Wall clock time and date at job start Tue Mar 31 2020 19:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36008 * 117.00023 * 2 1 4 4 C 1.38230 * 119.97056 * 355.36695 * 3 2 1 5 5 C 1.39698 * 119.94157 * 179.97438 * 4 3 2 6 6 C 1.47618 * 120.05678 * 180.02562 * 5 4 3 7 7 O 1.21583 * 120.00189 * 233.05283 * 6 5 4 8 8 N 1.34776 * 119.99776 * 53.05283 * 6 5 4 9 9 C 1.46504 * 120.00020 * 176.28405 * 8 6 5 10 10 C 1.50698 * 109.46935 * 89.99929 * 9 8 6 11 11 H 1.08001 * 120.00587 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99676 * 179.72856 * 10 9 8 13 13 N 1.31515 * 120.00283 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00078 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.46621 * 90.00549 * 14 12 10 16 16 H 1.48502 * 109.47480 * 210.00443 * 14 12 10 17 17 H 1.48504 * 109.47140 * 330.00826 * 14 12 10 18 18 C 1.46501 * 120.00010 * 356.27879 * 8 6 5 19 19 C 1.53008 * 109.47221 * 264.17554 * 18 8 6 20 20 C 1.53000 * 117.49534 * 245.49850 * 19 18 8 21 21 C 1.52994 * 117.49830 * 176.83984 * 19 18 8 22 22 C 1.39698 * 119.89030 * 0.28373 * 5 4 3 23 23 C 1.38233 * 119.94344 * 359.46351 * 22 5 4 24 24 O 1.36003 * 119.97554 * 180.25522 * 23 22 5 25 25 C 1.42900 * 116.99854 * 5.01272 * 24 23 22 26 26 C 1.39228 * 119.97145 * 175.39857 * 3 2 1 27 27 O 1.35895 * 119.94464 * 0.02562 * 26 3 2 28 28 H 1.09005 * 109.46989 * 303.72294 * 1 2 3 29 29 H 1.09001 * 109.47564 * 63.71687 * 1 2 3 30 30 H 1.08999 * 109.47150 * 183.71979 * 1 2 3 31 31 H 1.08000 * 120.02743 * 0.03176 * 4 3 2 32 32 H 1.08995 * 109.46872 * 329.99662 * 9 8 6 33 33 H 1.08999 * 109.46720 * 209.99573 * 9 8 6 34 34 H 0.97002 * 120.00419 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.47434 * 24.17301 * 18 8 6 36 36 H 1.09002 * 109.47291 * 144.17681 * 18 8 6 37 37 H 1.09000 * 115.54720 * 31.17169 * 19 18 8 38 38 H 1.08992 * 117.50239 * 0.02562 * 20 19 18 39 39 H 1.08999 * 117.48953 * 145.02251 * 20 19 18 40 40 H 1.09001 * 117.50044 * 214.98084 * 21 19 18 41 41 H 1.09007 * 117.49850 * 0.02562 * 21 19 18 42 42 H 1.07999 * 120.03104 * 179.72126 * 22 5 4 43 43 H 1.09001 * 109.47127 * 63.78107 * 25 24 23 44 44 H 1.09003 * 109.46833 * 183.77725 * 25 24 23 45 45 H 1.08995 * 109.47224 * 303.77698 * 25 24 23 46 46 H 0.96692 * 114.00250 * 90.00314 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2965 2.3690 -0.0967 5 6 1.9313 3.6134 -0.0961 6 6 1.1328 4.8507 -0.1987 7 8 1.3949 5.6742 -1.0540 8 7 0.1133 5.0676 0.6557 9 6 -0.6271 6.3308 0.6070 10 6 -1.7865 6.1971 -0.3463 11 1 -1.9548 5.2646 -0.8646 12 6 -2.6355 7.2636 -0.5532 13 7 -3.6470 7.1471 -1.3856 14 14 -2.3489 8.8741 0.3489 15 1 -1.4601 9.7443 -0.4623 16 1 -3.6489 9.5586 0.5650 17 1 -1.7098 8.5996 1.6609 18 6 -0.2546 4.0401 1.6330 19 6 -1.4040 3.1964 1.0778 20 6 -2.7502 3.2737 1.8008 21 6 -1.8862 2.0160 1.9233 22 6 3.3234 3.6847 -0.0037 23 6 4.0685 2.5248 0.0981 24 8 5.4234 2.5937 0.1933 25 6 6.0013 3.8969 0.2930 26 6 3.4334 1.2858 0.0968 27 8 4.1685 0.1467 0.1906 28 1 -0.3633 0.5706 0.8548 29 1 -0.3634 0.4550 -0.9214 30 1 -0.3633 -1.0255 0.0667 31 1 0.2207 2.3110 -0.1718 32 1 0.0344 7.1267 0.2652 33 1 -1.0010 6.5713 1.6023 34 1 -4.2445 7.8974 -1.5308 35 1 0.6054 3.3992 1.8276 36 1 -0.5695 4.5174 2.5610 37 1 -1.4205 3.0793 -0.0057 38 1 -2.8171 3.9258 2.6715 39 1 -3.6524 3.2070 1.1928 40 1 -2.2205 1.1225 1.3960 41 1 -1.3850 1.8407 2.8753 42 1 3.8168 4.6454 -0.0076 43 1 5.6717 4.3707 1.2177 44 1 7.0881 3.8132 0.2950 45 1 5.6850 4.5007 -0.5575 46 1 4.4444 -0.2148 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162902689.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:26 Heat of formation + Delta-G solvation = -104.660376 kcal Electronic energy + Delta-G solvation = -30403.191662 eV Core-core repulsion = 26259.906763 eV Total energy + Delta-G solvation = -4143.284900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11483 -40.73640 -40.06500 -38.50094 -38.16741 -37.04627 -36.16297 -34.57643 -31.68791 -30.88164 -30.09323 -28.78789 -28.00037 -27.56255 -25.32205 -23.67050 -23.21811 -22.98315 -22.00006 -20.81614 -19.77498 -19.11118 -18.88700 -18.25612 -17.68766 -17.52324 -17.29763 -17.17464 -16.52418 -16.46466 -16.23111 -16.04571 -15.55751 -15.42545 -14.99994 -14.85609 -14.65794 -14.41781 -13.98411 -13.81901 -13.63008 -13.38027 -13.19646 -13.07741 -12.69241 -12.60632 -12.53263 -12.47881 -12.45553 -12.23797 -11.98646 -11.74570 -11.71043 -11.65685 -11.19448 -10.94143 -10.80832 -10.69516 -9.59053 -9.35186 -9.33620 -8.28628 -6.31343 -0.29455 0.17742 1.33177 1.36899 1.44133 1.57740 1.76793 2.09969 2.33063 2.38030 2.63684 2.94380 3.04804 3.08880 3.37192 3.80371 3.85670 3.89743 3.93828 4.07696 4.16884 4.25025 4.36061 4.38294 4.40812 4.41272 4.48693 4.55533 4.63798 4.71558 4.73123 4.76877 4.81072 4.85865 4.92014 4.95511 5.11596 5.13326 5.15039 5.29086 5.33637 5.46676 5.56980 6.10364 6.15604 6.27062 6.50709 6.69273 6.82896 7.13154 7.32441 8.87879 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.004243 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.904302 B = 6597.894564 C = 8172.623965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.307 6.307 3 C 0.141 3.859 4 C -0.200 4.200 5 C -0.058 4.058 6 C 0.546 3.454 7 O -0.579 6.579 8 N -0.582 5.582 9 C 0.224 3.776 10 C -0.515 4.515 11 H 0.035 0.965 12 C 0.014 3.986 13 N -0.945 5.945 14 Si 0.938 3.062 15 H -0.279 1.279 16 H -0.279 1.279 17 H -0.238 1.238 18 C 0.138 3.862 19 C -0.179 4.179 20 C -0.174 4.174 21 C -0.150 4.150 22 C -0.187 4.187 23 C 0.138 3.862 24 O -0.311 6.311 25 C 0.014 3.986 26 C 0.053 3.947 27 O -0.479 6.479 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.131 0.869 31 H 0.152 0.848 32 H 0.020 0.980 33 H 0.052 0.948 34 H 0.265 0.735 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.144 0.856 43 H 0.064 0.936 44 H 0.130 0.870 45 H 0.059 0.941 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.529 -14.665 9.228 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.220 6.220 3 C 0.094 3.906 4 C -0.219 4.219 5 C -0.061 4.061 6 C 0.334 3.666 7 O -0.460 6.460 8 N -0.311 5.311 9 C 0.102 3.898 10 C -0.554 4.554 11 H 0.053 0.947 12 C -0.183 4.183 13 N -0.586 5.586 14 Si 0.761 3.239 15 H -0.205 1.205 16 H -0.204 1.204 17 H -0.161 1.161 18 C 0.015 3.985 19 C -0.198 4.198 20 C -0.211 4.211 21 C -0.187 4.187 22 C -0.207 4.207 23 C 0.091 3.909 24 O -0.224 6.224 25 C -0.080 4.080 26 C 0.007 3.993 27 O -0.290 6.290 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.169 0.831 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.162 0.838 43 H 0.083 0.917 44 H 0.148 0.852 45 H 0.078 0.922 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 13.650 -14.406 9.357 21.941 hybrid contribution -0.820 1.561 -1.085 2.070 sum 12.830 -12.846 8.273 19.951 Atomic orbital electron populations 1.23643 0.76326 1.06247 1.02511 1.86109 1.23193 1.24645 1.88057 1.18774 0.90795 0.85063 0.96004 1.21521 1.01683 0.90135 1.08555 1.19373 0.93608 0.92397 1.00724 1.18699 0.80638 0.86256 0.80995 1.90754 1.71148 1.48156 1.35954 1.47890 1.30572 1.18303 1.34287 1.19448 0.90581 0.82519 0.97248 1.21388 1.10005 0.99149 1.24865 0.94657 1.25709 0.94543 1.02211 0.95874 1.70037 1.17528 1.33119 1.37888 0.85864 0.77942 0.79501 0.80550 1.20474 1.20401 1.16120 1.21451 0.97203 0.88946 0.90859 1.22556 0.96947 1.02706 0.97581 1.22885 0.94074 1.01694 1.02415 1.23201 1.02049 0.91658 1.01765 1.21047 0.92338 0.98636 1.08657 1.18746 0.83749 0.92012 0.96343 1.86113 1.15591 1.33004 1.87653 1.23451 1.00573 0.81815 1.02143 1.16920 0.86518 0.84996 1.10917 1.84819 1.70989 1.37624 1.35591 0.90737 0.92941 0.85115 0.83110 0.96213 0.92978 0.92555 0.88313 0.89143 0.90479 0.88499 0.90681 0.87062 0.86338 0.83790 0.91714 0.85155 0.92215 0.74093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.31 -7.11 10.27 -79.55 -0.82 -7.93 16 3 C 0.14 3.68 6.68 22.51 0.15 3.83 16 4 C -0.20 -5.79 6.65 22.62 0.15 -5.64 16 5 C -0.06 -1.92 4.74 -20.10 -0.10 -2.02 16 6 C 0.55 23.11 7.17 86.72 0.62 23.74 16 7 O -0.58 -29.88 16.68 -3.98 -0.07 -29.95 16 8 N -0.58 -23.64 2.46 -829.80 -2.05 -25.69 16 9 C 0.22 10.66 4.24 85.63 0.36 11.02 16 10 C -0.52 -29.32 9.66 25.60 0.25 -29.07 16 11 H 0.04 2.25 8.02 -2.91 -0.02 2.22 16 12 C 0.01 0.83 5.47 84.65 0.46 1.29 16 13 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 14 Si 0.94 43.72 27.47 68.60 1.88 45.60 16 15 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.24 -9.90 6.53 99.48 0.65 -9.25 16 18 C 0.14 4.18 5.22 86.38 0.45 4.63 16 19 C -0.18 -5.32 3.98 -10.79 -0.04 -5.36 16 20 C -0.17 -4.95 10.18 30.62 0.31 -4.64 16 21 C -0.15 -3.02 8.39 30.62 0.26 -2.76 16 22 C -0.19 -5.44 8.77 22.62 0.20 -5.24 16 23 C 0.14 3.62 6.68 22.51 0.15 3.77 16 24 O -0.31 -7.11 10.27 -79.49 -0.82 -7.93 16 25 C 0.01 0.23 9.86 113.37 1.12 1.34 16 26 C 0.05 1.38 6.73 22.75 0.15 1.54 16 27 O -0.48 -10.96 13.04 -68.09 -0.89 -11.85 16 28 H 0.07 1.21 4.74 -2.38 -0.01 1.20 16 29 H 0.05 0.97 7.67 -2.39 -0.02 0.95 16 30 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.15 4.35 2.90 -2.91 -0.01 4.34 16 32 H 0.02 1.01 6.92 -2.39 -0.02 1.00 16 33 H 0.05 2.27 6.99 -2.39 -0.02 2.25 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.10 2.58 5.68 -2.39 -0.01 2.57 16 36 H 0.09 2.47 7.72 -2.39 -0.02 2.45 16 37 H 0.08 2.78 7.02 -2.39 -0.02 2.76 16 38 H 0.10 2.65 8.04 -2.39 -0.02 2.63 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.11 1.83 7.46 -2.39 -0.02 1.81 16 41 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.14 3.97 6.26 -2.91 -0.02 3.95 16 43 H 0.06 0.96 8.06 -2.39 -0.02 0.94 16 44 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 0.97 7.20 -2.39 -0.02 0.95 16 46 H 0.40 5.70 9.06 -74.06 -0.67 5.03 16 Total: -1.00 -78.99 373.77 3.47 -75.52 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.31 Total: 23.10 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.61 Total: -2.35 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.75 Total: -84.23 kcal Atomic # 8 Polarization: -55.07 SS G_CDS: -2.59 Total: -57.65 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -78.99 3.47 -75.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162902689.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.137 kcal (2) G-P(sol) polarization free energy of solvation -78.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds