Wall clock time and date at job start Tue Mar 31 2020 19:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34713 * 116.99822 * 2 1 4 4 O 1.21467 * 119.99826 * 0.02562 * 3 2 1 5 5 C 1.47728 * 119.99651 * 180.02562 * 3 2 1 6 6 C 1.39644 * 120.15416 * 359.97438 * 5 3 2 7 7 C 1.37920 * 119.85033 * 180.02562 * 6 5 3 8 8 C 1.38393 * 120.14881 * 359.72791 * 7 6 5 9 9 C 1.38350 * 120.30146 * 0.55207 * 8 7 6 10 10 C 1.50696 * 119.92349 * 179.72314 * 9 8 7 11 11 H 1.09004 * 109.47278 * 159.72453 * 10 9 8 12 12 N 1.46905 * 109.47161 * 39.72530 * 10 9 8 13 13 C 1.46901 * 110.99870 * 155.00107 * 12 10 9 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46700 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46820 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00070 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99993 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47108 * 89.99504 * 20 18 16 22 22 H 1.48498 * 109.47097 * 209.99712 * 20 18 16 23 23 H 1.48499 * 109.46508 * 329.99366 * 20 18 16 24 24 C 1.50696 * 109.47248 * 279.72445 * 10 9 8 25 25 O 1.20826 * 120.00394 * 120.00029 * 24 10 9 26 26 O 1.34227 * 120.00076 * 300.00211 * 24 10 9 27 27 C 1.45202 * 117.00233 * 179.97438 * 26 24 10 28 28 C 1.37961 * 120.14759 * 359.44616 * 9 8 7 29 29 H 1.08993 * 109.47032 * 299.99330 * 1 2 3 30 30 H 1.08998 * 109.47352 * 59.99853 * 1 2 3 31 31 H 1.09010 * 109.46682 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.07368 * 0.04600 * 6 5 3 33 33 H 1.07996 * 119.92420 * 180.02562 * 7 6 5 34 34 H 1.07999 * 119.84959 * 180.27319 * 8 7 6 35 35 H 1.00901 * 110.99869 * 31.04818 * 12 10 9 36 36 H 1.09004 * 109.47031 * 299.99620 * 13 12 10 37 37 H 1.08995 * 109.47111 * 59.99900 * 13 12 10 38 38 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 39 39 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 40 40 H 1.08993 * 109.47740 * 299.99810 * 15 14 13 41 41 H 1.09005 * 109.47573 * 59.99976 * 15 14 13 42 42 H 0.96999 * 120.00009 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.46802 * 299.99664 * 27 26 24 44 44 H 1.08994 * 109.46995 * 59.99808 * 27 26 24 45 45 H 1.08999 * 109.47275 * 180.02562 * 27 26 24 46 46 H 1.08001 * 120.07357 * 180.29939 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.3025 0.1085 -0.0006 7 6 5.6794 0.1879 -0.0006 8 6 6.3044 1.4227 -0.0063 9 6 5.5539 2.5849 -0.0005 10 6 6.2434 3.9249 -0.0004 11 1 5.5509 4.6899 -0.3519 12 7 7.4108 3.8750 -0.8907 13 6 7.7518 5.2148 -1.3873 14 6 8.9693 5.1223 -2.3095 15 6 9.3240 6.5176 -2.8272 16 6 10.5235 6.4266 -3.7349 17 1 10.9862 5.4693 -3.9240 18 6 11.0295 7.5654 -4.3249 19 7 12.0766 7.4861 -5.1167 20 14 10.2288 9.2213 -3.9985 21 1 10.8630 9.8528 -2.8136 22 1 10.4073 10.0995 -5.1825 23 1 8.7793 9.0276 -3.7399 24 6 6.6926 4.2587 1.3988 25 8 7.8649 4.4367 1.6307 26 8 5.7903 4.3582 2.3875 27 6 6.2946 4.6820 3.7101 28 6 4.1758 2.5199 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 3.8160 -0.8557 -0.0009 33 1 6.2711 -0.7155 -0.0010 34 1 7.3829 1.4792 -0.0107 35 1 7.2556 3.2347 -1.6549 36 1 6.9067 5.6227 -1.9418 37 1 7.9824 5.8668 -0.5448 38 1 9.8145 4.7142 -1.7553 39 1 8.7382 4.4705 -3.1519 40 1 8.4787 6.9254 -3.3813 41 1 9.5549 7.1699 -1.9849 42 1 12.4329 8.2873 -5.5315 43 1 6.9959 3.9115 4.0302 44 1 6.8027 5.6458 3.6792 45 1 5.4636 4.7313 4.4138 46 1 3.5912 3.4280 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179211200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:13 Heat of formation + Delta-G solvation = -164.819620 kcal Electronic energy + Delta-G solvation = -28173.427845 eV Core-core repulsion = 24027.534244 eV Total energy + Delta-G solvation = -4145.893600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.91622 -41.47476 -40.02959 -38.14431 -37.51620 -37.15082 -35.65998 -34.06803 -32.41970 -32.17196 -29.62664 -28.73580 -28.40383 -26.62854 -25.17417 -24.07799 -23.25773 -22.29170 -21.92515 -21.26776 -19.33440 -18.88580 -18.49391 -18.12788 -17.70573 -17.40592 -17.32766 -17.05390 -16.61621 -16.45783 -16.11684 -15.84599 -15.11940 -15.07874 -14.74434 -14.67846 -14.58078 -14.47314 -14.24722 -13.96270 -13.71265 -13.53268 -13.29056 -13.05370 -12.99282 -12.75374 -12.72469 -12.55731 -12.20224 -11.83318 -11.81625 -11.78811 -11.72269 -11.64525 -11.57452 -11.46456 -11.29127 -10.76217 -10.12189 -9.97571 -9.61923 -8.29036 -6.32866 -0.40587 0.16377 1.13743 1.35726 1.36967 1.40440 1.49100 1.58684 1.67120 2.36186 2.63577 3.06043 3.06217 3.34929 3.63365 3.78155 3.82593 4.02425 4.09889 4.16995 4.23048 4.28661 4.30110 4.31015 4.32868 4.34506 4.39773 4.62768 4.65896 4.67459 4.75531 4.81276 4.87925 4.93250 5.10440 5.16457 5.20056 5.31058 5.34056 5.35887 5.49449 5.60286 5.66073 5.74275 5.80369 6.26602 6.31393 6.61585 6.74873 6.75654 7.31336 8.87770 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.002364 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.675776 B =11840.731361 C =12595.271049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.512 3.488 4 O -0.537 6.537 5 C -0.144 4.144 6 C -0.043 4.043 7 C -0.124 4.124 8 C -0.061 4.061 9 C -0.112 4.112 10 C 0.145 3.855 11 H 0.105 0.895 12 N -0.670 5.670 13 C 0.070 3.930 14 C -0.087 4.087 15 C -0.011 4.011 16 C -0.531 4.531 17 H 0.032 0.968 18 C 0.001 3.999 19 N -0.952 5.952 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.244 1.244 24 C 0.464 3.536 25 O -0.511 6.511 26 O -0.363 6.363 27 C 0.029 3.971 28 C -0.035 4.035 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.140 0.860 35 H 0.365 0.635 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.024 0.976 41 H 0.013 0.987 42 H 0.266 0.734 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.132 0.868 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.479 -17.928 16.706 35.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.358 3.642 4 O -0.428 6.428 5 C -0.145 4.145 6 C -0.061 4.061 7 C -0.142 4.142 8 C -0.080 4.080 9 C -0.113 4.113 10 C 0.033 3.967 11 H 0.123 0.877 12 N -0.306 5.306 13 C -0.058 4.058 14 C -0.125 4.125 15 C -0.049 4.049 16 C -0.569 4.569 17 H 0.050 0.950 18 C -0.196 4.196 19 N -0.592 5.592 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.168 1.168 24 C 0.306 3.694 25 O -0.398 6.398 26 O -0.279 6.279 27 C -0.064 4.064 28 C -0.053 4.053 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.157 0.843 35 H 0.188 0.812 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.150 0.850 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.796 -17.479 17.220 34.884 hybrid contribution -0.311 1.329 -0.625 1.501 sum -25.108 -16.150 16.594 34.156 Atomic orbital electron populations 1.23604 0.74197 1.05998 1.02618 1.86522 1.25252 1.31436 1.83790 1.21360 0.89401 0.81566 0.71856 1.90835 1.67478 1.37096 1.47379 1.19053 0.88801 0.95332 1.11283 1.21794 0.94026 0.98174 0.92114 1.21494 0.94344 0.98415 0.99922 1.21611 1.01412 0.91857 0.93076 1.19217 0.92845 0.93287 1.05906 1.19794 0.92013 0.96807 0.88049 0.87727 1.59920 1.36157 1.11189 1.23320 1.21989 0.97253 0.89226 0.97382 1.21208 0.96518 0.97395 0.97395 1.19492 0.95141 0.95161 0.95088 1.21499 1.13453 0.94343 1.27619 0.94977 1.26059 0.95328 1.03775 0.94422 1.70074 1.25458 1.30570 1.33141 0.85631 0.80538 0.78414 0.77895 1.19508 1.20818 1.16780 1.23880 0.84273 0.73089 0.88175 1.90690 1.19996 1.45439 1.83695 1.86493 1.40556 1.81103 1.19727 1.23517 1.02318 1.01024 0.79531 1.21064 0.93295 0.97513 0.93476 0.91864 0.91983 0.84588 0.81970 0.81759 0.84250 0.81166 0.93429 0.92299 0.93489 0.92421 0.95782 0.96868 0.92529 0.92027 0.92299 0.85001 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.25 9.82 -56.22 -0.55 -5.80 16 3 C 0.51 9.96 7.90 70.33 0.56 10.52 16 4 O -0.54 -13.52 16.14 19.94 0.32 -13.20 16 5 C -0.14 -2.49 5.87 -20.10 -0.12 -2.61 16 6 C -0.04 -0.54 9.62 22.53 0.22 -0.32 16 7 C -0.12 -1.48 10.03 22.23 0.22 -1.26 16 8 C -0.06 -1.02 8.99 22.33 0.20 -0.82 16 9 C -0.11 -2.13 4.63 -19.90 -0.09 -2.22 16 10 C 0.14 3.29 2.73 43.42 0.12 3.41 16 11 H 0.11 2.12 7.66 -2.38 -0.02 2.10 16 12 N -0.67 -17.56 5.21 -499.34 -2.60 -20.16 16 13 C 0.07 2.20 5.38 86.30 0.46 2.66 16 14 C -0.09 -3.45 5.41 30.59 0.17 -3.29 16 15 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 16 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 17 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 18 C 0.00 0.04 5.47 84.65 0.46 0.50 16 19 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 20 Si 0.95 45.33 27.47 68.60 1.88 47.21 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.24 -10.70 6.54 99.48 0.65 -10.04 16 24 C 0.46 12.43 7.12 71.23 0.51 12.94 16 25 O -0.51 -17.33 15.67 21.97 0.34 -16.99 16 26 O -0.36 -8.29 10.48 -51.38 -0.54 -8.83 16 27 C 0.03 0.50 10.56 113.37 1.20 1.70 16 28 C -0.03 -0.65 9.21 22.54 0.21 -0.45 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.14 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.16 1.25 7.61 -2.91 -0.02 1.23 16 33 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.14 2.46 7.70 -2.91 -0.02 2.44 16 35 H 0.37 8.26 7.98 -89.69 -0.72 7.54 16 36 H 0.05 1.34 8.06 -2.39 -0.02 1.32 16 37 H 0.06 2.02 7.62 -2.39 -0.02 2.00 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 41 H 0.01 0.62 7.57 -2.38 -0.02 0.60 16 42 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 43 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 44 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 45 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.14 2.63 7.63 -2.91 -0.02 2.61 16 Total: -1.00 -78.88 395.16 5.05 -73.83 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.22 Total: 14.05 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.67 Total: -9.42 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -2.30 Total: -80.86 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -0.42 Total: -44.81 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -78.88 5.05 -73.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179211200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.988 kcal (2) G-P(sol) polarization free energy of solvation -78.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds