6.0731 -1.3525 23 1 11.9617 -4.9832 -2.3390 24 1 12.5854 -7.2446 -1.7242 25 1 10.3199 -6.4665 -1.3466 26 6 10.0713 -3.9142 -0.7035 27 6 9.5014 -2.4924 -0.6799 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 0.2146 2.3196 -0.0014 32 1 1.3343 4.5114 -0.0019 33 1 3.7909 4.6434 -0.0014 34 1 5.1386 2.5839 0.0008 35 1 5.9107 0.8482 -0.8715 36 1 5.9024 0.8525 0.9084 37 1 7.4691 -3.1794 -0.4808 38 1 9.0356 -2.3067 1.9898 39 1 7.3768 -2.9537 1.9959 40 1 8.1567 -5.0772 1.0528 41 1 9.1214 -4.7022 2.5023 42 1 14.1578 -5.9640 0.1593 43 1 9.4308 -4.5546 -1.3099 44 1 11.0763 -3.8980 -1.1252 45 1 9.3703 -2.1361 -1.7016 46 1 10.1888 -1.8331 -0.1500 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120823909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:14 Heat of formation + Delta-G solvation = -119.164478 kcal Electronic energy + Delta-G solvation = -28434.846612 eV Core-core repulsion = 24290.932767 eV Total energy + Delta-G solvation = -4143.913845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97190 -41.38039 -39.74155 -39.13278 -37.85009 -37.34109 -34.67076 -32.58959 -32.09504 -31.50636 -31.29652 -29.58520 -28.08524 -26.98602 -24.75718 -24.02369 -23.28804 -23.27954 -21.90542 -21.25293 -19.91114 -18.99159 -18.74179 -18.23978 -17.88793 -17.80823 -17.24308 -16.86663 -16.76676 -16.11449 -15.99091 -15.72185 -15.66330 -15.45169 -15.32085 -14.79524 -14.64447 -14.49452 -14.23622 -13.94593 -13.65904 -13.61119 -13.52537 -13.00629 -12.84496 -12.62276 -12.46782 -12.35232 -12.23928 -12.20160 -12.06895 -12.03747 -12.00166 -11.66055 -11.59966 -11.46081 -11.16639 -10.75229 -9.74357 -9.03802 -8.86853 -8.18134 -5.52025 0.29701 0.44037 0.99868 1.01092 1.28536 1.41926 1.50308 2.37857 2.39589 2.43564 2.75558 3.00771 3.22954 3.40968 3.65177 3.73236 3.87168 3.88957 3.99902 4.03013 4.04435 4.11698 4.19152 4.31135 4.36632 4.38050 4.43345 4.49597 4.52665 4.62515 4.67303 4.71382 4.74779 4.84953 4.86595 4.94831 5.08992 5.19487 5.20127 5.34447 5.45583 5.54450 5.73558 5.83079 5.98567 6.10459 6.54569 6.61566 6.85520 7.56540 7.96536 9.01264 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.002063 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.951430 B =13572.216381 C =13953.377628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.074 3.926 4 C -0.175 4.175 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.173 4.173 8 C 0.068 3.932 9 O -0.318 6.318 10 C 0.071 3.929 11 C 0.460 3.540 12 O -0.525 6.525 13 O -0.342 6.342 14 C 0.104 3.896 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.620 5.620 18 C -0.251 4.251 19 H 0.055 0.945 20 C -0.032 4.032 21 N -0.953 5.953 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.309 1.309 25 H -0.265 1.265 26 C 0.122 3.878 27 C -0.119 4.119 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.263 0.737 43 H 0.036 0.964 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.603 23.233 -3.822 35.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.029 3.971 4 C -0.194 4.194 5 C -0.133 4.133 6 C -0.136 4.136 7 C -0.191 4.191 8 C 0.023 3.977 9 O -0.233 6.233 10 C -0.005 4.005 11 C 0.303 3.697 12 O -0.414 6.414 13 O -0.259 6.259 14 C 0.049 3.951 15 C -0.177 4.177 16 C 0.023 3.977 17 N -0.344 5.344 18 C -0.381 4.381 19 H 0.073 0.927 20 C -0.228 4.228 21 N -0.598 5.598 22 Si 0.771 3.229 23 H -0.194 1.194 24 H -0.238 1.238 25 H -0.189 1.189 26 C -0.003 4.003 27 C -0.158 4.158 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.178 0.822 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.624 22.443 -3.838 35.032 hybrid contribution 0.189 -0.932 -0.527 1.088 sum -26.434 21.511 -4.365 34.359 Atomic orbital electron populations 1.23316 0.76593 1.05187 1.02424 1.86190 1.23333 1.26877 1.89185 1.18716 0.89496 0.86086 1.02831 1.21392 1.01045 0.91039 1.05913 1.21322 0.95114 0.97557 0.99292 1.21305 0.93969 0.98667 0.99618 1.21474 1.02032 0.90290 1.05326 1.18648 0.88488 0.86038 1.04485 1.86130 1.17236 1.30027 1.89913 1.22134 0.79337 0.90888 1.08097 1.23628 0.81528 0.92305 0.72259 1.90707 1.64737 1.40470 1.45450 1.86495 1.21426 1.34599 1.83390 1.22688 0.94586 0.80058 0.97743 1.22302 1.01373 0.98594 0.95411 1.21001 0.86893 0.93805 0.95989 1.44545 1.07038 1.71208 1.11636 1.18849 0.93185 1.32691 0.93343 0.92675 1.25894 0.95295 0.99578 1.01989 1.69954 1.01616 1.49042 1.39237 0.85980 0.77993 0.77632 0.81333 1.19364 1.23828 1.18930 1.21425 0.99606 0.92974 0.86343 1.22052 0.94040 0.98283 1.01386 0.91304 0.87447 0.91265 0.82710 0.82632 0.82508 0.82215 0.84529 0.84675 0.90763 0.90892 0.90902 0.94836 0.91358 0.92810 0.94596 0.91645 0.88914 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.15 10.28 -79.54 -0.82 -8.97 16 3 C 0.07 1.57 6.70 22.57 0.15 1.72 16 4 C -0.18 -2.43 9.04 22.35 0.20 -2.23 16 5 C -0.11 -1.19 10.04 22.28 0.22 -0.96 16 6 C -0.12 -1.22 10.04 22.27 0.22 -1.00 16 7 C -0.17 -2.40 9.04 22.35 0.20 -2.20 16 8 C 0.07 1.46 6.70 22.57 0.15 1.61 16 9 O -0.32 -8.29 9.45 -66.96 -0.63 -8.93 16 10 C 0.07 1.33 5.33 71.24 0.38 1.71 16 11 C 0.46 12.79 8.01 71.24 0.57 13.36 16 12 O -0.53 -19.11 15.72 28.38 0.45 -18.67 16 13 O -0.34 -9.61 9.88 -51.29 -0.51 -10.12 16 14 C 0.10 3.38 2.42 30.62 0.07 3.46 16 15 C -0.14 -4.68 5.71 30.67 0.18 -4.50 16 16 C 0.15 5.91 6.52 86.36 0.56 6.48 16 17 N -0.62 -29.32 2.77 -699.11 -1.94 -31.26 16 18 C -0.25 -14.23 10.03 84.03 0.84 -13.39 16 19 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 20 C -0.03 -1.89 5.23 84.86 0.44 -1.44 16 21 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 22 Si 0.94 46.09 24.35 68.60 1.67 47.76 16 23 H -0.27 -12.10 6.62 99.48 0.66 -11.45 16 24 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 25 H -0.26 -12.58 6.63 99.48 0.66 -11.91 16 26 C 0.12 5.10 4.20 86.36 0.36 5.46 16 27 C -0.12 -3.98 5.74 30.67 0.18 -3.81 16 28 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 31 H 0.16 1.34 6.30 -2.91 -0.02 1.32 16 32 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 33 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 34 H 0.16 1.32 6.30 -2.91 -0.02 1.30 16 35 H 0.14 1.64 7.65 -2.39 -0.02 1.62 16 36 H 0.14 1.69 7.68 -2.39 -0.02 1.67 16 37 H 0.07 2.59 7.16 -2.39 -0.02 2.57 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.04 1.47 7.07 -2.39 -0.02 1.45 16 44 H 0.07 2.97 4.50 -2.39 -0.01 2.95 16 45 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -78.42 372.58 5.27 -73.14 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.89 Total: 10.60 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.85 Total: 5.61 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -1.63 Total: -90.45 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -1.51 Total: -46.68 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.67 Total: 47.76 kcal Total: -78.42 5.27 -73.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120823909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.020 kcal (2) G-P(sol) polarization free energy of solvation -78.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds