Wall clock time and date at job start Tue Mar 31 2020 19:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 114.00033 * 2 1 4 4 C 1.52991 * 109.47524 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.55326 * 54.87483 * 4 3 2 6 6 C 1.53301 * 109.51260 * 174.99843 * 4 3 2 7 7 N 1.47154 * 108.38323 * 172.22545 * 6 4 3 8 8 C 1.34771 * 120.98015 * 129.44598 * 7 6 4 9 9 O 1.21275 * 120.00237 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.99866 * 179.97438 * 8 7 6 11 11 C 1.50707 * 109.46992 * 179.97438 * 10 8 7 12 12 C 1.38301 * 119.92868 * 90.00249 * 11 10 8 13 13 C 1.38096 * 120.06406 * 179.97438 * 12 11 10 14 14 C 1.38881 * 119.93523 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.06804 * 179.97438 * 14 13 12 16 16 C 1.34824 * 117.00276 * 5.53620 * 15 14 13 17 17 H 1.08005 * 119.99819 * 354.94472 * 16 15 14 18 18 C 1.38651 * 120.00108 * 174.94196 * 16 15 14 19 19 N 1.31554 * 119.99870 * 359.72701 * 18 16 15 20 20 Si 1.86801 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46970 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47285 * 119.99834 * 20 18 16 23 23 H 1.48494 * 109.47354 * 240.00276 * 20 18 16 24 24 C 1.38877 * 119.86094 * 0.26449 * 14 13 12 25 25 C 1.38106 * 119.92818 * 359.48434 * 24 14 13 26 26 C 1.47153 * 118.03669 * 309.71654 * 7 6 4 27 27 C 1.52876 * 108.60670 * 50.22781 * 26 7 6 28 28 O 1.42961 * 109.30140 * 307.93336 * 27 26 7 29 29 H 1.09006 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47250 * 299.99672 * 1 2 3 31 31 H 1.09000 * 109.47719 * 60.00615 * 1 2 3 32 32 H 1.09007 * 109.47078 * 59.99404 * 3 2 1 33 33 H 1.09001 * 109.46701 * 300.00428 * 3 2 1 34 34 H 1.09004 * 109.67636 * 52.50656 * 6 4 3 35 35 H 1.08993 * 109.68381 * 291.95298 * 6 4 3 36 36 H 1.08999 * 109.47198 * 59.99684 * 10 8 7 37 37 H 1.08998 * 109.46845 * 299.99740 * 10 8 7 38 38 H 1.08000 * 119.96681 * 359.97438 * 12 11 10 39 39 H 1.08008 * 120.03430 * 180.02562 * 13 12 11 40 40 H 0.97002 * 120.00204 * 180.02562 * 19 18 16 41 41 H 1.07992 * 120.03738 * 179.72344 * 24 14 13 42 42 H 1.08001 * 119.96609 * 180.28106 * 25 24 14 43 43 H 1.09003 * 109.68431 * 170.00500 * 26 7 6 44 44 H 1.09001 * 109.68625 * 290.56289 * 26 7 6 45 45 H 1.09005 * 109.58548 * 187.92133 * 27 26 7 46 46 H 1.08998 * 109.41222 * 67.84060 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.8527 0.5667 -0.8392 6 6 4.1594 2.5793 -0.1253 7 7 5.6132 2.4561 0.0656 8 6 6.4771 2.9962 -0.8167 9 8 6.0596 3.5941 -1.7857 10 6 7.9618 2.8572 -0.5991 11 6 8.7001 3.5434 -1.7195 12 6 9.0418 4.8786 -1.6047 13 6 9.7188 5.5101 -2.6293 14 6 10.0570 4.8029 -3.7758 15 8 10.7220 5.4211 -4.7849 16 6 11.1256 6.6887 -4.5659 17 1 10.8456 7.1946 -3.6536 18 6 11.9002 7.3429 -5.5117 19 7 12.2457 6.7249 -6.6204 20 14 12.4600 9.0990 -5.2079 21 1 11.9480 9.5612 -3.8928 22 1 13.9440 9.1523 -5.2072 23 1 11.9335 9.9792 -6.2817 24 6 9.7080 3.4635 -3.8901 25 6 9.0356 2.8363 -2.8597 26 6 6.0961 1.7206 1.2452 27 6 5.3777 0.3726 1.3072 28 8 3.9664 0.5850 1.2247 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6884 1.8465 0.8900 33 1 1.6884 1.8464 -0.8900 34 1 3.7434 3.2378 0.6373 35 1 3.9522 2.9862 -1.1150 36 1 8.2291 1.8006 -0.5818 37 1 8.2343 3.3165 0.3510 38 1 8.7789 5.4280 -0.7127 39 1 9.9858 6.5527 -2.5390 40 1 12.7879 7.1824 -7.2819 41 1 9.9656 2.9121 -4.7822 42 1 8.7680 1.7935 -2.9461 43 1 7.1709 1.5590 1.1625 44 1 5.8785 2.2912 2.1481 45 1 5.6165 -0.1259 2.2467 46 1 5.7016 -0.2492 0.4726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172633854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:01 Heat of formation + Delta-G solvation = -116.688137 kcal Electronic energy + Delta-G solvation = -28193.030030 eV Core-core repulsion = 24049.223568 eV Total energy + Delta-G solvation = -4143.806462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62775 -39.20222 -38.57750 -37.78924 -36.47070 -34.89400 -32.99378 -32.38451 -31.28085 -30.12948 -28.96423 -27.79413 -26.56873 -25.47423 -24.74487 -23.65293 -21.95197 -21.83092 -20.70936 -19.22599 -17.96038 -17.41005 -17.30747 -16.98072 -16.87991 -16.12837 -15.85172 -15.65318 -15.47345 -15.08758 -14.57301 -14.53415 -14.43863 -14.24528 -13.70521 -13.61281 -13.42086 -13.33679 -12.84892 -12.71570 -12.63321 -12.43672 -12.08708 -11.96766 -11.85372 -11.51396 -11.47467 -11.25892 -11.03780 -10.83716 -10.72787 -10.58753 -10.45195 -10.40318 -10.08750 -9.74621 -9.30040 -8.80706 -8.79310 -8.12791 -7.14326 -6.42677 -4.01146 2.22965 2.27594 2.63263 2.72546 3.13989 3.15157 3.20860 3.21829 3.39985 3.98713 4.37326 4.39432 4.52954 4.60909 4.64513 4.78563 4.78944 4.90950 4.93575 4.99112 5.04163 5.08222 5.12547 5.18417 5.23821 5.26281 5.29638 5.32606 5.36916 5.46190 5.57509 5.64321 5.74457 5.86418 6.15142 6.24240 6.44035 6.68797 6.72099 6.78283 6.93341 7.07285 7.19237 7.26900 7.39045 7.47394 7.86108 8.02775 8.17456 9.03125 9.73934 10.75519 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.001948 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.771047 B =14367.420013 C =14647.084439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.071 3.929 4 C 0.080 3.920 5 H 0.073 0.927 6 C 0.086 3.914 7 N -0.625 5.625 8 C 0.515 3.485 9 O -0.516 6.516 10 C -0.077 4.077 11 C -0.172 4.172 12 C -0.056 4.056 13 C -0.232 4.232 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.191 4.191 25 C -0.059 4.059 26 C 0.072 3.928 27 C 0.047 3.953 28 O -0.369 6.369 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -12.256 18.277 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.091 0.909 6 C -0.037 4.037 7 N -0.362 5.362 8 C 0.304 3.696 9 O -0.389 6.389 10 C -0.117 4.117 11 C -0.173 4.173 12 C -0.074 4.074 13 C -0.252 4.252 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.211 4.211 25 C -0.078 4.078 26 C -0.051 4.051 27 C -0.031 4.031 28 O -0.287 6.287 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.327 -12.134 17.425 27.406 hybrid contribution 0.187 1.203 0.086 1.220 sum -17.140 -10.931 17.511 26.831 Atomic orbital electron populations 1.22762 0.80807 1.02934 1.00041 1.87930 1.19764 1.27105 1.95425 1.22447 0.91177 0.85616 1.01379 1.22447 0.93156 0.93837 0.88400 0.90926 1.22070 0.80833 0.96315 1.04482 1.48212 1.05792 1.56632 1.25611 1.21146 0.89040 0.77828 0.81619 1.90740 1.79247 1.40302 1.28619 1.20431 0.89716 1.02042 0.99501 1.18625 1.07372 0.94844 0.96498 1.20499 0.96193 0.93298 0.97431 1.21106 1.07380 1.01136 0.95536 1.19388 0.90914 0.91670 0.87683 1.83976 1.62434 1.27883 1.33863 1.21379 1.32359 0.86642 1.06293 0.89023 1.25291 0.96151 1.00155 0.94994 1.70050 1.34771 1.37201 1.07775 0.85643 0.78611 0.80430 0.78715 1.19117 1.20159 1.20164 1.20152 1.07344 0.92930 1.00633 1.20389 0.96706 0.98159 0.92499 1.22382 1.00434 0.93559 0.88770 1.22922 0.81356 0.95547 1.03234 1.88011 1.22082 1.81479 1.37169 0.89495 0.93961 0.93971 0.92091 0.91303 0.90723 0.87798 0.88954 0.88914 0.87853 0.85562 0.92104 0.86522 0.87429 0.88272 0.90462 0.87403 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.75 10.67 -39.70 -0.42 -4.17 16 3 C 0.07 0.58 5.60 37.15 0.21 0.79 16 4 C 0.08 0.76 3.06 -26.58 -0.08 0.67 16 5 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 6 C 0.09 0.86 5.93 -3.53 -0.02 0.84 16 7 N -0.63 -6.68 3.03 -172.53 -0.52 -7.20 16 8 C 0.51 7.22 7.70 -10.99 -0.08 7.13 16 9 O -0.52 -9.67 15.50 5.56 0.09 -9.58 16 10 C -0.08 -0.96 4.20 -29.03 -0.12 -1.09 16 11 C -0.17 -3.01 4.38 -104.57 -0.46 -3.47 16 12 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 13 C -0.23 -5.25 9.17 -39.40 -0.36 -5.61 16 14 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 15 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 16 C -0.39 -11.13 9.49 30.88 0.29 -10.84 16 17 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 20 Si 0.94 20.84 29.55 -169.99 -5.02 15.81 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 C -0.19 -4.21 9.99 -39.39 -0.39 -4.61 16 25 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 26 C 0.07 0.52 6.51 -3.75 -0.02 0.49 16 27 C 0.05 0.33 6.97 37.09 0.26 0.59 16 28 O -0.37 -3.63 10.35 -39.70 -0.41 -4.04 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.17 7.08 -51.93 -0.37 0.80 16 36 H 0.09 0.91 7.59 -51.93 -0.39 0.52 16 37 H 0.09 0.94 7.97 -51.93 -0.41 0.53 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 43 H 0.10 0.54 6.05 -51.93 -0.31 0.23 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -36.04 382.83 -7.25 -43.29 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.69 Total: 2.32 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.80 Total: -12.08 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.24 Total: -32.11 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.75 Total: -23.01 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.04 -7.25 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172633854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.395 kcal (2) G-P(sol) polarization free energy of solvation -36.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds