Wall clock time and date at job start Tue Mar 31 2020 19:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00194 * 2 1 4 4 C 1.53000 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46992 * 64.99670 * 4 3 2 6 6 C 1.46499 * 119.99936 * 90.00137 * 5 4 3 7 7 C 1.50703 * 109.47126 * 89.99796 * 6 5 4 8 8 H 1.08002 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00045 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47015 * 119.99649 * 11 9 7 14 14 H 1.48496 * 109.47036 * 240.00093 * 11 9 7 15 15 C 1.34773 * 119.99969 * 269.72101 * 5 4 3 16 16 O 1.21281 * 120.00220 * 0.02562 * 15 5 4 17 17 C 1.50706 * 120.00080 * 180.02562 * 15 5 4 18 18 C 1.50690 * 109.47185 * 180.02562 * 17 15 5 19 19 C 1.38387 * 119.92522 * 269.72588 * 18 17 15 20 20 C 1.38346 * 120.30521 * 179.72542 * 19 18 17 21 21 C 1.37971 * 120.14633 * 0.55329 * 20 19 18 22 22 C 1.39602 * 119.84754 * 359.72120 * 21 20 19 23 23 C 1.47735 * 120.14909 * 180.02562 * 22 21 20 24 24 O 1.21467 * 119.99630 * 179.97438 * 23 22 21 25 25 O 1.34708 * 119.99666 * 359.97438 * 23 22 21 26 26 C 1.45206 * 116.99599 * 180.02562 * 25 23 22 27 27 C 1.37923 * 119.92607 * 90.00036 * 18 17 15 28 28 H 1.09005 * 109.47031 * 300.00496 * 1 2 3 29 29 H 1.08996 * 109.47115 * 59.99818 * 1 2 3 30 30 H 1.08998 * 109.47832 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47320 * 59.99819 * 3 2 1 32 32 H 1.08998 * 109.46759 * 299.99542 * 3 2 1 33 33 H 1.09000 * 109.46884 * 305.00285 * 4 3 2 34 34 H 1.09000 * 109.46955 * 184.99601 * 4 3 2 35 35 H 1.08994 * 109.47173 * 210.00167 * 6 5 4 36 36 H 1.09005 * 109.47077 * 330.00338 * 6 5 4 37 37 H 0.96995 * 119.99689 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.46762 * 300.00389 * 17 15 5 39 39 H 1.08998 * 109.46924 * 59.99727 * 17 15 5 40 40 H 1.08000 * 119.84755 * 0.02562 * 19 18 17 41 41 H 1.08003 * 119.93061 * 180.25817 * 20 19 18 42 42 H 1.08005 * 120.07520 * 179.75055 * 21 20 19 43 43 H 1.08999 * 109.46761 * 180.02562 * 26 25 23 44 44 H 1.08996 * 109.46920 * 300.00344 * 26 25 23 45 45 H 1.09000 * 109.46988 * 60.00104 * 26 25 23 46 46 H 1.07996 * 120.07613 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2864 1.4004 -2.4149 7 6 5.7443 1.7807 -2.3846 8 1 6.3761 1.4346 -1.5800 9 6 6.2713 2.5715 -3.3836 10 7 5.5018 2.9934 -4.3632 11 14 8.0783 3.0435 -3.3458 12 1 8.7213 2.4452 -2.1484 13 1 8.7477 2.5379 -4.5711 14 1 8.2025 4.5222 -3.2881 15 6 4.1001 -0.7753 -1.3338 16 8 3.8473 -1.4673 -0.3704 17 6 4.5534 -1.4134 -2.6216 18 6 4.6087 -2.9094 -2.4488 19 6 5.7767 -3.5115 -2.0149 20 6 5.8345 -4.8837 -1.8480 21 6 4.7297 -5.6624 -2.1246 22 6 3.5499 -5.0621 -2.5680 23 6 2.3627 -5.8896 -2.8655 24 8 1.3375 -5.3643 -3.2508 25 8 2.4173 -7.2265 -2.7095 26 6 1.2134 -7.9761 -3.0211 27 6 3.4968 -3.6759 -2.7287 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8514 0.5680 0.8409 34 1 3.9786 2.1764 0.0889 35 1 4.0745 0.8455 -3.3288 36 1 3.6750 2.3024 -2.3873 37 1 5.8725 3.5500 -5.0657 38 1 3.8505 -1.1656 -3.4170 39 1 5.5438 -1.0406 -2.8829 40 1 6.6457 -2.9070 -1.8009 41 1 6.7479 -5.3468 -1.5051 42 1 4.7773 -6.7340 -1.9977 43 1 1.3929 -9.0380 -2.8526 44 1 0.3994 -7.6393 -2.3793 45 1 0.9442 -7.8138 -4.0647 46 1 2.5872 -3.2052 -3.0711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129241744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:41 Heat of formation + Delta-G solvation = -158.441704 kcal Electronic energy + Delta-G solvation = -29124.553962 eV Core-core repulsion = 24978.936929 eV Total energy + Delta-G solvation = -4145.617033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68393 -40.90656 -39.66538 -38.58661 -37.52159 -36.60750 -34.58204 -34.02664 -32.31168 -31.42886 -29.18952 -28.76170 -28.20119 -27.04874 -25.11567 -24.89967 -23.97134 -22.72613 -21.75165 -19.98713 -18.70545 -18.51694 -18.20460 -17.95774 -17.50816 -17.41505 -17.02706 -16.95365 -16.64862 -16.27724 -16.12729 -15.84521 -15.37727 -15.05732 -14.58423 -14.56352 -14.35548 -14.23683 -14.02908 -13.51741 -13.46096 -13.31345 -13.14859 -13.06093 -12.99133 -12.78774 -12.65102 -12.55323 -12.51708 -12.09697 -12.06846 -11.89508 -11.85074 -11.63977 -11.63105 -10.75625 -10.58783 -10.50291 -10.01995 -9.74721 -9.37931 -8.17092 -6.32216 -0.32497 0.35938 1.43389 1.45721 1.47295 1.57308 1.63139 1.91552 2.33559 2.47977 2.82384 2.96467 3.13223 3.64113 3.73017 3.89199 3.97241 4.11363 4.16156 4.26059 4.28480 4.28915 4.32303 4.38650 4.42947 4.49764 4.51325 4.56090 4.64972 4.69857 4.75616 4.78354 4.85069 4.91214 4.99337 5.02018 5.17872 5.24380 5.26926 5.40641 5.57212 5.69823 5.87524 5.90471 6.08887 6.32335 6.61990 6.64021 6.87066 7.36796 7.52368 8.88285 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010401 B = 0.003497 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.445613 B = 8005.088391 C = 9710.543820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.050 3.950 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.253 3.747 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.022 3.978 10 N -0.921 5.921 11 Si 0.957 3.043 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.281 1.281 15 C 0.520 3.480 16 O -0.572 6.572 17 C -0.094 4.094 18 C -0.078 4.078 19 C -0.075 4.075 20 C -0.122 4.122 21 C -0.058 4.058 22 C -0.146 4.146 23 C 0.513 3.487 24 O -0.541 6.541 25 O -0.352 6.352 26 C 0.028 3.972 27 C -0.057 4.057 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.027 0.973 36 H 0.020 0.980 37 H 0.267 0.733 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.169 0.831 42 H 0.165 0.835 43 H 0.140 0.860 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -15.526 4.423 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.028 4.028 4 C -0.005 4.005 5 N -0.330 5.330 6 C 0.132 3.868 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.179 4.179 10 N -0.560 5.560 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.205 1.205 14 H -0.207 1.207 15 C 0.309 3.691 16 O -0.453 6.453 17 C -0.133 4.133 18 C -0.079 4.079 19 C -0.093 4.093 20 C -0.140 4.140 21 C -0.076 4.076 22 C -0.147 4.147 23 C 0.360 3.640 24 O -0.433 6.433 25 O -0.268 6.268 26 C -0.065 4.065 27 C -0.076 4.076 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.156 0.844 41 H 0.187 0.813 42 H 0.182 0.818 43 H 0.158 0.842 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.015 -15.810 4.644 16.960 hybrid contribution 0.052 1.207 -0.490 1.304 sum -3.963 -14.603 4.154 15.691 Atomic orbital electron populations 1.22830 0.80516 1.02869 1.00604 1.88072 1.20569 1.28250 1.95445 1.23010 0.94006 0.84827 1.00951 1.21452 0.92637 0.99321 0.87106 1.48088 1.64989 1.06009 1.13955 1.19080 0.95081 0.89692 0.82979 1.21710 0.95423 1.31850 1.09108 0.92532 1.25653 1.01921 0.95507 0.94780 1.70026 1.37377 1.35889 1.12731 0.85522 0.80177 0.77891 0.78179 1.19217 1.20450 1.20704 1.20488 0.76705 0.82152 0.89761 1.90601 1.52180 1.62596 1.39901 1.20604 1.05010 0.91498 0.96225 1.19396 0.94304 0.94001 1.00183 1.21610 0.97188 0.96239 0.94268 1.21487 0.99923 0.92619 0.99954 1.21704 0.90495 1.01769 0.93625 1.19092 0.93697 0.92334 1.09596 1.21368 0.87516 0.81845 0.73261 1.90809 1.33523 1.74257 1.44661 1.86522 1.42125 1.18630 1.79478 1.23622 0.84466 0.96832 1.01562 1.20995 0.97791 0.92407 0.96361 0.92387 0.94040 0.89942 0.90179 0.93702 0.90982 0.88145 0.95543 0.96198 0.92399 0.88683 0.87099 0.84359 0.81343 0.81770 0.84181 0.92185 0.91880 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.40 -14.94 9.52 -142.28 -1.35 -16.29 16 3 C 0.05 1.62 6.28 71.98 0.45 2.08 16 4 C 0.12 4.37 5.86 86.38 0.51 4.88 16 5 N -0.60 -25.53 2.44 -826.14 -2.01 -27.55 16 6 C 0.25 11.89 4.96 85.63 0.42 12.31 16 7 C -0.54 -27.24 9.26 25.60 0.24 -27.00 16 8 H 0.06 2.87 7.81 -2.91 -0.02 2.84 16 9 C 0.02 1.11 5.46 84.65 0.46 1.57 16 10 N -0.92 -49.76 13.29 21.45 0.28 -49.47 16 11 Si 0.96 40.55 29.54 68.60 2.03 42.57 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.52 22.33 7.30 87.66 0.64 22.97 16 16 O -0.57 -26.75 14.85 3.67 0.05 -26.70 16 17 C -0.09 -3.56 4.38 29.10 0.13 -3.43 16 18 C -0.08 -2.67 4.37 -19.91 -0.09 -2.76 16 19 C -0.08 -2.12 9.69 22.33 0.22 -1.91 16 20 C -0.12 -2.70 10.03 22.23 0.22 -2.48 16 21 C -0.06 -1.33 9.62 22.54 0.22 -1.12 16 22 C -0.15 -4.35 5.87 -20.10 -0.12 -4.46 16 23 C 0.51 15.27 7.90 70.33 0.56 15.83 16 24 O -0.54 -19.28 16.14 19.94 0.32 -18.96 16 25 O -0.35 -8.00 9.82 -56.18 -0.55 -8.55 16 26 C 0.03 0.44 10.56 113.37 1.20 1.64 16 27 C -0.06 -1.96 9.24 22.54 0.21 -1.75 16 28 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 2.77 7.41 -2.39 -0.02 2.75 16 34 H 0.10 3.47 8.07 -2.39 -0.02 3.45 16 35 H 0.03 1.31 6.45 -2.39 -0.02 1.29 16 36 H 0.02 0.99 8.07 -2.38 -0.02 0.97 16 37 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 38 H 0.09 3.59 7.35 -2.39 -0.02 3.57 16 39 H 0.11 4.22 7.92 -2.39 -0.02 4.20 16 40 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.16 2.71 7.61 -2.91 -0.02 2.69 16 43 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.11 4.23 7.65 -2.91 -0.02 4.21 16 Total: -1.00 -69.30 396.60 6.25 -63.05 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.97 Total: 23.50 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 6.51 Total: 18.39 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.73 Total: -77.02 kcal Atomic # 8 Polarization: -68.97 SS G_CDS: -1.53 Total: -70.50 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -69.30 6.25 -63.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129241744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.388 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds