Wall clock time and date at job start Tue Mar 31 2020 19:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34713 * 116.99822 * 2 1 4 4 O 1.21467 * 119.99826 * 0.02562 * 3 2 1 5 5 C 1.47728 * 119.99651 * 180.02562 * 3 2 1 6 6 C 1.39644 * 120.15416 * 359.97438 * 5 3 2 7 7 C 1.37920 * 119.85033 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14881 * 359.72791 * 7 6 5 9 9 C 1.38350 * 120.30146 * 0.55207 * 8 7 6 10 10 C 1.50696 * 119.92349 * 179.72314 * 9 8 7 11 11 H 1.09004 * 109.47278 * 159.72453 * 10 9 8 12 12 N 1.46905 * 109.47161 * 39.72530 * 10 9 8 13 13 C 1.46901 * 110.99870 * 155.00107 * 12 10 9 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46700 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46820 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00070 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99993 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47108 * 89.99504 * 20 18 16 22 22 H 1.48498 * 109.47097 * 209.99712 * 20 18 16 23 23 H 1.48499 * 109.46508 * 329.99366 * 20 18 16 24 24 C 1.50696 * 109.47248 * 279.72445 * 10 9 8 25 25 O 1.20826 * 120.00394 * 120.00029 * 24 10 9 26 26 O 1.34227 * 120.00076 * 300.00211 * 24 10 9 27 27 C 1.45202 * 117.00233 * 179.97438 * 26 24 10 28 28 C 1.37961 * 120.14759 * 359.44616 * 9 8 7 29 29 H 1.08993 * 109.47032 * 299.99330 * 1 2 3 30 30 H 1.08998 * 109.47352 * 59.99853 * 1 2 3 31 31 H 1.09010 * 109.46682 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.07368 * 0.04600 * 6 5 3 33 33 H 1.07996 * 119.92420 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.84959 * 180.27319 * 8 7 6 35 35 H 1.00901 * 110.99869 * 31.04818 * 12 10 9 36 36 H 1.09004 * 109.47031 * 299.99620 * 13 12 10 37 37 H 1.08995 * 109.47111 * 59.99900 * 13 12 10 38 38 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 39 39 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 40 40 H 1.08993 * 109.47740 * 299.99810 * 15 14 13 41 41 H 1.09005 * 109.47573 * 59.99976 * 15 14 13 42 42 H 0.96999 * 120.00009 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.46802 * 299.99664 * 27 26 24 44 44 H 1.08994 * 109.46995 * 59.99808 * 27 26 24 45 45 H 1.08999 * 109.47275 * 180.02562 * 27 26 24 46 46 H 1.08001 * 120.07357 * 180.29939 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3025 0.1085 -0.0006 7 6 5.6794 0.1879 -0.0006 8 6 6.3044 1.4227 -0.0063 9 6 5.5539 2.5849 -0.0005 10 6 6.2434 3.9249 -0.0004 11 1 5.5509 4.6899 -0.3519 12 7 7.4108 3.8750 -0.8907 13 6 7.7518 5.2148 -1.3873 14 6 8.9693 5.1223 -2.3095 15 6 9.3240 6.5176 -2.8272 16 6 10.5235 6.4266 -3.7349 17 1 10.9862 5.4693 -3.9240 18 6 11.0295 7.5654 -4.3249 19 7 12.0766 7.4861 -5.1167 20 14 10.2288 9.2213 -3.9985 21 1 10.8630 9.8528 -2.8136 22 1 10.4073 10.0995 -5.1825 23 1 8.7793 9.0276 -3.7399 24 6 6.6926 4.2587 1.3988 25 8 7.8649 4.4367 1.6307 26 8 5.7903 4.3582 2.3875 27 6 6.2946 4.6820 3.7101 28 6 4.1758 2.5199 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 3.8160 -0.8557 -0.0009 33 1 6.2711 -0.7155 -0.0010 34 1 7.3829 1.4792 -0.0107 35 1 7.2556 3.2347 -1.6549 36 1 6.9067 5.6227 -1.9418 37 1 7.9824 5.8668 -0.5448 38 1 9.8145 4.7142 -1.7553 39 1 8.7382 4.4705 -3.1519 40 1 8.4787 6.9254 -3.3813 41 1 9.5549 7.1699 -1.9849 42 1 12.4329 8.2873 -5.5315 43 1 6.9959 3.9115 4.0302 44 1 6.8027 5.6458 3.6792 45 1 5.4636 4.7313 4.4138 46 1 3.5912 3.4280 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179211200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:14 Heat of formation + Delta-G solvation = -142.567584 kcal Electronic energy + Delta-G solvation = -28172.462924 eV Core-core repulsion = 24027.534244 eV Total energy + Delta-G solvation = -4144.928680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08776 -40.59644 -39.27073 -37.10734 -36.76879 -35.98353 -34.01661 -32.38540 -31.72454 -30.79343 -28.66618 -28.13178 -27.13723 -25.40865 -24.40953 -22.90008 -22.06552 -21.49806 -20.55381 -20.03000 -18.47017 -17.67835 -17.33694 -16.78549 -16.73682 -16.66326 -16.38633 -16.36241 -15.55844 -15.33185 -14.84151 -14.37166 -14.16117 -13.98748 -13.96727 -13.82799 -13.66515 -13.26927 -12.86724 -12.82569 -12.58092 -12.54586 -12.26952 -12.06181 -11.96405 -11.61358 -11.44298 -11.22095 -11.03059 -10.91862 -10.87887 -10.77236 -10.58746 -9.95575 -9.72322 -9.63470 -9.43589 -9.25134 -9.14471 -8.53912 -8.50113 -6.01028 -3.98613 0.29810 0.84471 2.10243 2.18014 2.27952 2.51990 3.33331 3.34180 3.40213 3.43696 4.04221 4.18286 4.28714 4.48083 4.48510 4.67975 4.72733 4.73452 4.77454 4.84728 4.93871 4.96263 5.02664 5.04792 5.12870 5.32864 5.35036 5.37117 5.48873 5.59389 5.66997 5.80836 5.86694 5.99082 6.05279 6.12707 6.27207 6.38829 6.45341 6.55629 6.90332 6.97518 7.29626 7.33461 7.35120 7.48693 7.76393 7.82990 8.57879 9.04471 9.61587 11.12471 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.002364 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.675776 B =11840.731361 C =12595.271049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.504 6.504 5 C -0.132 4.132 6 C -0.055 4.055 7 C -0.133 4.133 8 C -0.056 4.056 9 C -0.106 4.106 10 C 0.142 3.858 11 H 0.092 0.908 12 N -0.666 5.666 13 C 0.056 3.944 14 C -0.097 4.097 15 C -0.013 4.013 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C 0.462 3.538 25 O -0.471 6.471 26 O -0.362 6.362 27 C 0.037 3.963 28 C -0.030 4.030 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.356 0.644 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.262 0.738 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.999 -17.134 15.674 32.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.392 6.392 5 C -0.133 4.133 6 C -0.073 4.073 7 C -0.150 4.150 8 C -0.074 4.074 9 C -0.107 4.107 10 C 0.030 3.970 11 H 0.110 0.890 12 N -0.300 5.300 13 C -0.072 4.072 14 C -0.135 4.135 15 C -0.051 4.051 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 C 0.302 3.698 25 O -0.355 6.355 26 O -0.279 6.279 27 C -0.057 4.057 28 C -0.048 4.048 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.282 -16.642 16.174 32.172 hybrid contribution -1.082 1.245 -0.341 1.684 sum -23.364 -15.397 15.833 32.150 Atomic orbital electron populations 1.23305 0.75742 1.03867 1.02787 1.86532 1.23735 1.32592 1.84371 1.21184 0.89083 0.81493 0.72699 1.90853 1.66751 1.35999 1.45624 1.18966 0.88949 0.94817 1.10551 1.21530 0.94024 0.97884 0.93846 1.21211 0.94233 0.98170 1.01432 1.21533 1.01588 0.91334 0.92922 1.19413 0.92877 0.93958 1.04439 1.19794 0.92615 0.95174 0.89383 0.89025 1.60114 1.34616 1.12490 1.22804 1.22316 0.98482 0.87834 0.98601 1.21415 0.95367 0.99941 0.96751 1.19541 0.97024 0.92512 0.96003 1.21135 1.11897 0.95792 1.26729 0.90972 1.25044 0.94727 0.99104 0.94759 1.69920 1.23606 1.29123 1.31705 0.86768 0.80525 0.84156 0.77763 1.20310 1.21445 1.19099 1.23520 0.84713 0.74271 0.87319 1.90707 1.18446 1.43391 1.82956 1.86494 1.40895 1.81591 1.18927 1.23234 1.00831 1.01343 0.80309 1.21106 0.93460 0.97204 0.93066 0.91726 0.91692 0.87862 0.84282 0.84532 0.83767 0.82301 0.95138 0.90999 0.91612 0.92841 0.96816 0.97004 0.92799 0.91954 0.91849 0.88277 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.99 9.82 -40.53 -0.40 -3.39 16 3 C 0.51 5.28 7.90 34.61 0.27 5.55 16 4 O -0.50 -6.45 16.14 -19.24 -0.31 -6.76 16 5 C -0.13 -1.25 5.87 -104.98 -0.62 -1.87 16 6 C -0.05 -0.42 9.62 -39.17 -0.38 -0.79 16 7 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 8 C -0.06 -0.51 8.99 -39.48 -0.35 -0.86 16 9 C -0.11 -1.08 4.63 -104.68 -0.49 -1.56 16 10 C 0.14 1.68 2.73 -70.02 -0.19 1.49 16 11 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 12 N -0.67 -9.00 5.21 -109.18 -0.57 -9.56 16 13 C 0.06 0.90 5.38 -3.82 -0.02 0.88 16 14 C -0.10 -1.92 5.41 -26.73 -0.14 -2.06 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 20 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 C 0.46 6.31 7.12 36.00 0.26 6.57 16 25 O -0.47 -7.96 15.67 -18.75 -0.29 -8.25 16 26 O -0.36 -4.31 10.48 -39.25 -0.41 -4.72 16 27 C 0.04 0.34 10.56 101.05 1.07 1.40 16 28 C -0.03 -0.30 9.21 -39.17 -0.36 -0.66 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.14 0.80 7.61 -52.49 -0.40 0.40 16 33 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.14 1.36 7.70 -52.49 -0.40 0.95 16 35 H 0.36 4.21 7.98 -39.29 -0.31 3.90 16 36 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 37 H 0.07 1.26 7.62 -51.93 -0.40 0.87 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 44 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.14 1.39 7.63 -52.49 -0.40 0.99 16 LS Contribution 395.16 15.07 5.96 5.96 Total: -1.00 -35.59 395.16 -7.64 -43.22 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.89 Total: -0.46 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.83 Total: -5.97 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.20 Total: -37.11 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.41 Total: -23.12 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.59 -7.64 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179211200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.343 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds