Wall clock time and date at job start Tue Mar 31 2020 19:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36008 * 117.00023 * 2 1 4 4 C 1.38230 * 119.97056 * 355.36695 * 3 2 1 5 5 C 1.39698 * 119.94157 * 179.97438 * 4 3 2 6 6 C 1.47618 * 120.05678 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00189 * 233.05283 * 6 5 4 8 8 N 1.34776 * 119.99776 * 53.05283 * 6 5 4 9 9 C 1.46504 * 120.00020 * 176.28405 * 8 6 5 10 10 C 1.50698 * 109.46935 * 89.99929 * 9 8 6 11 11 H 1.08001 * 120.00587 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99676 * 179.72856 * 10 9 8 13 13 N 1.31515 * 120.00283 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00078 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.46621 * 90.00549 * 14 12 10 16 16 H 1.48502 * 109.47480 * 210.00443 * 14 12 10 17 17 H 1.48504 * 109.47140 * 330.00826 * 14 12 10 18 18 C 1.46501 * 120.00010 * 356.27879 * 8 6 5 19 19 C 1.53008 * 109.47221 * 264.17554 * 18 8 6 20 20 C 1.53000 * 117.49534 * 245.49850 * 19 18 8 21 21 C 1.52994 * 117.49830 * 176.83984 * 19 18 8 22 22 C 1.39698 * 119.89030 * 0.28373 * 5 4 3 23 23 C 1.38233 * 119.94344 * 359.46351 * 22 5 4 24 24 O 1.36003 * 119.97554 * 180.25522 * 23 22 5 25 25 C 1.42900 * 116.99854 * 5.01272 * 24 23 22 26 26 C 1.39228 * 119.97145 * 175.39857 * 3 2 1 27 27 O 1.35895 * 119.94464 * 0.02562 * 26 3 2 28 28 H 1.09005 * 109.46989 * 303.72294 * 1 2 3 29 29 H 1.09001 * 109.47564 * 63.71687 * 1 2 3 30 30 H 1.08999 * 109.47150 * 183.71979 * 1 2 3 31 31 H 1.08000 * 120.02743 * 0.03176 * 4 3 2 32 32 H 1.08995 * 109.46872 * 329.99662 * 9 8 6 33 33 H 1.08999 * 109.46720 * 209.99573 * 9 8 6 34 34 H 0.97002 * 120.00419 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.47434 * 24.17301 * 18 8 6 36 36 H 1.09002 * 109.47291 * 144.17681 * 18 8 6 37 37 H 1.09000 * 115.54720 * 31.17169 * 19 18 8 38 38 H 1.08992 * 117.50239 * 0.02562 * 20 19 18 39 39 H 1.08999 * 117.48953 * 145.02251 * 20 19 18 40 40 H 1.09001 * 117.50044 * 214.98084 * 21 19 18 41 41 H 1.09007 * 117.49850 * 0.02562 * 21 19 18 42 42 H 1.07999 * 120.03104 * 179.72126 * 22 5 4 43 43 H 1.09001 * 109.47127 * 63.78107 * 25 24 23 44 44 H 1.09003 * 109.46833 * 183.77725 * 25 24 23 45 45 H 1.08995 * 109.47224 * 303.77698 * 25 24 23 46 46 H 0.96692 * 114.00250 * 90.00314 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2965 2.3690 -0.0967 5 6 1.9313 3.6134 -0.0961 6 6 1.1328 4.8507 -0.1987 7 8 1.3949 5.6742 -1.0540 8 7 0.1133 5.0676 0.6557 9 6 -0.6271 6.3308 0.6070 10 6 -1.7865 6.1971 -0.3463 11 1 -1.9548 5.2646 -0.8646 12 6 -2.6355 7.2636 -0.5532 13 7 -3.6470 7.1471 -1.3856 14 14 -2.3489 8.8741 0.3489 15 1 -1.4601 9.7443 -0.4623 16 1 -3.6489 9.5586 0.5650 17 1 -1.7098 8.5996 1.6609 18 6 -0.2546 4.0401 1.6330 19 6 -1.4040 3.1964 1.0778 20 6 -2.7502 3.2737 1.8008 21 6 -1.8862 2.0160 1.9233 22 6 3.3234 3.6847 -0.0037 23 6 4.0685 2.5248 0.0981 24 8 5.4234 2.5937 0.1933 25 6 6.0013 3.8969 0.2930 26 6 3.4334 1.2858 0.0968 27 8 4.1685 0.1467 0.1906 28 1 -0.3633 0.5706 0.8548 29 1 -0.3634 0.4550 -0.9214 30 1 -0.3633 -1.0255 0.0667 31 1 0.2207 2.3110 -0.1718 32 1 0.0344 7.1267 0.2652 33 1 -1.0010 6.5713 1.6023 34 1 -4.2445 7.8974 -1.5308 35 1 0.6054 3.3992 1.8276 36 1 -0.5695 4.5174 2.5610 37 1 -1.4205 3.0793 -0.0057 38 1 -2.8171 3.9258 2.6715 39 1 -3.6524 3.2070 1.1928 40 1 -2.2205 1.1225 1.3960 41 1 -1.3850 1.8407 2.8753 42 1 3.8168 4.6454 -0.0076 43 1 5.6717 4.3707 1.2177 44 1 7.0881 3.8132 0.2950 45 1 5.6850 4.5007 -0.5575 46 1 4.4444 -0.2148 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162902689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:27 Heat of formation + Delta-G solvation = -80.225684 kcal Electronic energy + Delta-G solvation = -30402.132094 eV Core-core repulsion = 26259.906763 eV Total energy + Delta-G solvation = -4142.225332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97381 -39.33523 -39.07806 -37.30410 -37.12795 -35.87424 -34.53993 -32.52174 -30.37639 -29.80146 -28.47050 -27.91060 -26.93599 -26.28736 -23.79141 -22.24129 -22.16589 -21.78991 -20.72905 -19.54201 -18.64138 -17.76165 -17.18036 -16.86950 -16.64120 -16.32048 -16.17551 -15.78242 -15.58693 -15.16871 -14.92487 -14.72495 -14.38484 -14.03238 -13.84315 -13.48402 -13.38933 -12.84653 -12.61698 -12.41843 -12.33196 -12.06542 -11.80034 -11.70048 -11.61787 -11.57649 -11.45802 -11.21103 -11.04278 -10.74010 -10.70716 -10.53117 -10.20766 -10.02066 -9.65537 -9.52952 -9.24805 -8.60194 -8.30125 -8.26167 -7.86062 -6.09851 -4.07568 0.88398 1.27223 2.68505 3.05188 3.26269 3.31874 3.34295 3.47969 3.61202 3.62935 4.07157 4.12164 4.37542 4.64086 4.84942 4.93616 4.99508 5.01997 5.04562 5.06143 5.12851 5.17649 5.22329 5.27047 5.30067 5.35956 5.45380 5.55243 5.62217 5.75434 5.75641 5.79524 5.93861 6.04766 6.20100 6.24975 6.28940 6.39560 6.52680 6.64091 6.85796 7.02960 7.12042 7.22161 7.57413 7.70458 8.07967 8.43331 8.76864 8.94309 9.50257 11.03389 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.004243 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.904302 B = 6597.894564 C = 8172.623965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.304 6.304 3 C 0.137 3.863 4 C -0.203 4.203 5 C -0.041 4.041 6 C 0.549 3.451 7 O -0.525 6.525 8 N -0.580 5.580 9 C 0.217 3.783 10 C -0.519 4.519 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.872 3.128 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.139 3.861 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.196 4.196 22 C -0.188 4.188 23 C 0.134 3.866 24 O -0.305 6.305 25 C 0.023 3.977 26 C 0.049 3.951 27 O -0.473 6.473 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.152 0.848 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.141 0.859 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 -13.164 6.801 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.216 6.216 3 C 0.091 3.909 4 C -0.222 4.222 5 C -0.044 4.044 6 C 0.335 3.665 7 O -0.402 6.402 8 N -0.310 5.310 9 C 0.096 3.904 10 C -0.557 4.557 11 H 0.095 0.905 12 C -0.129 4.129 13 N -0.536 5.536 14 Si 0.699 3.301 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.192 1.192 18 C 0.015 3.985 19 C -0.178 4.178 20 C -0.190 4.190 21 C -0.234 4.234 22 C -0.208 4.208 23 C 0.088 3.912 24 O -0.218 6.218 25 C -0.072 4.072 26 C 0.003 3.997 27 O -0.281 6.281 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.169 0.831 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.158 0.842 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 12.100 -12.851 6.897 18.951 hybrid contribution -0.388 1.251 -0.259 1.335 sum 11.712 -11.600 6.639 17.771 Atomic orbital electron populations 1.23385 0.77835 1.04236 1.02588 1.86098 1.21672 1.25513 1.88358 1.18811 0.90689 0.84999 0.96403 1.21602 1.01611 0.90444 1.08540 1.19726 0.93290 0.93745 0.97650 1.18088 0.80733 0.85599 0.82090 1.90802 1.69620 1.45928 1.33815 1.47853 1.31125 1.18399 1.33592 1.19736 0.92094 0.80929 0.97595 1.21237 1.08874 1.00784 1.24804 0.90523 1.24815 0.94894 0.98244 0.94912 1.69883 1.16140 1.31793 1.35781 0.86924 0.77795 0.84644 0.80743 1.19996 1.21122 1.19159 1.21182 0.96140 0.89580 0.91568 1.22737 0.96785 0.99558 0.98709 1.22871 0.94907 0.98733 1.02485 1.23082 1.05688 0.92773 1.01814 1.21030 0.93067 0.97833 1.08826 1.18775 0.83057 0.92476 0.96882 1.86109 1.16623 1.31044 1.87990 1.23153 0.99051 0.83126 1.01850 1.16809 0.86333 0.84538 1.12049 1.84882 1.71228 1.38171 1.33842 0.91144 0.92420 0.88098 0.83098 0.94609 0.95070 0.92640 0.90439 0.90600 0.87495 0.88878 0.88696 0.89077 0.88997 0.84176 0.92351 0.88040 0.92119 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.88 10.27 -34.51 -0.35 -4.24 16 3 C 0.14 1.92 6.68 -39.22 -0.26 1.66 16 4 C -0.20 -3.01 6.65 -39.04 -0.26 -3.27 16 5 C -0.04 -0.68 4.74 -104.98 -0.50 -1.17 16 6 C 0.55 11.29 7.17 -12.43 -0.09 11.20 16 7 O -0.52 -12.93 16.68 5.29 0.09 -12.84 16 8 N -0.58 -11.61 2.46 -176.25 -0.43 -12.05 16 9 C 0.22 5.10 4.24 -5.19 -0.02 5.08 16 10 C -0.52 -14.20 9.66 -34.44 -0.33 -14.54 16 11 H 0.08 2.29 8.02 -52.49 -0.42 1.87 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 14 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 18 C 0.14 2.18 5.22 -4.04 -0.02 2.16 16 19 C -0.16 -2.39 3.98 -90.62 -0.36 -2.75 16 20 C -0.15 -2.22 10.18 -26.69 -0.27 -2.49 16 21 C -0.20 -2.24 8.39 -26.70 -0.22 -2.46 16 22 C -0.19 -2.79 8.77 -39.04 -0.34 -3.13 16 23 C 0.13 1.87 6.68 -39.21 -0.26 1.60 16 24 O -0.30 -3.81 10.27 -34.49 -0.35 -4.16 16 25 C 0.02 0.21 9.86 101.05 1.00 1.20 16 26 C 0.05 0.69 6.73 -38.84 -0.26 0.43 16 27 O -0.47 -6.04 13.04 -44.80 -0.58 -6.63 16 28 H 0.07 0.67 4.74 -51.93 -0.25 0.43 16 29 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.15 2.18 2.90 -52.49 -0.15 2.03 16 32 H 0.04 0.90 6.92 -51.93 -0.36 0.54 16 33 H 0.03 0.70 6.99 -51.93 -0.36 0.34 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.08 5.68 -51.93 -0.30 0.79 16 36 H 0.08 1.11 7.72 -51.93 -0.40 0.71 16 37 H 0.11 1.83 7.02 -51.93 -0.36 1.47 16 38 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.09 0.90 7.46 -51.93 -0.39 0.51 16 41 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 42 H 0.14 1.95 6.26 -52.49 -0.33 1.62 16 43 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.53 7.20 -51.93 -0.37 0.16 16 46 H 0.38 3.22 9.06 45.56 0.41 3.64 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -34.77 373.77 -6.59 -41.36 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.37 Total: 6.05 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.32 Total: -3.35 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.34 Total: -38.20 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.20 Total: -27.87 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.77 -6.59 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162902689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.867 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds