Wall clock time and date at job start Tue Mar 31 2020 18:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35904 * 117.00044 * 2 1 4 4 C 1.38773 * 120.02365 * 179.97438 * 3 2 1 5 5 C 1.38180 * 120.04832 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.94109 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46955 * 90.00654 * 6 5 4 8 8 C 1.50707 * 109.47017 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00011 * 179.97438 * 8 7 6 11 11 C 1.47584 * 134.49657 * 179.97438 * 10 8 7 12 12 C 1.53946 * 86.12025 * 155.36378 * 11 10 8 13 13 O 1.42897 * 113.74068 * 269.15867 * 12 11 10 14 14 C 1.50700 * 113.74246 * 137.95222 * 12 11 10 15 15 H 1.07998 * 119.99659 * 4.91778 * 14 12 11 16 16 C 1.37870 * 120.00275 * 184.91298 * 14 12 11 17 17 N 1.31521 * 119.99939 * 13.83955 * 16 14 12 18 18 Si 1.86793 * 120.00241 * 193.83635 * 16 14 12 19 19 H 1.48503 * 109.47305 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47166 * 299.99995 * 18 16 14 21 21 H 1.48499 * 109.46987 * 59.99962 * 18 16 14 22 22 C 1.47585 * 134.49296 * 0.02562 * 10 8 7 23 23 C 1.38179 * 120.11075 * 0.28446 * 5 4 3 24 24 C 1.38773 * 120.05206 * 359.48471 * 23 5 4 25 25 O 1.35899 * 120.02594 * 180.28120 * 24 23 5 26 26 C 1.42899 * 117.00038 * 180.21113 * 25 24 23 27 27 C 1.38629 * 120.02547 * 0.02580 * 3 2 1 28 28 H 1.08999 * 109.46783 * 299.99844 * 1 2 3 29 29 H 1.08996 * 109.47232 * 59.99745 * 1 2 3 30 30 H 1.09006 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.07996 * 119.97974 * 0.02865 * 4 3 2 32 32 H 1.09002 * 109.47561 * 330.00065 * 6 5 4 33 33 H 1.09004 * 109.47099 * 210.00059 * 6 5 4 34 34 H 1.08992 * 109.47552 * 59.99932 * 7 6 5 35 35 H 1.08994 * 109.47209 * 299.99398 * 7 6 5 36 36 H 1.09003 * 113.76727 * 41.05948 * 11 10 8 37 37 H 1.09000 * 113.86995 * 269.68290 * 11 10 8 38 38 H 0.96698 * 114.00098 * 171.44601 * 13 12 11 39 39 H 0.97007 * 119.99483 * 5.87247 * 17 16 14 40 40 H 1.08994 * 113.77423 * 90.33340 * 22 10 8 41 41 H 1.09010 * 113.76672 * 318.93187 * 22 10 8 42 42 H 1.07998 * 119.97172 * 179.72562 * 23 5 4 43 43 H 1.08998 * 109.47073 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.46727 * 299.99821 * 26 25 24 45 45 H 1.08996 * 109.47186 * 60.00051 * 26 25 24 46 46 H 1.08001 * 120.05700 * 359.95664 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4318 1.2841 0.0005 5 6 4.0596 2.5150 0.0000 6 6 5.5646 2.5917 0.0000 7 6 6.0740 2.6171 -1.4425 8 6 7.5790 2.6944 -1.4425 9 8 8.1846 2.7256 -0.3922 10 7 8.2521 2.7279 -2.6097 11 6 9.6790 2.8013 -2.9791 12 6 9.2625 2.1371 -4.3040 13 8 9.3228 0.7097 -4.2758 14 6 9.9325 2.7297 -5.5168 15 1 10.6904 3.4898 -5.3976 16 6 9.5782 2.3014 -6.7785 17 7 8.4853 1.5897 -6.9485 18 14 10.6501 2.7320 -8.2464 19 1 10.0544 2.1581 -9.4797 20 1 10.7367 4.2085 -8.3799 21 1 12.0110 2.1723 -8.0466 22 6 7.8580 2.7068 -4.0318 23 6 3.3098 3.6757 0.0049 24 6 1.9238 3.6076 -0.0005 25 8 1.1869 4.7495 -0.0015 26 6 -0.2347 4.6042 -0.0024 27 6 1.2915 2.3739 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0200 0.3784 0.0005 32 1 5.9728 1.7216 0.5142 33 1 5.8822 3.4992 0.5135 34 1 5.6659 3.4872 -1.9567 35 1 5.7565 1.7097 -1.9560 36 1 10.3257 2.1794 -2.3601 37 1 10.0526 3.8186 -3.0960 38 1 8.9403 0.2844 -5.0555 39 1 7.8843 1.4381 -6.2023 40 1 7.6955 3.6970 -4.4575 41 1 7.0503 2.0092 -4.2536 42 1 3.8029 4.6365 0.0089 43 1 -0.7006 5.5895 -0.0027 44 1 -0.5432 4.0557 -0.8925 45 1 -0.5445 4.0564 0.8875 46 1 0.2129 2.3189 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186838087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:54 Heat of formation + Delta-G solvation = -105.937807 kcal Electronic energy + Delta-G solvation = -28369.733629 eV Core-core repulsion = 24226.393336 eV Total energy + Delta-G solvation = -4143.340293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80553 -39.69604 -39.07604 -37.92540 -37.09987 -34.27412 -33.32037 -32.38311 -30.54187 -29.97685 -28.58943 -27.96727 -26.89918 -25.52990 -25.24021 -23.74156 -22.63869 -21.02744 -20.19843 -18.52837 -18.44220 -17.84897 -17.27159 -16.40150 -16.33627 -16.25456 -16.20444 -15.78797 -15.44288 -15.29413 -15.01334 -14.69202 -14.18885 -13.94275 -13.73953 -13.55660 -13.14140 -13.09716 -12.55896 -12.50934 -12.42430 -12.14499 -12.01752 -11.91551 -11.91162 -11.59683 -11.44992 -11.32068 -11.12891 -10.93261 -10.90985 -10.64135 -10.54492 -10.21954 -9.49625 -9.32502 -8.84084 -8.76320 -8.40316 -8.19719 -7.88215 -6.68580 -4.47807 1.08641 1.29059 2.92519 2.98289 3.13551 3.30772 3.34452 3.39891 3.52886 3.59315 4.32445 4.45911 4.58655 4.67223 4.75858 4.76162 4.78426 4.84296 4.92773 4.96996 5.04910 5.10899 5.11997 5.17997 5.20302 5.31697 5.42532 5.52662 5.69502 5.71947 5.94918 6.01323 6.02814 6.06642 6.17265 6.19986 6.36013 6.40126 6.43755 6.48694 6.52056 6.79294 6.89613 7.24027 7.65972 8.09294 8.36890 8.45073 8.67328 8.84604 9.22498 10.62986 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002302 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.818882 B =12162.287877 C =12424.736651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.166 3.834 4 C -0.182 4.182 5 C 0.000 4.000 6 C -0.064 4.064 7 C -0.128 4.128 8 C 0.529 3.471 9 O -0.564 6.564 10 N -0.634 5.634 11 C 0.122 3.878 12 C 0.216 3.784 13 O -0.566 6.566 14 C -0.617 4.617 15 H 0.065 0.935 16 C 0.037 3.963 17 N -0.898 5.898 18 Si 1.067 2.933 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.070 3.930 23 C -0.183 4.183 24 C 0.165 3.835 25 O -0.314 6.314 26 C 0.027 3.973 27 C -0.302 4.302 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.375 0.625 39 H 0.268 0.732 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.133 0.867 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.079 2.049 11.298 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.120 3.880 4 C -0.201 4.201 5 C 0.000 4.000 6 C -0.101 4.101 7 C -0.168 4.168 8 C 0.318 3.682 9 O -0.444 6.444 10 N -0.367 5.367 11 C 0.000 4.000 12 C 0.175 3.825 13 O -0.373 6.373 14 C -0.655 4.655 15 H 0.083 0.917 16 C -0.169 4.169 17 N -0.534 5.534 18 Si 0.893 3.107 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.053 4.053 23 C -0.202 4.202 24 C 0.119 3.881 25 O -0.227 6.227 26 C -0.068 4.068 27 C -0.322 4.322 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.151 0.849 43 H 0.119 0.881 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.287 1.925 10.990 21.422 hybrid contribution -1.243 0.218 1.022 1.624 sum -19.530 2.143 12.012 23.028 Atomic orbital electron populations 1.23055 0.78515 1.04020 1.01183 1.86108 1.21305 1.26823 1.88387 1.18695 0.91987 0.83507 0.93802 1.20271 0.91064 0.98530 1.10231 1.19489 0.95682 0.91237 0.93600 1.20368 0.88646 1.04912 0.96213 1.21530 0.92534 1.04659 0.98028 1.20203 0.89364 0.76213 0.82375 1.90638 1.70547 1.52492 1.30716 1.50189 1.09987 1.70877 1.05674 1.23276 0.82374 1.00094 0.94221 1.20151 0.89851 0.79622 0.92913 1.86253 1.84492 1.19694 1.46861 1.22228 1.25616 1.26254 0.91386 0.91685 1.25978 0.97092 0.92972 1.00884 1.70947 1.10004 1.37245 1.35232 0.83586 0.75460 0.76327 0.75309 1.20577 1.21129 1.21004 1.24472 1.02074 1.01451 0.77344 1.20247 0.90158 0.99333 1.10432 1.18688 0.91099 0.84375 0.93894 1.86099 1.19066 1.29090 1.88429 1.23053 0.78620 1.03888 1.01212 1.21187 1.00278 0.92043 1.18672 0.92800 0.92698 0.88088 0.84810 0.89612 0.89686 0.89045 0.88930 0.91059 0.89408 0.77637 0.92004 0.89513 0.91633 0.84883 0.88113 0.92687 0.92793 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.46 10.50 -19.44 -0.20 -3.66 16 3 C 0.17 1.97 6.68 -39.24 -0.26 1.71 16 4 C -0.18 -2.30 9.64 -39.41 -0.38 -2.68 16 5 C 0.00 0.00 5.13 -104.67 -0.54 -0.53 16 6 C -0.06 -0.86 4.63 -27.89 -0.13 -0.99 16 7 C -0.13 -1.92 5.43 -27.88 -0.15 -2.08 16 8 C 0.53 10.36 8.06 -10.98 -0.09 10.27 16 9 O -0.56 -12.52 16.71 5.56 0.09 -12.43 16 10 N -0.63 -13.13 3.61 -178.25 -0.64 -13.77 16 11 C 0.12 2.67 8.22 -2.97 -0.02 2.64 16 12 C 0.22 5.07 1.08 -90.83 -0.10 4.98 16 13 O -0.57 -13.94 13.45 -35.23 -0.47 -14.41 16 14 C -0.62 -15.60 8.56 -34.44 -0.29 -15.89 16 15 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 16 C 0.04 0.93 5.26 -17.82 -0.09 0.83 16 17 N -0.90 -23.52 12.80 55.43 0.71 -22.81 16 18 Si 1.07 22.72 29.93 -169.99 -5.09 17.63 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 20 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 C 0.07 1.45 7.05 -2.95 -0.02 1.43 16 23 C -0.18 -2.26 9.63 -39.41 -0.38 -2.64 16 24 C 0.16 1.94 6.68 -39.24 -0.26 1.68 16 25 O -0.31 -3.38 10.50 -19.42 -0.20 -3.58 16 26 C 0.03 0.18 9.81 101.05 0.99 1.17 16 27 C -0.30 -3.23 8.02 -39.29 -0.32 -3.54 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.09 1.19 8.04 -51.93 -0.42 0.78 16 33 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 38 H 0.37 9.00 6.95 45.56 0.32 9.31 16 39 H 0.27 6.81 5.53 -40.82 -0.23 6.59 16 40 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 41 H 0.07 1.32 7.80 -51.92 -0.41 0.91 16 42 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 45 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 46 H 0.13 1.06 4.54 -52.49 -0.24 0.82 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -31.20 384.92 -7.05 -38.25 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.99 Total: 11.46 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.05 Total: -2.47 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.07 Total: -36.58 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.79 Total: -34.09 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.09 Total: 17.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.20 -7.05 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186838087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.690 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds