Wall clock time and date at job start Tue Mar 31 2020 19:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99823 * 2 1 4 4 C 1.52997 * 109.47043 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.46978 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.46741 * 180.02562 * 5 4 3 7 7 C 1.35485 * 116.99738 * 179.97438 * 6 5 4 8 8 C 1.39164 * 119.51390 * 179.97438 * 7 6 5 9 9 C 1.36953 * 119.39881 * 179.97438 * 8 7 6 10 10 C 1.40312 * 118.46747 * 0.02562 * 9 8 7 11 11 C 1.47484 * 120.49871 * 179.97438 * 10 9 8 12 12 O 1.21498 * 119.99915 * 353.75534 * 11 10 9 13 13 O 1.34744 * 120.00130 * 173.75570 * 11 10 9 14 14 C 1.45201 * 117.00021 * 177.57623 * 13 11 10 15 15 C 1.52996 * 109.47016 * 177.00664 * 14 13 11 16 16 C 1.50704 * 115.55112 * 186.34003 * 15 14 13 17 17 H 1.07994 * 120.00096 * 144.44665 * 16 15 14 18 18 C 1.37882 * 119.99509 * 324.44543 * 16 15 14 19 19 N 1.31514 * 119.99431 * 167.75556 * 18 16 15 20 20 Si 1.86797 * 120.00291 * 347.75492 * 18 16 15 21 21 H 1.48499 * 109.46969 * 95.63742 * 20 18 16 22 22 H 1.48498 * 109.47096 * 215.63911 * 20 18 16 23 23 H 1.48495 * 109.47114 * 335.64152 * 20 18 16 24 24 C 1.52995 * 117.50165 * 40.66670 * 15 14 13 25 25 C 1.53000 * 117.50132 * 332.00462 * 15 14 13 26 26 C 1.39599 * 119.00428 * 0.25168 * 10 9 8 27 27 N 1.31697 * 120.48793 * 359.45798 * 26 10 9 28 28 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47183 * 299.99700 * 1 2 3 30 30 H 1.09006 * 109.46986 * 59.99928 * 1 2 3 31 31 H 1.09006 * 109.47097 * 60.00531 * 3 2 1 32 32 H 1.08993 * 109.47486 * 300.00594 * 3 2 1 33 33 H 1.08998 * 109.47272 * 60.00579 * 4 3 2 34 34 H 1.09001 * 109.47473 * 300.00296 * 4 3 2 35 35 H 1.08998 * 109.47083 * 59.99928 * 5 4 3 36 36 H 1.08996 * 109.46738 * 299.99684 * 5 4 3 37 37 H 1.07997 * 120.29880 * 359.97438 * 8 7 6 38 38 H 1.08000 * 120.76271 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.46945 * 297.00270 * 14 13 11 40 40 H 1.09001 * 109.46914 * 57.00367 * 14 13 11 41 41 H 0.97001 * 119.99719 * 179.97438 * 19 18 16 42 42 H 1.09002 * 117.50269 * 0.02562 * 24 15 14 43 43 H 1.09000 * 117.49911 * 145.02350 * 24 15 14 44 44 H 1.08995 * 117.50697 * 214.98443 * 25 15 14 45 45 H 1.09005 * 117.49586 * 359.97438 * 25 15 14 46 46 H 1.07998 * 119.75841 * 179.74463 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.5822 2.4696 0.0013 7 6 6.2907 3.6245 0.0013 8 6 7.6815 3.5756 0.0018 9 6 8.3953 4.7444 0.0013 10 6 7.6912 5.9581 0.0008 11 6 8.4147 7.2432 0.0007 12 8 9.6242 7.2594 0.1156 13 8 7.7346 8.3994 -0.1267 14 6 8.5056 9.6281 -0.0641 15 6 7.5805 10.8234 -0.3013 16 6 8.2637 12.1619 -0.4137 17 1 7.8814 12.9078 -1.0949 18 6 9.3768 12.4343 0.3531 19 7 10.1133 13.4917 0.0904 20 14 9.8385 11.3015 1.7648 21 1 10.8522 10.3205 1.3010 22 1 10.4008 12.1046 2.8802 23 1 8.6295 10.5790 2.2354 24 6 6.1988 10.7884 0.3548 25 6 6.3335 10.5927 -1.1573 26 6 6.2954 5.9309 0.0062 27 7 5.6495 4.7832 0.0009 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6437 -0.8891 34 1 3.8568 0.6439 0.8908 35 1 3.8357 3.1232 0.8913 36 1 3.8365 3.1235 -0.8887 37 1 8.1932 2.6246 0.0027 38 1 9.4752 4.7322 0.0013 39 1 8.9689 9.7167 0.9186 40 1 9.2803 9.6104 -0.8307 41 1 10.8962 13.6835 0.6301 42 1 5.9489 9.9141 0.9559 43 1 5.7837 11.7336 0.7048 44 1 6.0071 11.4090 -1.8016 45 1 6.1725 9.5894 -1.5519 46 1 5.7413 6.8578 0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174748039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:42 Heat of formation + Delta-G solvation = -116.894359 kcal Electronic energy + Delta-G solvation = -27738.079198 eV Core-core repulsion = 23594.263793 eV Total energy + Delta-G solvation = -4143.815405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14700 -41.28653 -39.45852 -38.89774 -38.60718 -36.96867 -34.41917 -34.21237 -33.83353 -32.06350 -29.57529 -28.24590 -27.40381 -26.30467 -25.42999 -24.47426 -23.07261 -22.57327 -22.34420 -21.10409 -19.76671 -19.28764 -18.94228 -18.06836 -17.81288 -17.70827 -17.52382 -17.15352 -16.76411 -16.53844 -15.99817 -15.87534 -15.51366 -15.35856 -15.01565 -14.99365 -14.76370 -14.63122 -14.33536 -13.92149 -13.90152 -13.55218 -13.05625 -12.82067 -12.75047 -12.72762 -12.66291 -12.40446 -12.08002 -12.06540 -12.02772 -11.75056 -11.66977 -11.44494 -11.23465 -11.16802 -10.86266 -10.65595 -10.65493 -10.28421 -9.79945 -8.44777 -6.40797 -0.60369 0.05034 1.22503 1.25844 1.30853 1.34344 1.49455 1.67367 2.18708 2.58151 2.75079 2.82940 3.10051 3.35991 3.48057 3.67724 3.84973 3.85670 3.90053 3.93334 3.97681 4.02539 4.16932 4.19180 4.33922 4.41147 4.45446 4.49019 4.50035 4.55200 4.57815 4.70684 4.75453 4.86893 4.90489 4.97179 5.00148 5.00645 5.05396 5.19232 5.22912 5.36979 5.57295 5.58765 5.98684 6.18195 6.19852 6.47502 6.57637 6.60347 7.17865 8.71548 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020494 B = 0.002066 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.933441 B =13549.420676 C =14511.452291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.064 3.936 4 C -0.114 4.114 5 C 0.072 3.928 6 O -0.300 6.300 7 C 0.349 3.651 8 C -0.188 4.188 9 C 0.022 3.978 10 C -0.228 4.228 11 C 0.510 3.490 12 O -0.542 6.542 13 O -0.339 6.339 14 C 0.099 3.901 15 C -0.035 4.035 16 C -0.486 4.486 17 H 0.051 0.949 18 C 0.030 3.970 19 N -0.929 5.929 20 Si 0.925 3.075 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.240 1.240 24 C -0.180 4.180 25 C -0.156 4.156 26 C 0.211 3.789 27 N -0.552 5.552 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.180 0.820 38 H 0.164 0.836 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.271 0.729 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.258 -28.723 1.035 33.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.151 4.151 5 C -0.003 4.003 6 O -0.206 6.206 7 C 0.170 3.830 8 C -0.209 4.209 9 C -0.003 4.003 10 C -0.232 4.232 11 C 0.356 3.644 12 O -0.433 6.433 13 O -0.255 6.255 14 C 0.026 3.974 15 C -0.036 4.036 16 C -0.523 4.523 17 H 0.069 0.931 18 C -0.170 4.170 19 N -0.567 5.567 20 Si 0.753 3.247 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.165 1.165 24 C -0.218 4.218 25 C -0.193 4.193 26 C 0.054 3.946 27 N -0.277 5.277 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.197 0.803 38 H 0.181 0.819 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.487 -29.040 1.097 33.412 hybrid contribution 1.432 0.756 0.521 1.701 sum -15.055 -28.284 1.618 32.082 Atomic orbital electron populations 1.22939 0.79184 1.03909 1.01028 1.87810 1.21664 1.28519 1.95678 1.22353 0.92349 0.84743 1.01791 1.21337 0.93720 0.95333 1.04730 1.22626 0.76016 0.98063 1.03637 1.86178 1.22023 1.26102 1.86309 1.20401 0.89761 0.85071 0.87773 1.20994 0.90590 1.00990 1.08282 1.21423 1.02103 0.89119 0.87634 1.19927 0.95590 0.90575 1.17092 1.21366 0.85740 0.85121 0.72170 1.90830 1.16446 1.88470 1.47602 1.86461 1.41974 1.14547 1.82525 1.23111 0.93983 0.79883 1.00437 1.19261 0.87761 0.91116 1.05496 1.20458 1.11508 0.97121 1.23254 0.93103 1.25662 0.95534 0.96648 0.99121 1.70007 1.16637 1.29845 1.40250 0.86300 0.79357 0.78470 0.80560 1.20485 1.21344 1.16529 1.23108 1.01458 1.01921 0.95270 1.22810 1.01199 1.01981 0.93316 1.23067 0.89833 0.95948 0.85777 1.67561 1.40744 0.98129 1.21221 0.88566 0.93052 0.93048 0.91864 0.91834 0.90192 0.90215 0.90616 0.90594 0.80280 0.81864 0.92932 0.92118 0.91977 0.88514 0.89948 0.90055 0.87662 0.79473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.42 -5.90 10.70 -148.98 -1.59 -7.50 16 3 C 0.06 0.67 5.94 71.98 0.43 1.10 16 4 C -0.11 -1.30 5.95 30.60 0.18 -1.12 16 5 C 0.07 0.95 5.30 71.99 0.38 1.33 16 6 O -0.30 -5.11 10.10 -87.85 -0.89 -6.00 16 7 C 0.35 6.66 7.49 84.82 0.64 7.29 16 8 C -0.19 -3.14 9.97 22.19 0.22 -2.92 16 9 C 0.02 0.45 9.66 22.47 0.22 0.66 16 10 C -0.23 -5.78 5.89 -20.01 -0.12 -5.90 16 11 C 0.51 17.36 7.88 70.26 0.55 17.91 16 12 O -0.54 -21.81 16.17 19.84 0.32 -21.49 16 13 O -0.34 -12.31 7.79 -56.54 -0.44 -12.75 16 14 C 0.10 4.38 4.14 71.98 0.30 4.67 16 15 C -0.04 -1.63 1.84 -52.93 -0.10 -1.73 16 16 C -0.49 -27.28 9.57 25.60 0.25 -27.03 16 17 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 18 C 0.03 1.74 5.42 84.66 0.46 2.20 16 19 N -0.93 -56.90 13.96 21.45 0.30 -56.60 16 20 Si 0.92 45.16 24.22 68.60 1.66 46.82 16 21 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.24 -10.92 6.36 99.48 0.63 -10.29 16 24 C -0.18 -6.97 9.67 30.62 0.30 -6.68 16 25 C -0.16 -5.92 9.63 30.62 0.29 -5.63 16 26 C 0.21 4.67 10.79 85.04 0.92 5.59 16 27 N -0.55 -11.53 9.19 -307.72 -2.83 -14.36 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.32 8.14 -2.38 -0.02 0.31 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.08 0.98 8.10 -2.39 -0.02 0.97 16 37 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.16 3.07 7.74 -2.91 -0.02 3.05 16 39 H 0.05 2.47 2.66 -2.38 -0.01 2.46 16 40 H 0.06 2.85 8.06 -2.39 -0.02 2.84 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.10 3.29 7.87 -2.39 -0.02 3.27 16 43 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 45 H 0.11 3.45 7.46 -2.38 -0.02 3.44 16 46 H 0.19 3.71 7.63 -2.91 -0.02 3.69 16 Total: -1.00 -69.68 388.17 3.60 -66.08 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.91 Total: 14.58 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 6.16 Total: -8.79 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -2.53 Total: -70.96 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -2.60 Total: -47.73 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.66 Total: 46.82 kcal Total: -69.68 3.60 -66.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174748039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.815 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds