Wall clock time and date at job start Tue Mar 31 2020 18:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35788 * 117.00308 * 2 1 4 4 C 1.38854 * 119.92460 * 0.02562 * 3 2 1 5 5 C 1.37763 * 120.15419 * 179.97438 * 4 3 2 6 6 C 1.39759 * 120.00371 * 0.02562 * 5 4 3 7 7 C 1.47466 * 120.08021 * 180.02562 * 6 5 4 8 8 O 1.21504 * 120.00423 * 180.02562 * 7 6 5 9 9 O 1.34755 * 119.99951 * 359.97438 * 7 6 5 10 10 C 1.45197 * 117.00324 * 180.02562 * 9 7 6 11 11 C 1.53046 * 109.46173 * 270.03328 * 10 9 7 12 12 C 1.53185 * 109.31095 * 178.59948 * 11 10 9 13 13 N 1.46926 * 108.76816 * 54.65478 * 12 11 10 14 14 C 1.36937 * 120.62884 * 126.40561 * 13 12 11 15 15 H 1.07992 * 120.00368 * 332.60212 * 14 13 12 16 16 C 1.38816 * 119.99814 * 152.60972 * 14 13 12 17 17 N 1.31618 * 119.99728 * 159.33765 * 16 14 13 18 18 Si 1.86794 * 119.99936 * 339.34202 * 16 14 13 19 19 H 1.48503 * 109.47348 * 92.94176 * 18 16 14 20 20 H 1.48502 * 109.47024 * 212.94074 * 18 16 14 21 21 H 1.48497 * 109.47384 * 332.93988 * 18 16 14 22 22 C 1.46926 * 118.73788 * 306.38343 * 13 12 11 23 23 C 1.53037 * 109.46088 * 149.97515 * 10 9 7 24 24 C 1.39796 * 119.84396 * 359.72677 * 6 5 4 25 25 C 1.38116 * 119.84648 * 0.52842 * 24 6 5 26 26 O 1.36003 * 120.00363 * 179.74493 * 25 24 6 27 27 C 1.42904 * 116.99657 * 359.72391 * 26 25 24 28 28 H 1.08996 * 109.47591 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46894 * 299.99973 * 1 2 3 30 30 H 1.09000 * 109.46915 * 59.99985 * 1 2 3 31 31 H 1.08000 * 119.91630 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99490 * 180.02562 * 5 4 3 33 33 H 1.09006 * 109.45840 * 30.00116 * 10 9 7 34 34 H 1.08994 * 109.49266 * 298.56357 * 11 10 9 35 35 H 1.09005 * 109.49469 * 58.65730 * 11 10 9 36 36 H 1.08998 * 109.60198 * 294.86375 * 12 11 10 37 37 H 1.09002 * 109.70040 * 174.50346 * 12 11 10 38 38 H 0.97001 * 119.99505 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.58417 * 293.82055 * 22 13 12 40 40 H 1.08994 * 109.70286 * 173.46623 * 22 13 12 41 41 H 1.08996 * 109.49638 * 301.33553 * 23 10 9 42 42 H 1.09001 * 109.49723 * 61.43656 * 23 10 9 43 43 H 1.08003 * 120.07645 * 180.29246 * 24 6 5 44 44 H 1.08998 * 109.47192 * 179.97438 * 27 26 25 45 45 H 1.09007 * 109.47122 * 60.00079 * 27 26 25 46 46 H 1.08997 * 109.47076 * 300.00099 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2878 2.3734 0.0005 5 6 1.9083 3.6034 0.0011 6 6 3.3037 3.6821 0.0005 7 6 3.9698 4.9978 0.0017 8 8 5.1830 5.0646 0.0007 9 8 3.2329 6.1260 0.0027 10 6 3.9555 7.3854 0.0032 11 6 4.2106 7.8263 1.4464 12 6 5.0034 9.1371 1.4430 13 7 4.2809 10.1244 0.6294 14 6 3.9639 11.3537 1.1428 15 1 3.8249 11.4750 2.2069 16 6 3.8210 12.4439 0.2955 17 7 3.1403 13.4990 0.6898 18 14 4.5947 12.4132 -1.4044 19 1 3.6039 11.9115 -2.3903 20 1 5.0162 13.7864 -1.7813 21 1 5.7790 11.5175 -1.3932 22 6 3.9055 9.7679 -0.7456 23 6 3.1253 8.4498 -0.7177 24 6 4.0666 2.5107 0.0052 25 6 3.4379 1.2809 -0.0007 26 8 4.1770 0.1393 -0.0014 27 6 5.5984 0.2867 -0.0019 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2094 2.3140 0.0005 32 1 1.3165 4.5067 0.0019 33 1 4.9080 7.2577 -0.5112 34 1 3.2581 7.9783 1.9540 35 1 4.7818 7.0571 1.9662 36 1 5.9918 8.9655 1.0169 37 1 5.1046 9.5079 2.4630 38 1 3.0408 14.2610 0.0978 39 1 4.8045 9.6477 -1.3502 40 1 3.2811 10.5533 -1.1714 41 1 2.9241 8.1246 -1.7384 42 1 2.1831 8.5959 -0.1894 43 1 5.1452 2.5672 0.0096 44 1 6.0659 -0.6980 -0.0020 45 1 5.9072 0.8350 0.8882 46 1 5.9064 0.8356 -0.8918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121057915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:33 Heat of formation + Delta-G solvation = -102.751250 kcal Electronic energy + Delta-G solvation = -28799.002532 eV Core-core repulsion = 24655.800418 eV Total energy + Delta-G solvation = -4143.202114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12505 -40.23137 -38.88416 -37.90915 -36.91916 -35.96522 -32.73275 -31.13679 -30.82044 -30.56576 -30.33271 -27.92642 -27.62223 -25.37869 -23.99328 -22.98091 -22.55069 -21.92720 -20.87725 -19.65254 -19.05975 -18.10873 -17.37408 -16.94247 -16.60430 -16.51825 -16.16105 -15.78070 -15.62482 -15.16813 -15.15062 -14.91006 -14.23114 -13.93857 -13.84091 -13.52611 -13.35194 -13.08124 -12.93765 -12.89783 -12.54657 -12.44180 -12.08535 -11.89004 -11.77695 -11.59897 -11.56148 -11.45302 -11.26188 -10.88293 -10.79366 -10.58553 -10.45488 -10.15358 -9.88074 -9.76705 -9.44000 -9.22195 -8.67928 -8.28244 -7.05392 -5.98121 -3.34789 0.42641 0.93723 2.43592 2.64718 2.79754 2.89588 3.28931 3.43436 3.46795 3.49501 4.33461 4.49435 4.50676 4.54045 4.67573 4.74696 4.78211 4.87040 4.87399 4.89003 4.93101 5.08444 5.11650 5.18440 5.19982 5.21403 5.35523 5.49552 5.58726 5.74748 5.79880 5.92856 5.96372 6.08758 6.11521 6.14824 6.23575 6.32225 6.52055 6.55972 6.58815 6.61675 6.65244 6.90690 7.10452 7.82659 7.91194 8.29422 8.88942 9.67647 10.04121 11.17661 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.002332 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.337137 B =12002.281699 C =12566.533881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.133 3.867 4 C -0.189 4.189 5 C -0.051 4.051 6 C -0.122 4.122 7 C 0.509 3.491 8 O -0.509 6.509 9 O -0.349 6.349 10 C 0.099 3.901 11 C -0.148 4.148 12 C 0.152 3.848 13 N -0.606 5.606 14 C -0.261 4.261 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.129 3.871 23 C -0.129 4.129 24 C -0.111 4.111 25 C 0.086 3.914 26 O -0.305 6.305 27 C 0.023 3.977 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.263 0.737 39 H 0.028 0.972 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.347 -28.513 -2.459 28.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.087 3.913 4 C -0.208 4.208 5 C -0.070 4.070 6 C -0.124 4.124 7 C 0.353 3.647 8 O -0.399 6.399 9 O -0.266 6.266 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.026 3.974 13 N -0.329 5.329 14 C -0.390 4.390 15 H 0.105 0.895 16 C -0.175 4.175 17 N -0.549 5.549 18 Si 0.710 3.290 19 H -0.215 1.215 20 H -0.230 1.230 21 H -0.195 1.195 22 C 0.003 3.997 23 C -0.168 4.168 24 C -0.130 4.130 25 C 0.040 3.960 26 O -0.219 6.219 27 C -0.072 4.072 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.168 0.832 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.017 -28.645 -2.467 28.909 hybrid contribution 0.467 0.450 -0.997 1.189 sum -2.550 -28.195 -3.464 28.521 Atomic orbital electron populations 1.23165 0.77994 1.04356 1.01695 1.86146 1.21526 1.25801 1.88012 1.18572 0.89149 0.85417 0.98180 1.21081 1.00499 0.90987 1.08208 1.21257 0.93143 0.98155 0.94401 1.18852 0.93600 0.90173 1.09740 1.20919 0.85651 0.85220 0.72863 1.90815 1.14934 1.88014 1.46173 1.86592 1.41668 1.15139 1.83203 1.22901 0.95732 0.78546 0.98311 1.22468 1.02213 0.99275 0.94787 1.20883 0.92654 0.87383 0.96489 1.44430 1.64273 1.13767 1.10475 1.18925 1.42215 0.83251 0.94561 0.89507 1.25285 0.98925 0.95381 0.97942 1.69836 1.40404 1.07258 1.37398 0.86989 0.80634 0.76061 0.85277 1.21503 1.22988 1.19485 1.21373 0.96607 0.94056 0.87694 1.22242 1.00395 0.94750 0.99449 1.21138 1.01199 0.89525 1.01118 1.17968 0.88268 0.85964 1.03786 1.86178 1.19010 1.27462 1.89230 1.23141 0.78208 1.04113 1.01753 0.87929 0.92251 0.92282 0.83752 0.83536 0.90127 0.90805 0.92161 0.95549 0.91088 0.92699 0.95367 0.90020 0.91853 0.90371 0.83187 0.87931 0.92365 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.30 -2.91 10.26 -33.74 -0.35 -3.25 16 3 C 0.13 1.38 6.71 -38.91 -0.26 1.11 16 4 C -0.19 -1.67 9.01 -39.53 -0.36 -2.02 16 5 C -0.05 -0.53 9.60 -39.19 -0.38 -0.90 16 6 C -0.12 -1.52 5.87 -104.99 -0.62 -2.14 16 7 C 0.51 7.72 7.86 34.49 0.27 8.00 16 8 O -0.51 -8.83 15.60 -19.27 -0.30 -9.14 16 9 O -0.35 -5.49 9.12 -40.64 -0.37 -5.86 16 10 C 0.10 1.71 2.42 -26.69 -0.06 1.65 16 11 C -0.15 -2.60 5.72 -26.61 -0.15 -2.75 16 12 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 13 N -0.61 -14.39 2.77 -172.33 -0.48 -14.86 16 14 C -0.26 -7.25 10.04 -15.06 -0.15 -7.40 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 16 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 17 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 18 Si 0.88 22.14 24.35 -169.99 -4.14 18.00 16 19 H -0.29 -6.91 6.62 56.52 0.37 -6.54 16 20 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 21 H -0.27 -6.70 6.63 56.52 0.37 -6.32 16 22 C 0.13 2.79 4.20 -3.71 -0.02 2.77 16 23 C -0.13 -2.32 5.74 -26.61 -0.15 -2.47 16 24 C -0.11 -1.27 8.58 -39.04 -0.33 -1.60 16 25 C 0.09 0.95 6.69 -39.18 -0.26 0.69 16 26 O -0.31 -3.26 10.28 -34.41 -0.35 -3.62 16 27 C 0.02 0.16 9.81 101.05 0.99 1.15 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.24 7.65 -51.93 -0.40 -0.15 16 30 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 31 H 0.14 0.85 6.27 -52.49 -0.33 0.52 16 32 H 0.15 1.38 7.60 -52.49 -0.40 0.98 16 33 H 0.08 1.46 7.16 -51.93 -0.37 1.08 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 40 H 0.08 1.91 4.50 -51.93 -0.23 1.68 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.15 1.62 5.87 -52.48 -0.31 1.31 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 46 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -33.51 370.90 -6.81 -40.32 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.58 Total: -1.21 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.61 Total: 0.80 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.30 Total: -41.64 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -1.37 Total: -21.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.51 -6.81 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121057915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.433 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds