Wall clock time and date at job start Tue Mar 31 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35976 * 117.00129 * 2 1 4 4 C 1.38721 * 120.00035 * 0.02562 * 3 2 1 5 5 C 1.38112 * 120.00015 * 179.97438 * 4 3 2 6 6 C 1.38722 * 119.99884 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99925 * 179.97438 * 6 5 4 8 8 C 1.42903 * 116.99713 * 0.02562 * 7 6 5 9 9 C 1.38675 * 120.00115 * 0.02562 * 6 5 4 10 10 C 1.50696 * 119.99758 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.46955 * 85.00396 * 10 9 6 12 12 C 1.50707 * 109.47017 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99658 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00011 * 179.97438 * 12 11 10 15 15 C 1.47584 * 134.49657 * 179.97438 * 14 12 11 16 16 C 1.53946 * 86.12025 * 155.36378 * 15 14 12 17 17 O 1.42897 * 113.74068 * 269.15867 * 16 15 14 18 18 C 1.50700 * 113.74246 * 137.95222 * 16 15 14 19 19 H 1.07998 * 119.99659 * 4.91778 * 18 16 15 20 20 C 1.37870 * 120.00275 * 184.91298 * 18 16 15 21 21 N 1.31521 * 119.99939 * 13.83955 * 20 18 16 22 22 Si 1.86793 * 120.00241 * 193.83635 * 20 18 16 23 23 H 1.48503 * 109.47305 * 180.02562 * 22 20 18 24 24 H 1.48502 * 109.47166 * 299.99995 * 22 20 18 25 25 H 1.48499 * 109.46987 * 59.99962 * 22 20 18 26 26 C 1.47585 * 134.49296 * 0.02562 * 14 12 11 27 27 C 1.38156 * 119.99945 * 0.23219 * 9 6 5 28 28 H 1.09003 * 109.46645 * 299.99714 * 1 2 3 29 29 H 1.08995 * 109.46761 * 59.99866 * 1 2 3 30 30 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.07998 * 119.99991 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.99963 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47124 * 59.99778 * 8 7 6 34 34 H 1.08998 * 109.47104 * 179.97438 * 8 7 6 35 35 H 1.09005 * 109.47080 * 299.99730 * 8 7 6 36 36 H 1.09002 * 109.47561 * 324.99808 * 10 9 6 37 37 H 1.09004 * 109.47099 * 204.99802 * 10 9 6 38 38 H 1.08992 * 109.47552 * 59.99932 * 11 10 9 39 39 H 1.08994 * 109.47209 * 299.99398 * 11 10 9 40 40 H 1.09003 * 113.76727 * 41.05948 * 15 14 12 41 41 H 1.09000 * 113.86995 * 269.68290 * 15 14 12 42 42 H 0.96698 * 114.00098 * 171.44601 * 17 16 15 43 43 H 0.97007 * 119.99483 * 5.87247 * 21 20 18 44 44 H 1.08994 * 113.77423 * 90.33340 * 26 14 12 45 45 H 1.09010 * 113.76672 * 318.93187 * 26 14 12 46 46 H 1.07997 * 119.99625 * 179.72383 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3033 3.6781 0.0005 7 8 3.9207 4.8897 0.0005 8 6 3.0807 6.0458 0.0017 9 6 4.0585 2.5150 -0.0011 10 6 5.5634 2.5939 -0.0022 11 6 6.0673 2.7449 1.4345 12 6 7.5723 2.8231 1.4334 13 8 8.1818 2.7645 0.3865 14 7 8.2408 2.9593 2.5957 15 6 9.6664 3.0651 2.9627 16 6 9.1787 3.7941 4.2279 17 8 9.0918 5.2124 4.0771 18 6 9.9017 3.3799 5.4836 19 1 10.7343 2.6944 5.4260 20 6 9.5005 3.8761 6.7057 21 7 8.3395 4.4835 6.8197 22 14 10.6055 3.6856 8.1996 23 1 9.9493 4.2988 9.3822 24 1 10.8432 2.2428 8.4587 25 1 11.9023 4.3631 7.9456 26 6 7.8414 3.0617 4.0127 27 6 3.4313 1.2841 -0.0070 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2124 2.3185 0.0005 32 1 1.3297 4.5113 0.0011 33 1 2.4521 6.0373 0.8921 34 1 3.6985 6.9438 0.0020 35 1 2.4507 6.0381 -0.8879 36 1 5.8818 3.4541 -0.5912 37 1 5.9747 1.6832 -0.4376 38 1 5.7490 1.8847 2.0234 39 1 5.6561 3.6555 1.8699 40 1 10.2479 3.6949 2.2893 41 1 10.1423 2.1055 3.1645 42 1 8.6647 5.6614 4.8195 43 1 7.7289 4.5079 6.0664 44 1 7.7802 2.1003 4.5225 45 1 6.9653 3.6889 4.1781 46 1 4.0195 0.3784 -0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186831633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:42 Heat of formation + Delta-G solvation = -124.690122 kcal Electronic energy + Delta-G solvation = -28779.935782 eV Core-core repulsion = 24635.782328 eV Total energy + Delta-G solvation = -4144.153455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64405 -41.29191 -39.93488 -39.37231 -37.56058 -36.12884 -34.86263 -34.33175 -31.70464 -30.80741 -29.79171 -28.26996 -27.75113 -27.25266 -26.94150 -25.11956 -23.18513 -22.28590 -21.74799 -20.22595 -19.62927 -19.03698 -18.51042 -17.95553 -17.90125 -17.16034 -16.94070 -16.73915 -16.47225 -16.40408 -15.89064 -15.67915 -15.61732 -15.41719 -15.06199 -14.51737 -14.36011 -14.29598 -13.89809 -13.77261 -13.66555 -13.59020 -13.37499 -13.03126 -12.97248 -12.88418 -12.62228 -12.44461 -12.43950 -12.36614 -12.06766 -11.89986 -11.63675 -11.34290 -11.17074 -11.14418 -10.72160 -10.23260 -9.94297 -9.63959 -8.71827 -8.67138 -6.47627 0.16990 0.42997 1.55432 1.61603 1.65405 1.84270 1.87073 2.33568 2.46853 2.56497 2.65014 2.91287 3.29882 3.53200 3.73574 3.76890 3.90537 3.99359 4.03895 4.17420 4.20547 4.29137 4.35826 4.38522 4.39590 4.40724 4.42240 4.48984 4.52973 4.62888 4.65873 4.68595 4.73615 4.75770 4.83516 4.88153 4.98399 5.01083 5.22591 5.25040 5.31583 5.59561 5.74753 6.09549 6.34030 6.46135 6.53184 6.72987 6.93212 7.06229 7.28364 8.65668 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.002520 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.214976 B =11107.095845 C =11371.643180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.084 3.916 4 C -0.167 4.167 5 C -0.165 4.165 6 C 0.083 3.917 7 O -0.337 6.337 8 C 0.018 3.982 9 C -0.087 4.087 10 C -0.043 4.043 11 C -0.112 4.112 12 C 0.525 3.475 13 O -0.592 6.592 14 N -0.636 5.636 15 C 0.120 3.880 16 C 0.198 3.802 17 O -0.576 6.576 18 C -0.632 4.632 19 H 0.061 0.939 20 C -0.001 4.001 21 N -0.915 5.915 22 Si 1.110 2.890 23 H -0.284 1.284 24 H -0.270 1.270 25 H -0.278 1.278 26 C 0.087 3.913 27 C -0.121 4.121 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.374 0.626 43 H 0.265 0.735 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.682 -3.648 -10.705 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.039 3.961 4 C -0.185 4.185 5 C -0.183 4.183 6 C 0.038 3.962 7 O -0.251 6.251 8 C -0.076 4.076 9 C -0.088 4.088 10 C -0.081 4.081 11 C -0.151 4.151 12 C 0.317 3.683 13 O -0.475 6.475 14 N -0.370 5.370 15 C -0.003 4.003 16 C 0.158 3.842 17 O -0.384 6.384 18 C -0.670 4.670 19 H 0.080 0.920 20 C -0.203 4.203 21 N -0.552 5.552 22 Si 0.932 3.068 23 H -0.209 1.209 24 H -0.195 1.195 25 H -0.204 1.204 26 C -0.036 4.036 27 C -0.139 4.139 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.176 0.824 32 H 0.174 0.826 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.223 0.777 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.773 -3.572 -10.433 21.772 hybrid contribution -0.663 0.051 -1.165 1.341 sum -19.436 -3.520 -11.597 22.905 Atomic orbital electron populations 1.23332 0.76529 1.05500 1.02244 1.86063 1.23368 1.26479 1.89219 1.18962 0.92032 0.85096 1.00009 1.21314 1.01284 0.90882 1.05054 1.21290 0.92396 0.99677 1.04974 1.18945 0.91594 0.85326 1.00358 1.86125 1.36983 1.12953 1.89031 1.23305 0.96220 0.85695 1.02366 1.18962 0.94943 0.90613 1.04252 1.19981 0.89988 1.03327 0.94791 1.21470 0.88972 1.04968 0.99712 1.20982 0.91101 0.74742 0.81490 1.90609 1.71427 1.53643 1.31791 1.50221 1.09456 1.70827 1.06460 1.23271 0.83511 0.99594 0.93880 1.20351 0.91828 0.78907 0.93145 1.86240 1.83482 1.20773 1.47892 1.22449 1.19374 1.32667 0.92473 0.92034 1.27097 0.97970 0.91572 1.03657 1.71011 1.07659 1.41808 1.34726 0.83000 0.73934 0.77427 0.72394 1.20894 1.19485 1.20382 1.24225 1.00618 1.01111 0.77689 1.20245 0.92162 0.97259 1.04252 0.91753 0.91543 0.86583 0.82407 0.82572 0.91578 0.87491 0.91147 0.91486 0.90481 0.87631 0.88891 0.92137 0.88094 0.77711 0.92394 0.88977 0.91049 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.70 10.50 -93.28 -0.98 -7.68 16 3 C 0.08 1.81 6.69 22.49 0.15 1.96 16 4 C -0.17 -2.93 9.03 22.36 0.20 -2.73 16 5 C -0.16 -3.09 9.03 22.36 0.20 -2.89 16 6 C 0.08 2.04 6.66 22.49 0.15 2.19 16 7 O -0.34 -8.58 9.63 -93.39 -0.90 -9.47 16 8 C 0.02 0.29 9.81 113.37 1.11 1.41 16 9 C -0.09 -2.30 5.14 -19.78 -0.10 -2.40 16 10 C -0.04 -1.30 4.35 29.85 0.13 -1.17 16 11 C -0.11 -3.61 5.43 29.85 0.16 -3.45 16 12 C 0.52 21.59 8.06 87.66 0.71 22.30 16 13 O -0.59 -27.78 16.71 -3.03 -0.05 -27.83 16 14 N -0.64 -27.09 3.61 -840.07 -3.03 -30.12 16 15 C 0.12 5.36 8.22 86.48 0.71 6.07 16 16 C 0.20 9.48 1.08 -10.87 -0.01 9.47 16 17 O -0.58 -29.03 13.45 -148.98 -2.00 -31.04 16 18 C -0.63 -32.06 8.56 25.60 0.22 -31.84 16 19 H 0.06 3.09 7.85 -2.91 -0.02 3.07 16 20 C 0.00 -0.06 5.26 84.65 0.45 0.38 16 21 N -0.92 -47.83 12.80 21.45 0.27 -47.55 16 22 Si 1.11 45.21 29.93 68.60 2.05 47.27 16 23 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 25 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 26 C 0.09 3.65 7.05 86.49 0.61 4.26 16 27 C -0.12 -2.94 9.61 22.36 0.21 -2.72 16 28 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 29 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 30 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.16 1.74 6.29 -2.91 -0.02 1.73 16 32 H 0.16 2.01 6.29 -2.91 -0.02 1.99 16 33 H 0.07 0.87 7.66 -2.39 -0.02 0.86 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 36 H 0.07 2.26 7.64 -2.39 -0.02 2.24 16 37 H 0.08 2.31 8.01 -2.39 -0.02 2.29 16 38 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.10 4.18 8.09 -2.39 -0.02 4.16 16 42 H 0.37 18.39 6.95 -74.06 -0.52 17.87 16 43 H 0.26 13.54 5.53 -92.70 -0.51 13.03 16 44 H 0.09 3.78 8.09 -2.39 -0.02 3.76 16 45 H 0.07 2.90 7.80 -2.38 -0.02 2.89 16 46 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -67.24 383.72 2.12 -65.12 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.75 Total: 39.17 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.01 Total: 2.13 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.76 Total: -77.67 kcal Atomic # 8 Polarization: -72.08 SS G_CDS: -3.93 Total: -76.02 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.05 Total: 47.27 kcal Total: -67.24 2.12 -65.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186831633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.572 kcal (2) G-P(sol) polarization free energy of solvation -67.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds