Wall clock time and date at job start Tue Mar 31 2020 19:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 114.00033 * 2 1 4 4 C 1.52991 * 109.47524 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.55326 * 54.87483 * 4 3 2 6 6 C 1.53301 * 109.51260 * 174.99843 * 4 3 2 7 7 N 1.47154 * 108.38323 * 172.22545 * 6 4 3 8 8 C 1.34771 * 120.98015 * 129.44598 * 7 6 4 9 9 O 1.21275 * 120.00237 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.99866 * 179.97438 * 8 7 6 11 11 C 1.50707 * 109.46992 * 179.97438 * 10 8 7 12 12 C 1.38301 * 119.92868 * 90.00249 * 11 10 8 13 13 C 1.38096 * 120.06406 * 179.97438 * 12 11 10 14 14 C 1.38881 * 119.93523 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.06804 * 179.97438 * 14 13 12 16 16 C 1.34824 * 117.00276 * 5.53620 * 15 14 13 17 17 H 1.08005 * 119.99819 * 354.94472 * 16 15 14 18 18 C 1.38651 * 120.00108 * 174.94196 * 16 15 14 19 19 N 1.31554 * 119.99870 * 359.72701 * 18 16 15 20 20 Si 1.86801 * 120.00280 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46970 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47285 * 119.99834 * 20 18 16 23 23 H 1.48494 * 109.47354 * 240.00276 * 20 18 16 24 24 C 1.38877 * 119.86094 * 0.26449 * 14 13 12 25 25 C 1.38106 * 119.92818 * 359.48434 * 24 14 13 26 26 C 1.47153 * 118.03669 * 309.71654 * 7 6 4 27 27 C 1.52876 * 108.60670 * 50.22781 * 26 7 6 28 28 O 1.42961 * 109.30140 * 307.93336 * 27 26 7 29 29 H 1.09006 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47250 * 299.99672 * 1 2 3 31 31 H 1.09000 * 109.47719 * 60.00615 * 1 2 3 32 32 H 1.09007 * 109.47078 * 59.99404 * 3 2 1 33 33 H 1.09001 * 109.46701 * 300.00428 * 3 2 1 34 34 H 1.09004 * 109.67636 * 52.50656 * 6 4 3 35 35 H 1.08993 * 109.68381 * 291.95298 * 6 4 3 36 36 H 1.08999 * 109.47198 * 59.99684 * 10 8 7 37 37 H 1.08998 * 109.46845 * 299.99740 * 10 8 7 38 38 H 1.08000 * 119.96681 * 359.97438 * 12 11 10 39 39 H 1.08008 * 120.03430 * 180.02562 * 13 12 11 40 40 H 0.97002 * 120.00204 * 180.02562 * 19 18 16 41 41 H 1.07992 * 120.03738 * 179.72344 * 24 14 13 42 42 H 1.08001 * 119.96609 * 180.28106 * 25 24 14 43 43 H 1.09003 * 109.68431 * 170.00500 * 26 7 6 44 44 H 1.09001 * 109.68625 * 290.56289 * 26 7 6 45 45 H 1.09005 * 109.58548 * 187.92133 * 27 26 7 46 46 H 1.08998 * 109.41222 * 67.84060 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.8527 0.5667 -0.8392 6 6 4.1594 2.5793 -0.1253 7 7 5.6132 2.4561 0.0656 8 6 6.4771 2.9962 -0.8167 9 8 6.0596 3.5941 -1.7857 10 6 7.9618 2.8572 -0.5991 11 6 8.7001 3.5434 -1.7195 12 6 9.0418 4.8786 -1.6047 13 6 9.7188 5.5101 -2.6293 14 6 10.0570 4.8029 -3.7758 15 8 10.7220 5.4211 -4.7849 16 6 11.1256 6.6887 -4.5659 17 1 10.8456 7.1946 -3.6536 18 6 11.9002 7.3429 -5.5117 19 7 12.2457 6.7249 -6.6204 20 14 12.4600 9.0990 -5.2079 21 1 11.9480 9.5612 -3.8928 22 1 13.9440 9.1523 -5.2072 23 1 11.9335 9.9792 -6.2817 24 6 9.7080 3.4635 -3.8901 25 6 9.0356 2.8363 -2.8597 26 6 6.0961 1.7206 1.2452 27 6 5.3777 0.3726 1.3072 28 8 3.9664 0.5850 1.2247 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6884 1.8465 0.8900 33 1 1.6884 1.8464 -0.8900 34 1 3.7434 3.2378 0.6373 35 1 3.9522 2.9862 -1.1150 36 1 8.2291 1.8006 -0.5818 37 1 8.2343 3.3165 0.3510 38 1 8.7789 5.4280 -0.7127 39 1 9.9858 6.5527 -2.5390 40 1 12.7879 7.1824 -7.2819 41 1 9.9656 2.9121 -4.7822 42 1 8.7680 1.7935 -2.9461 43 1 7.1709 1.5590 1.1625 44 1 5.8785 2.2912 2.1481 45 1 5.6165 -0.1259 2.2467 46 1 5.7016 -0.2492 0.4726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172633854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:00 Heat of formation + Delta-G solvation = -142.420138 kcal Electronic energy + Delta-G solvation = -28194.145854 eV Core-core repulsion = 24049.223568 eV Total energy + Delta-G solvation = -4144.922286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54402 -40.71857 -39.69409 -38.51758 -38.12251 -35.78578 -34.42082 -33.67010 -32.64556 -31.78412 -29.63741 -28.86181 -27.69022 -26.99430 -25.81015 -24.30472 -23.64457 -22.81173 -22.04139 -20.19660 -19.83657 -18.84267 -18.33298 -17.97734 -17.58515 -16.94363 -16.79015 -16.52924 -16.31856 -16.23371 -16.02497 -15.84948 -15.65891 -15.51587 -15.13310 -15.03393 -14.55059 -14.37682 -14.37184 -14.05431 -13.60467 -13.43666 -13.19741 -12.99949 -12.84461 -12.71546 -12.54984 -12.44520 -12.27777 -12.22471 -12.09187 -12.04669 -11.72868 -11.21282 -11.18280 -10.90931 -10.73535 -10.67785 -9.77140 -9.62155 -8.90938 -8.47818 -6.16022 0.60826 0.65486 1.33865 1.42274 1.52694 1.61286 1.83382 2.17198 2.62126 2.78284 2.83092 3.14849 3.51056 3.67197 3.74188 3.87517 3.91649 4.00015 4.03486 4.10327 4.18135 4.24945 4.34147 4.36773 4.44471 4.47335 4.52294 4.55604 4.58807 4.61458 4.65346 4.75927 4.79411 4.84435 4.86722 4.96715 5.07970 5.14305 5.29346 5.35813 5.56115 5.71176 5.76509 6.02574 6.08828 6.18548 6.20335 6.33409 6.96738 7.16438 7.78110 8.75841 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.001948 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.771047 B =14367.420013 C =14647.084439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.070 3.930 4 C 0.087 3.913 5 H 0.056 0.944 6 C 0.086 3.914 7 N -0.619 5.619 8 C 0.514 3.486 9 O -0.576 6.576 10 C -0.076 4.076 11 C -0.146 4.146 12 C -0.059 4.059 13 C -0.244 4.244 14 C 0.113 3.887 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.021 2.979 21 H -0.252 1.252 22 H -0.266 1.266 23 H -0.269 1.269 24 C -0.207 4.207 25 C -0.057 4.057 26 C 0.067 3.933 27 C 0.042 3.958 28 O -0.384 6.384 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.273 0.727 41 H 0.112 0.888 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.135 0.865 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.494 -13.126 22.321 31.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.007 4.007 4 C 0.028 3.972 5 H 0.074 0.926 6 C -0.037 4.037 7 N -0.354 5.354 8 C 0.304 3.696 9 O -0.455 6.455 10 C -0.115 4.115 11 C -0.147 4.147 12 C -0.077 4.077 13 C -0.263 4.263 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.840 3.160 21 H -0.175 1.175 22 H -0.191 1.191 23 H -0.194 1.194 24 C -0.226 4.226 25 C -0.075 4.075 26 C -0.054 4.054 27 C -0.035 4.035 28 O -0.303 6.303 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.111 0.889 45 H 0.153 0.847 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.551 -13.069 21.562 31.303 hybrid contribution 0.305 1.166 -0.899 1.503 sum -18.246 -11.903 20.664 30.026 Atomic orbital electron populations 1.22937 0.79240 1.03887 1.00983 1.87878 1.21602 1.27974 1.95637 1.22509 0.90467 0.85395 1.02359 1.22330 0.93940 0.92972 0.87937 0.92560 1.22085 0.80725 0.96921 1.03956 1.48247 1.05766 1.55571 1.25777 1.21287 0.89811 0.77290 0.81194 1.90743 1.80203 1.43306 1.31211 1.20570 0.87961 1.04186 0.98735 1.19236 1.04227 0.94176 0.97089 1.20927 0.94944 0.94345 0.97497 1.21229 1.08166 1.00960 0.95975 1.19942 0.92265 0.93122 0.88423 1.83937 1.65235 1.28613 1.36292 1.21866 1.32959 0.87105 1.07029 0.88204 1.26625 0.95905 1.05238 0.94435 1.70195 1.36778 1.39691 1.09313 0.84505 0.78368 0.73889 0.79261 1.17503 1.19082 1.19392 1.20437 1.08072 0.92189 1.01895 1.20863 0.95067 0.99974 0.91618 1.22708 1.01873 0.93179 0.87654 1.23156 0.80019 0.95749 1.04589 1.88002 1.23813 1.81474 1.37002 0.88643 0.92941 0.93080 0.91082 0.90324 0.89288 0.89663 0.85046 0.85127 0.84374 0.86485 0.91834 0.87023 0.83657 0.85680 0.88856 0.84719 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.52 10.67 -144.70 -1.54 -9.06 16 3 C 0.07 1.04 5.60 71.98 0.40 1.44 16 4 C 0.09 1.49 3.06 30.69 0.09 1.58 16 5 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 6 C 0.09 1.55 5.93 86.36 0.51 2.06 16 7 N -0.62 -11.03 3.03 -818.15 -2.48 -13.50 16 8 C 0.51 12.64 7.70 87.66 0.68 13.32 16 9 O -0.58 -20.77 15.50 -3.01 -0.05 -20.81 16 10 C -0.08 -1.48 4.20 29.11 0.12 -1.35 16 11 C -0.15 -4.63 4.38 -19.83 -0.09 -4.72 16 12 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 13 C -0.24 -11.24 9.17 22.39 0.21 -11.04 16 14 C 0.11 5.92 6.65 22.58 0.15 6.07 16 15 O -0.23 -14.70 9.76 -22.72 -0.22 -14.92 16 16 C -0.41 -24.95 9.49 67.92 0.64 -24.31 16 17 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 18 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 19 N -0.92 -57.96 13.67 21.61 0.30 -57.67 16 20 Si 1.02 43.99 29.55 68.60 2.03 46.02 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 C -0.21 -9.34 9.99 22.39 0.22 -9.12 16 25 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 26 C 0.07 0.63 6.51 86.21 0.56 1.19 16 27 C 0.04 0.43 6.97 71.94 0.50 0.93 16 28 O -0.38 -6.51 10.35 -144.70 -1.50 -8.01 16 29 H 0.10 0.84 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.08 1.88 7.08 -2.39 -0.02 1.86 16 36 H 0.13 1.67 7.59 -2.39 -0.02 1.65 16 37 H 0.13 1.71 7.97 -2.39 -0.02 1.69 16 38 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 39 H 0.12 5.47 5.64 -2.91 -0.02 5.46 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 42 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.13 0.53 6.05 -2.39 -0.01 0.52 16 44 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -86.34 382.83 3.67 -82.67 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.99 Total: 22.40 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 6.15 Total: -27.12 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -2.18 Total: -71.17 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -3.31 Total: -52.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -86.34 3.67 -82.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172633854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.750 kcal (2) G-P(sol) polarization free energy of solvation -86.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds