Wall clock time and date at job start Tue Mar 31 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35976 * 117.00129 * 2 1 4 4 C 1.38721 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.38112 * 120.00015 * 179.97438 * 4 3 2 6 6 C 1.38722 * 119.99884 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99925 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99713 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00115 * 0.02562 * 6 5 4 10 10 C 1.50696 * 119.99758 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.46955 * 85.00396 * 10 9 6 12 12 C 1.50707 * 109.47017 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99658 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00011 * 179.97438 * 12 11 10 15 15 C 1.47584 * 134.49657 * 179.97438 * 14 12 11 16 16 C 1.53946 * 86.12025 * 155.36378 * 15 14 12 17 17 O 1.42897 * 113.74068 * 269.15867 * 16 15 14 18 18 C 1.50700 * 113.74246 * 137.95222 * 16 15 14 19 19 H 1.07998 * 119.99659 * 4.91778 * 18 16 15 20 20 C 1.37870 * 120.00275 * 184.91298 * 18 16 15 21 21 N 1.31521 * 119.99939 * 13.83955 * 20 18 16 22 22 Si 1.86793 * 120.00241 * 193.83635 * 20 18 16 23 23 H 1.48503 * 109.47305 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47166 * 299.99995 * 22 20 18 25 25 H 1.48499 * 109.46987 * 59.99962 * 22 20 18 26 26 C 1.47585 * 134.49296 * 0.02562 * 14 12 11 27 27 C 1.38156 * 119.99945 * 0.23219 * 9 6 5 28 28 H 1.09003 * 109.46645 * 299.99714 * 1 2 3 29 29 H 1.08995 * 109.46761 * 59.99866 * 1 2 3 30 30 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99991 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99963 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47124 * 59.99778 * 8 7 6 34 34 H 1.08998 * 109.47104 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.47080 * 299.99730 * 8 7 6 36 36 H 1.09002 * 109.47561 * 324.99808 * 10 9 6 37 37 H 1.09004 * 109.47099 * 204.99802 * 10 9 6 38 38 H 1.08992 * 109.47552 * 59.99932 * 11 10 9 39 39 H 1.08994 * 109.47209 * 299.99398 * 11 10 9 40 40 H 1.09003 * 113.76727 * 41.05948 * 15 14 12 41 41 H 1.09000 * 113.86995 * 269.68290 * 15 14 12 42 42 H 0.96698 * 114.00098 * 171.44601 * 17 16 15 43 43 H 0.97007 * 119.99483 * 5.87247 * 21 20 18 44 44 H 1.08994 * 113.77423 * 90.33340 * 26 14 12 45 45 H 1.09010 * 113.76672 * 318.93187 * 26 14 12 46 46 H 1.07997 * 119.99625 * 179.72383 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3033 3.6781 0.0005 7 8 3.9207 4.8897 0.0005 8 6 3.0807 6.0458 0.0017 9 6 4.0585 2.5150 -0.0011 10 6 5.5634 2.5939 -0.0022 11 6 6.0673 2.7449 1.4345 12 6 7.5723 2.8231 1.4334 13 8 8.1818 2.7645 0.3865 14 7 8.2408 2.9593 2.5957 15 6 9.6664 3.0651 2.9627 16 6 9.1787 3.7941 4.2279 17 8 9.0918 5.2124 4.0771 18 6 9.9017 3.3799 5.4836 19 1 10.7343 2.6944 5.4260 20 6 9.5005 3.8761 6.7057 21 7 8.3395 4.4835 6.8197 22 14 10.6055 3.6856 8.1996 23 1 9.9493 4.2988 9.3822 24 1 10.8432 2.2428 8.4587 25 1 11.9023 4.3631 7.9456 26 6 7.8414 3.0617 4.0127 27 6 3.4313 1.2841 -0.0070 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2124 2.3185 0.0005 32 1 1.3297 4.5113 0.0011 33 1 2.4521 6.0373 0.8921 34 1 3.6985 6.9438 0.0020 35 1 2.4507 6.0381 -0.8879 36 1 5.8818 3.4541 -0.5912 37 1 5.9747 1.6832 -0.4376 38 1 5.7490 1.8847 2.0234 39 1 5.6561 3.6555 1.8699 40 1 10.2479 3.6949 2.2893 41 1 10.1423 2.1055 3.1645 42 1 8.6647 5.6614 4.8195 43 1 7.7289 4.5079 6.0664 44 1 7.7802 2.1003 4.5225 45 1 6.9653 3.6889 4.1781 46 1 4.0195 0.3784 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186831633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:43 Heat of formation + Delta-G solvation = -103.412274 kcal Electronic energy + Delta-G solvation = -28779.013106 eV Core-core repulsion = 24635.782328 eV Total energy + Delta-G solvation = -4143.230778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73181 -39.63116 -39.13354 -37.67443 -36.66227 -34.25256 -33.74325 -32.36755 -30.64086 -29.75293 -28.35953 -27.54793 -27.07098 -25.49903 -25.22789 -23.77432 -22.33680 -21.15054 -20.16271 -18.41260 -18.20123 -17.85018 -17.66470 -17.04887 -16.34718 -16.06065 -15.72586 -15.38662 -15.29468 -14.97062 -14.68682 -14.62003 -14.17602 -13.93509 -13.77158 -13.22200 -13.13169 -13.03464 -13.00447 -12.49043 -12.37292 -12.13921 -11.98680 -11.91321 -11.76469 -11.67565 -11.50189 -11.11036 -10.91786 -10.86434 -10.77108 -10.59472 -10.52354 -10.21246 -9.46326 -9.30467 -9.03587 -8.81094 -8.37649 -7.88244 -7.83177 -6.67396 -4.46363 1.03760 1.29544 3.03181 3.19162 3.22969 3.31472 3.35302 3.42788 3.53432 3.60875 4.33362 4.46888 4.51815 4.76811 4.79852 4.84793 4.87281 4.90230 4.98621 4.99702 5.15631 5.24616 5.25799 5.29315 5.32599 5.36574 5.44683 5.65246 5.73697 5.77307 5.81605 6.01417 6.07756 6.10490 6.18744 6.22519 6.37789 6.39891 6.43009 6.50573 6.56973 6.81762 7.08759 7.31950 7.67770 8.10668 8.41279 8.46865 8.73552 8.86675 9.23947 10.64155 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.002520 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.214976 B =11107.095845 C =11371.643180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.091 3.909 4 C -0.174 4.174 5 C -0.168 4.168 6 C 0.098 3.902 7 O -0.309 6.309 8 C 0.027 3.973 9 C -0.069 4.069 10 C -0.054 4.054 11 C -0.125 4.125 12 C 0.530 3.470 13 O -0.564 6.564 14 N -0.634 5.634 15 C 0.122 3.878 16 C 0.216 3.784 17 O -0.566 6.566 18 C -0.616 4.616 19 H 0.065 0.935 20 C 0.036 3.964 21 N -0.898 5.898 22 Si 1.067 2.933 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.070 3.930 27 C -0.109 4.109 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.374 0.626 43 H 0.268 0.732 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.570 -3.235 -11.057 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.047 3.953 4 C -0.193 4.193 5 C -0.187 4.187 6 C 0.053 3.947 7 O -0.222 6.222 8 C -0.068 4.068 9 C -0.070 4.070 10 C -0.092 4.092 11 C -0.165 4.165 12 C 0.320 3.680 13 O -0.444 6.444 14 N -0.368 5.368 15 C 0.000 4.000 16 C 0.175 3.825 17 O -0.373 6.373 18 C -0.654 4.654 19 H 0.083 0.917 20 C -0.169 4.169 21 N -0.535 5.535 22 Si 0.893 3.107 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.053 4.053 27 C -0.127 4.127 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.223 0.777 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.640 -3.152 -10.768 20.069 hybrid contribution -1.254 -0.090 -0.995 1.603 sum -17.894 -3.242 -11.762 21.658 Atomic orbital electron populations 1.23017 0.78706 1.03804 1.01132 1.86083 1.21060 1.26728 1.89325 1.18846 0.92156 0.84166 1.00156 1.20963 0.99804 0.91686 1.06846 1.20988 0.93161 0.98357 1.06220 1.18760 0.90612 0.85554 0.99813 1.86165 1.35181 1.12009 1.88847 1.23051 0.95945 0.86840 1.00941 1.19107 0.96117 0.89642 1.02119 1.20167 0.88386 1.04427 0.96187 1.21496 0.92415 1.04256 0.98293 1.20228 0.89508 0.75877 0.82385 1.90630 1.70425 1.52424 1.30909 1.50181 1.09899 1.70623 1.06099 1.23264 0.82751 0.99287 0.94678 1.20152 0.90153 0.79297 0.92929 1.86255 1.83301 1.19896 1.47819 1.22233 1.19195 1.32420 0.91589 0.91697 1.25975 0.97510 0.92197 1.01255 1.70942 1.07064 1.40833 1.34647 0.83587 0.75275 0.76602 0.75215 1.20590 1.21132 1.21013 1.24448 1.01750 1.01222 0.77855 1.20184 0.91248 0.97552 1.03754 0.92788 0.92880 0.88346 0.85389 0.85206 0.92759 0.88137 0.92950 0.89528 0.90196 0.89412 0.89011 0.91104 0.89458 0.77690 0.92007 0.89578 0.91718 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.44 10.50 -19.66 -0.21 -3.65 16 3 C 0.09 1.06 6.69 -39.24 -0.26 0.80 16 4 C -0.17 -1.77 9.03 -39.45 -0.36 -2.13 16 5 C -0.17 -1.78 9.03 -39.45 -0.36 -2.14 16 6 C 0.10 1.25 6.66 -39.24 -0.26 0.99 16 7 O -0.31 -4.00 9.63 -19.70 -0.19 -4.19 16 8 C 0.03 0.24 9.81 101.05 0.99 1.23 16 9 C -0.07 -0.92 5.14 -104.49 -0.54 -1.46 16 10 C -0.05 -0.80 4.35 -27.89 -0.12 -0.92 16 11 C -0.12 -2.02 5.43 -27.88 -0.15 -2.17 16 12 C 0.53 10.83 8.06 -10.98 -0.09 10.74 16 13 O -0.56 -12.98 16.71 5.56 0.09 -12.89 16 14 N -0.63 -13.51 3.61 -178.25 -0.64 -14.15 16 15 C 0.12 2.71 8.22 -2.97 -0.02 2.69 16 16 C 0.22 5.15 1.08 -90.83 -0.10 5.05 16 17 O -0.57 -14.10 13.45 -35.23 -0.47 -14.57 16 18 C -0.62 -15.72 8.56 -34.44 -0.29 -16.02 16 19 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 20 C 0.04 0.93 5.26 -17.82 -0.09 0.83 16 21 N -0.90 -23.66 12.80 55.43 0.71 -22.95 16 22 Si 1.07 22.83 29.93 -169.99 -5.09 17.74 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 C 0.07 1.50 7.05 -2.95 -0.02 1.48 16 27 C -0.11 -1.35 9.61 -39.45 -0.38 -1.73 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16 32 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 33 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 36 H 0.09 1.40 7.64 -51.93 -0.40 1.00 16 37 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 42 H 0.37 9.07 6.95 45.56 0.32 9.39 16 43 H 0.27 6.86 5.53 -40.82 -0.23 6.64 16 44 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 45 H 0.06 1.33 7.80 -51.92 -0.41 0.93 16 46 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -31.56 383.72 -7.04 -38.61 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -5.96 Total: 11.85 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.06 Total: -1.58 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.07 Total: -37.10 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.78 Total: -35.30 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.09 Total: 17.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.56 -7.04 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186831633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.807 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds