Wall clock time and date at job start Tue Mar 31 2020 18:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35788 * 117.00308 * 2 1 4 4 C 1.38854 * 119.92460 * 0.02562 * 3 2 1 5 5 C 1.37763 * 120.15419 * 179.97438 * 4 3 2 6 6 C 1.39759 * 120.00371 * 0.02562 * 5 4 3 7 7 C 1.47466 * 120.08021 * 180.02562 * 6 5 4 8 8 O 1.21504 * 120.00423 * 180.02562 * 7 6 5 9 9 O 1.34755 * 119.99951 * 359.97438 * 7 6 5 10 10 C 1.45197 * 117.00324 * 180.02562 * 9 7 6 11 11 C 1.53046 * 109.46173 * 270.03328 * 10 9 7 12 12 C 1.53185 * 109.31095 * 178.59948 * 11 10 9 13 13 N 1.46926 * 108.76816 * 54.65478 * 12 11 10 14 14 C 1.36937 * 120.62884 * 126.40561 * 13 12 11 15 15 H 1.07992 * 120.00368 * 332.60212 * 14 13 12 16 16 C 1.38816 * 119.99814 * 152.60972 * 14 13 12 17 17 N 1.31618 * 119.99728 * 159.33765 * 16 14 13 18 18 Si 1.86794 * 119.99936 * 339.34202 * 16 14 13 19 19 H 1.48503 * 109.47348 * 92.94176 * 18 16 14 20 20 H 1.48502 * 109.47024 * 212.94074 * 18 16 14 21 21 H 1.48497 * 109.47384 * 332.93988 * 18 16 14 22 22 C 1.46926 * 118.73788 * 306.38343 * 13 12 11 23 23 C 1.53037 * 109.46088 * 149.97515 * 10 9 7 24 24 C 1.39796 * 119.84396 * 359.72677 * 6 5 4 25 25 C 1.38116 * 119.84648 * 0.52842 * 24 6 5 26 26 O 1.36003 * 120.00363 * 179.74493 * 25 24 6 27 27 C 1.42904 * 116.99657 * 359.72391 * 26 25 24 28 28 H 1.08996 * 109.47591 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46894 * 299.99973 * 1 2 3 30 30 H 1.09000 * 109.46915 * 59.99985 * 1 2 3 31 31 H 1.08000 * 119.91630 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99490 * 180.02562 * 5 4 3 33 33 H 1.09006 * 109.45840 * 30.00116 * 10 9 7 34 34 H 1.08994 * 109.49266 * 298.56357 * 11 10 9 35 35 H 1.09005 * 109.49469 * 58.65730 * 11 10 9 36 36 H 1.08998 * 109.60198 * 294.86375 * 12 11 10 37 37 H 1.09002 * 109.70040 * 174.50346 * 12 11 10 38 38 H 0.97001 * 119.99505 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.58417 * 293.82055 * 22 13 12 40 40 H 1.08994 * 109.70286 * 173.46623 * 22 13 12 41 41 H 1.08996 * 109.49638 * 301.33553 * 23 10 9 42 42 H 1.09001 * 109.49723 * 61.43656 * 23 10 9 43 43 H 1.08003 * 120.07645 * 180.29246 * 24 6 5 44 44 H 1.08998 * 109.47192 * 179.97438 * 27 26 25 45 45 H 1.09007 * 109.47122 * 60.00079 * 27 26 25 46 46 H 1.08997 * 109.47076 * 300.00099 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2878 2.3734 0.0005 5 6 1.9083 3.6034 0.0011 6 6 3.3037 3.6821 0.0005 7 6 3.9698 4.9978 0.0017 8 8 5.1830 5.0646 0.0007 9 8 3.2329 6.1260 0.0027 10 6 3.9555 7.3854 0.0032 11 6 4.2106 7.8263 1.4464 12 6 5.0034 9.1371 1.4430 13 7 4.2809 10.1244 0.6294 14 6 3.9639 11.3537 1.1428 15 1 3.8249 11.4750 2.2069 16 6 3.8210 12.4439 0.2955 17 7 3.1403 13.4990 0.6898 18 14 4.5947 12.4132 -1.4044 19 1 3.6039 11.9115 -2.3903 20 1 5.0162 13.7864 -1.7813 21 1 5.7790 11.5175 -1.3932 22 6 3.9055 9.7679 -0.7456 23 6 3.1253 8.4498 -0.7177 24 6 4.0666 2.5107 0.0052 25 6 3.4379 1.2809 -0.0007 26 8 4.1770 0.1393 -0.0014 27 6 5.5984 0.2867 -0.0019 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2094 2.3140 0.0005 32 1 1.3165 4.5067 0.0019 33 1 4.9080 7.2577 -0.5112 34 1 3.2581 7.9783 1.9540 35 1 4.7818 7.0571 1.9662 36 1 5.9918 8.9655 1.0169 37 1 5.1046 9.5079 2.4630 38 1 3.0408 14.2610 0.0978 39 1 4.8045 9.6477 -1.3502 40 1 3.2811 10.5533 -1.1714 41 1 2.9241 8.1246 -1.7384 42 1 2.1831 8.5959 -0.1894 43 1 5.1452 2.5672 0.0096 44 1 6.0659 -0.6980 -0.0020 45 1 5.9072 0.8350 0.8882 46 1 5.9064 0.8356 -0.8918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121057915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:32 Heat of formation + Delta-G solvation = -123.277584 kcal Electronic energy + Delta-G solvation = -28799.892620 eV Core-core repulsion = 24655.800418 eV Total energy + Delta-G solvation = -4144.092202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01591 -41.30398 -39.57653 -39.35104 -37.84200 -37.30318 -34.63621 -32.56579 -32.08005 -31.67864 -31.51046 -28.60377 -28.13679 -27.06265 -25.18611 -24.48508 -23.64331 -23.15851 -21.97731 -21.22454 -19.90222 -19.00525 -18.94329 -18.20084 -17.54038 -17.31821 -17.25043 -17.05719 -16.83952 -16.21827 -16.00302 -15.83897 -15.52283 -15.45910 -15.33615 -14.78515 -14.56320 -14.34909 -14.12339 -14.00768 -13.73834 -13.67284 -13.53216 -13.10342 -12.81539 -12.60670 -12.47818 -12.42211 -12.21957 -12.16992 -12.14953 -12.08071 -12.04742 -11.70018 -11.63615 -11.45326 -11.13718 -10.74381 -9.98210 -9.05140 -9.02552 -8.17481 -5.51184 -0.45649 0.17671 1.29452 1.40658 1.42272 1.48677 1.52718 2.18278 2.22599 2.40504 2.57765 3.01730 3.25548 3.49700 3.64319 3.68200 3.77065 3.87253 3.93946 4.06453 4.09328 4.20997 4.30826 4.34488 4.38247 4.40961 4.44226 4.51113 4.54377 4.55471 4.68721 4.71223 4.78436 4.83972 4.87600 4.92028 4.96703 5.06690 5.10721 5.15445 5.23584 5.38212 5.48932 5.84050 5.95456 6.11328 6.42133 6.64217 6.86651 7.57629 7.97647 9.02050 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.002332 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.337137 B =12002.281699 C =12566.533881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.133 3.867 4 C -0.180 4.180 5 C -0.046 4.046 6 C -0.144 4.144 7 C 0.510 3.490 8 O -0.537 6.537 9 O -0.344 6.344 10 C 0.104 3.896 11 C -0.137 4.137 12 C 0.149 3.851 13 N -0.620 5.620 14 C -0.251 4.251 15 H 0.055 0.945 16 C -0.032 4.032 17 N -0.954 5.954 18 Si 0.942 3.058 19 H -0.268 1.268 20 H -0.310 1.310 21 H -0.263 1.263 22 C 0.122 3.878 23 C -0.119 4.119 24 C -0.113 4.113 25 C 0.072 3.928 26 O -0.321 6.321 27 C 0.016 3.984 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.178 0.822 32 H 0.158 0.842 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.263 0.737 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.150 0.850 44 H 0.125 0.875 45 H 0.060 0.940 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 -31.199 -3.689 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.086 3.914 4 C -0.198 4.198 5 C -0.065 4.065 6 C -0.146 4.146 7 C 0.357 3.643 8 O -0.428 6.428 9 O -0.260 6.260 10 C 0.049 3.951 11 C -0.176 4.176 12 C 0.024 3.976 13 N -0.344 5.344 14 C -0.381 4.381 15 H 0.073 0.927 16 C -0.227 4.227 17 N -0.600 5.600 18 Si 0.771 3.229 19 H -0.194 1.194 20 H -0.239 1.239 21 H -0.188 1.188 22 C -0.003 4.003 23 C -0.158 4.158 24 C -0.132 4.132 25 C 0.027 3.973 26 O -0.235 6.235 27 C -0.078 4.078 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.195 0.805 32 H 0.175 0.825 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.167 0.833 44 H 0.143 0.857 45 H 0.079 0.921 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.820 -31.394 -3.705 31.841 hybrid contribution 0.659 1.091 -0.524 1.378 sum -3.160 -30.303 -4.229 30.759 Atomic orbital electron populations 1.23514 0.75662 1.06090 1.03002 1.86135 1.23984 1.25578 1.87612 1.18816 0.89150 0.86269 0.97134 1.21370 1.01987 0.89721 1.06709 1.21418 0.92272 0.99265 0.93513 1.18780 0.94575 0.88781 1.12437 1.21389 0.85451 0.85651 0.71848 1.90799 1.16071 1.88255 1.47710 1.86584 1.41230 1.14799 1.83405 1.22660 0.95514 0.79262 0.97624 1.22297 1.01725 0.98109 0.95478 1.21001 0.93122 0.87631 0.95862 1.44541 1.65183 1.13060 1.11661 1.18852 1.40724 0.85124 0.93363 0.92722 1.25894 0.99680 0.95173 1.01997 1.69961 1.42492 1.08297 1.39204 0.85976 0.80098 0.75561 0.81280 1.19441 1.23888 1.18757 1.21417 0.97073 0.95418 0.86375 1.22043 0.99410 0.93090 1.01252 1.21119 1.01249 0.89552 1.01314 1.18152 0.89032 0.85916 1.04218 1.86156 1.20555 1.27551 1.89259 1.23371 0.76749 1.05676 1.02033 0.86212 0.90913 0.90872 0.80500 0.82477 0.90569 0.91218 0.90824 0.94644 0.91449 0.92829 0.94497 0.91756 0.89097 0.90804 0.83291 0.85696 0.92114 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.43 10.26 -77.16 -0.79 -6.23 16 3 C 0.13 2.47 6.71 22.70 0.15 2.62 16 4 C -0.18 -2.63 9.01 22.30 0.20 -2.43 16 5 C -0.05 -0.85 9.60 22.53 0.22 -0.63 16 6 C -0.14 -3.39 5.87 -20.10 -0.12 -3.51 16 7 C 0.51 14.79 7.86 70.25 0.55 15.34 16 8 O -0.54 -18.14 15.60 19.82 0.31 -17.83 16 9 O -0.34 -10.10 9.12 -56.66 -0.52 -10.62 16 10 C 0.10 3.39 2.42 30.62 0.07 3.46 16 11 C -0.14 -4.63 5.72 30.67 0.18 -4.45 16 12 C 0.15 5.86 6.52 86.36 0.56 6.43 16 13 N -0.62 -29.14 2.77 -699.12 -1.94 -31.08 16 14 C -0.25 -14.18 10.04 84.03 0.84 -13.33 16 15 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 16 C -0.03 -1.88 5.23 84.86 0.44 -1.43 16 17 N -0.95 -59.46 13.97 21.65 0.30 -59.16 16 18 Si 0.94 45.85 24.35 68.60 1.67 47.52 16 19 H -0.27 -12.10 6.62 99.48 0.66 -11.44 16 20 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 21 H -0.26 -12.35 6.63 99.48 0.66 -11.69 16 22 C 0.12 5.10 4.20 86.36 0.36 5.46 16 23 C -0.12 -4.01 5.74 30.67 0.18 -3.83 16 24 C -0.11 -2.50 8.58 22.62 0.19 -2.31 16 25 C 0.07 1.53 6.69 22.53 0.15 1.68 16 26 O -0.32 -6.56 10.28 -79.57 -0.82 -7.38 16 27 C 0.02 0.21 9.81 113.37 1.11 1.32 16 28 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.34 7.65 -2.39 -0.02 0.32 16 30 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 31 H 0.18 1.33 6.27 -2.91 -0.02 1.32 16 32 H 0.16 2.49 7.60 -2.91 -0.02 2.47 16 33 H 0.08 2.60 7.16 -2.38 -0.02 2.58 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.04 1.49 7.08 -2.39 -0.02 1.47 16 40 H 0.06 2.91 4.50 -2.39 -0.01 2.90 16 41 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.15 3.18 5.87 -2.91 -0.02 3.17 16 44 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 0.76 7.65 -2.38 -0.02 0.74 16 46 H 0.06 0.76 7.67 -2.39 -0.02 0.74 16 Total: -1.00 -73.05 370.90 5.33 -67.72 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.90 Total: 11.47 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.21 Total: 5.58 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -1.63 Total: -90.23 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.82 Total: -42.05 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -73.05 5.33 -67.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121057915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.562 kcal (2) G-P(sol) polarization free energy of solvation -73.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds