Wall clock time and date at job start Tue Mar 31 2020 19:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99823 * 2 1 4 4 C 1.52997 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46978 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.46741 * 180.02562 * 5 4 3 7 7 C 1.35485 * 116.99738 * 179.97438 * 6 5 4 8 8 C 1.39164 * 119.51390 * 179.97438 * 7 6 5 9 9 C 1.36953 * 119.39881 * 179.97438 * 8 7 6 10 10 C 1.40312 * 118.46747 * 0.02562 * 9 8 7 11 11 C 1.47484 * 120.49871 * 179.97438 * 10 9 8 12 12 O 1.21498 * 119.99915 * 353.75534 * 11 10 9 13 13 O 1.34744 * 120.00130 * 173.75570 * 11 10 9 14 14 C 1.45201 * 117.00021 * 177.57623 * 13 11 10 15 15 C 1.52996 * 109.47016 * 177.00664 * 14 13 11 16 16 C 1.50704 * 115.55112 * 186.34003 * 15 14 13 17 17 H 1.07994 * 120.00096 * 144.44665 * 16 15 14 18 18 C 1.37882 * 119.99509 * 324.44543 * 16 15 14 19 19 N 1.31514 * 119.99431 * 167.75556 * 18 16 15 20 20 Si 1.86797 * 120.00291 * 347.75492 * 18 16 15 21 21 H 1.48499 * 109.46969 * 95.63742 * 20 18 16 22 22 H 1.48498 * 109.47096 * 215.63911 * 20 18 16 23 23 H 1.48495 * 109.47114 * 335.64152 * 20 18 16 24 24 C 1.52995 * 117.50165 * 40.66670 * 15 14 13 25 25 C 1.53000 * 117.50132 * 332.00462 * 15 14 13 26 26 C 1.39599 * 119.00428 * 0.25168 * 10 9 8 27 27 N 1.31697 * 120.48793 * 359.45798 * 26 10 9 28 28 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47183 * 299.99700 * 1 2 3 30 30 H 1.09006 * 109.46986 * 59.99928 * 1 2 3 31 31 H 1.09006 * 109.47097 * 60.00531 * 3 2 1 32 32 H 1.08993 * 109.47486 * 300.00594 * 3 2 1 33 33 H 1.08998 * 109.47272 * 60.00579 * 4 3 2 34 34 H 1.09001 * 109.47473 * 300.00296 * 4 3 2 35 35 H 1.08998 * 109.47083 * 59.99928 * 5 4 3 36 36 H 1.08996 * 109.46738 * 299.99684 * 5 4 3 37 37 H 1.07997 * 120.29880 * 359.97438 * 8 7 6 38 38 H 1.08000 * 120.76271 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.46945 * 297.00270 * 14 13 11 40 40 H 1.09001 * 109.46914 * 57.00367 * 14 13 11 41 41 H 0.97001 * 119.99719 * 179.97438 * 19 18 16 42 42 H 1.09002 * 117.50269 * 0.02562 * 24 15 14 43 43 H 1.09000 * 117.49911 * 145.02350 * 24 15 14 44 44 H 1.08995 * 117.50697 * 214.98443 * 25 15 14 45 45 H 1.09005 * 117.49586 * 359.97438 * 25 15 14 46 46 H 1.07998 * 119.75841 * 179.74463 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.5822 2.4696 0.0013 7 6 6.2907 3.6245 0.0013 8 6 7.6815 3.5756 0.0018 9 6 8.3953 4.7444 0.0013 10 6 7.6912 5.9581 0.0008 11 6 8.4147 7.2432 0.0007 12 8 9.6242 7.2594 0.1156 13 8 7.7346 8.3994 -0.1267 14 6 8.5056 9.6281 -0.0641 15 6 7.5805 10.8234 -0.3013 16 6 8.2637 12.1619 -0.4137 17 1 7.8814 12.9078 -1.0949 18 6 9.3768 12.4343 0.3531 19 7 10.1133 13.4917 0.0904 20 14 9.8385 11.3015 1.7648 21 1 10.8522 10.3205 1.3010 22 1 10.4008 12.1046 2.8802 23 1 8.6295 10.5790 2.2354 24 6 6.1988 10.7884 0.3548 25 6 6.3335 10.5927 -1.1573 26 6 6.2954 5.9309 0.0062 27 7 5.6495 4.7832 0.0009 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6437 -0.8891 34 1 3.8568 0.6439 0.8908 35 1 3.8357 3.1232 0.8913 36 1 3.8365 3.1235 -0.8887 37 1 8.1932 2.6246 0.0027 38 1 9.4752 4.7322 0.0013 39 1 8.9689 9.7167 0.9186 40 1 9.2803 9.6104 -0.8307 41 1 10.8962 13.6835 0.6301 42 1 5.9489 9.9141 0.9559 43 1 5.7837 11.7336 0.7048 44 1 6.0071 11.4090 -1.8016 45 1 6.1725 9.5894 -1.5519 46 1 5.7413 6.8578 0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174748039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:43 Heat of formation + Delta-G solvation = -96.189775 kcal Electronic energy + Delta-G solvation = -27737.181380 eV Core-core repulsion = 23594.263793 eV Total energy + Delta-G solvation = -4142.917587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15529 -39.98874 -38.69015 -38.12388 -37.14638 -35.37942 -33.61647 -32.92862 -32.31301 -31.11806 -27.97478 -27.61417 -25.91909 -25.36238 -24.34309 -23.62576 -21.98404 -21.43008 -21.09251 -19.21457 -18.93227 -17.98966 -17.54308 -17.14175 -16.93153 -16.46921 -16.25546 -16.07303 -15.97102 -15.46259 -14.89053 -14.73779 -14.43648 -14.23512 -14.16544 -13.62081 -13.55660 -13.18472 -13.11162 -12.80370 -12.59635 -12.36574 -12.18697 -12.09869 -11.82336 -11.58609 -11.20847 -11.10897 -10.84912 -10.65102 -10.47621 -10.43887 -10.34825 -10.20790 -9.95117 -9.80253 -9.55431 -9.29568 -8.91825 -8.74870 -8.37831 -6.29128 -4.23255 0.39581 0.90258 2.35924 2.58111 2.88439 3.20648 3.27925 3.32004 3.36375 3.54710 3.91831 4.24236 4.37318 4.48816 4.54179 4.58850 4.60547 4.68544 4.74411 4.80415 4.86059 4.91688 4.92578 5.02087 5.08550 5.18439 5.29227 5.31457 5.51510 5.52292 5.61446 5.66779 5.76487 5.84001 5.95854 5.99521 6.16969 6.47878 6.55830 6.59397 6.65731 6.78887 6.87520 6.96006 7.18730 7.39564 7.57621 7.97531 8.36400 8.76174 9.33299 10.82913 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020494 B = 0.002066 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.933441 B =13549.420676 C =14511.452291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.072 3.928 6 O -0.299 6.299 7 C 0.349 3.651 8 C -0.199 4.199 9 C 0.019 3.981 10 C -0.210 4.210 11 C 0.508 3.492 12 O -0.509 6.509 13 O -0.347 6.347 14 C 0.088 3.912 15 C 0.004 3.996 16 C -0.483 4.483 17 H 0.086 0.914 18 C 0.079 3.921 19 N -0.882 5.882 20 Si 0.870 3.130 21 H -0.272 1.272 22 H -0.289 1.289 23 H -0.258 1.258 24 C -0.199 4.199 25 C -0.178 4.178 26 C 0.204 3.796 27 N -0.547 5.547 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.269 0.731 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 -25.714 0.407 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.159 4.159 5 C -0.003 4.003 6 O -0.205 6.205 7 C 0.170 3.830 8 C -0.220 4.220 9 C -0.006 4.006 10 C -0.214 4.214 11 C 0.352 3.648 12 O -0.398 6.398 13 O -0.263 6.263 14 C 0.016 3.984 15 C 0.003 3.997 16 C -0.520 4.520 17 H 0.104 0.896 18 C -0.126 4.126 19 N -0.517 5.517 20 Si 0.700 3.300 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.184 1.184 24 C -0.237 4.237 25 C -0.215 4.215 26 C 0.047 3.953 27 N -0.271 5.271 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.510 -25.998 0.470 29.777 hybrid contribution 0.967 -0.048 0.813 1.264 sum -13.543 -26.046 1.283 29.385 Atomic orbital electron populations 1.22772 0.80496 1.02991 1.00241 1.87853 1.20103 1.27618 1.95496 1.22302 0.92859 0.85029 1.00932 1.21412 0.93291 0.96145 1.05032 1.22503 0.77116 0.97318 1.03370 1.86165 1.20931 1.26615 1.86821 1.20120 0.89121 0.85007 0.88768 1.20748 0.90988 1.00387 1.09836 1.21288 1.01585 0.89476 0.88231 1.20095 0.95095 0.92108 1.14057 1.20711 0.85859 0.84704 0.73509 1.90843 1.14959 1.88211 1.45834 1.86484 1.42719 1.15007 1.82128 1.23620 0.94460 0.78445 1.01883 1.19383 0.86525 0.92579 1.01263 1.20290 1.11445 0.95679 1.24574 0.89600 1.24996 0.95321 0.95353 0.96894 1.69897 1.15563 1.27655 1.38634 0.87199 0.79240 0.80289 0.83295 1.19869 1.21642 1.18389 1.23113 1.05133 1.00954 0.94505 1.22742 1.04795 1.00581 0.93399 1.22982 0.90437 0.95333 0.86528 1.67517 1.40740 0.98046 1.20747 0.89419 0.93850 0.93846 0.92724 0.92696 0.89895 0.89916 0.90909 0.90884 0.83140 0.82612 0.91621 0.90331 0.92106 0.90982 0.89691 0.89956 0.90258 0.80342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.08 10.70 -35.23 -0.38 -3.46 16 3 C 0.07 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.81 5.95 -26.73 -0.16 -0.97 16 5 C 0.07 0.57 5.30 37.16 0.20 0.77 16 6 O -0.30 -2.97 10.10 -18.15 -0.18 -3.16 16 7 C 0.35 3.86 7.49 -16.95 -0.13 3.73 16 8 C -0.20 -1.98 9.97 -39.70 -0.40 -2.38 16 9 C 0.02 0.22 9.66 -39.27 -0.38 -0.16 16 10 C -0.21 -2.88 5.89 -104.84 -0.62 -3.50 16 11 C 0.51 9.01 7.88 34.50 0.27 9.28 16 12 O -0.51 -10.38 16.17 -19.26 -0.31 -10.69 16 13 O -0.35 -6.62 7.79 -40.61 -0.32 -6.94 16 14 C 0.09 1.98 4.14 37.16 0.15 2.13 16 15 C 0.00 0.08 1.84 -155.66 -0.29 -0.20 16 16 C -0.48 -13.25 9.57 -34.44 -0.33 -13.58 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.08 2.21 5.42 -17.82 -0.10 2.12 16 19 N -0.88 -26.09 13.96 55.43 0.77 -25.32 16 20 Si 0.87 21.56 24.22 -169.99 -4.12 17.44 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.15 6.36 56.52 0.36 -5.79 16 24 C -0.20 -4.11 9.67 -26.70 -0.26 -4.37 16 25 C -0.18 -3.57 9.63 -26.69 -0.26 -3.83 16 26 C 0.20 2.53 10.79 -17.10 -0.18 2.35 16 27 N -0.55 -6.49 9.19 -12.94 -0.12 -6.61 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.16 1.62 7.74 -52.49 -0.41 1.22 16 39 H 0.07 1.57 2.66 -51.93 -0.14 1.43 16 40 H 0.08 1.82 8.06 -51.93 -0.42 1.41 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 1.37 7.87 -51.93 -0.41 0.96 16 43 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.08 1.43 7.46 -51.93 -0.39 1.05 16 46 H 0.18 2.04 7.63 -52.49 -0.40 1.64 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -31.83 388.17 -6.76 -38.59 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.83 Total: 1.02 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.14 Total: -6.73 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.65 Total: -31.93 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.19 Total: -24.25 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.12 Total: 17.44 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.83 -6.76 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174748039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.598 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds