Wall clock time and date at job start Tue Mar 31 2020 18:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35904 * 117.00044 * 2 1 4 4 C 1.38773 * 120.02365 * 179.97438 * 3 2 1 5 5 C 1.38180 * 120.04832 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.94109 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46955 * 90.00654 * 6 5 4 8 8 C 1.50707 * 109.47017 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00011 * 179.97438 * 8 7 6 11 11 C 1.47584 * 134.49657 * 179.97438 * 10 8 7 12 12 C 1.53946 * 86.12025 * 155.36378 * 11 10 8 13 13 O 1.42897 * 113.74068 * 269.15867 * 12 11 10 14 14 C 1.50700 * 113.74246 * 137.95222 * 12 11 10 15 15 H 1.07998 * 119.99659 * 4.91778 * 14 12 11 16 16 C 1.37870 * 120.00275 * 184.91298 * 14 12 11 17 17 N 1.31521 * 119.99939 * 13.83955 * 16 14 12 18 18 Si 1.86793 * 120.00241 * 193.83635 * 16 14 12 19 19 H 1.48503 * 109.47305 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47166 * 299.99995 * 18 16 14 21 21 H 1.48499 * 109.46987 * 59.99962 * 18 16 14 22 22 C 1.47585 * 134.49296 * 0.02562 * 10 8 7 23 23 C 1.38179 * 120.11075 * 0.28446 * 5 4 3 24 24 C 1.38773 * 120.05206 * 359.48471 * 23 5 4 25 25 O 1.35899 * 120.02594 * 180.28120 * 24 23 5 26 26 C 1.42899 * 117.00038 * 180.21113 * 25 24 23 27 27 C 1.38629 * 120.02547 * 0.02580 * 3 2 1 28 28 H 1.08999 * 109.46783 * 299.99844 * 1 2 3 29 29 H 1.08996 * 109.47232 * 59.99745 * 1 2 3 30 30 H 1.09006 * 109.47171 * 179.97438 * 1 2 3 31 31 H 1.07996 * 119.97974 * 0.02865 * 4 3 2 32 32 H 1.09002 * 109.47561 * 330.00065 * 6 5 4 33 33 H 1.09004 * 109.47099 * 210.00059 * 6 5 4 34 34 H 1.08992 * 109.47552 * 59.99932 * 7 6 5 35 35 H 1.08994 * 109.47209 * 299.99398 * 7 6 5 36 36 H 1.09003 * 113.76727 * 41.05948 * 11 10 8 37 37 H 1.09000 * 113.86995 * 269.68290 * 11 10 8 38 38 H 0.96698 * 114.00098 * 171.44601 * 13 12 11 39 39 H 0.97007 * 119.99483 * 5.87247 * 17 16 14 40 40 H 1.08994 * 113.77423 * 90.33340 * 22 10 8 41 41 H 1.09010 * 113.76672 * 318.93187 * 22 10 8 42 42 H 1.07998 * 119.97172 * 179.72562 * 23 5 4 43 43 H 1.08998 * 109.47073 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.46727 * 299.99821 * 26 25 24 45 45 H 1.08996 * 109.47186 * 60.00051 * 26 25 24 46 46 H 1.08001 * 120.05700 * 359.95664 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4318 1.2841 0.0005 5 6 4.0596 2.5150 0.0000 6 6 5.5646 2.5917 0.0000 7 6 6.0740 2.6171 -1.4425 8 6 7.5790 2.6944 -1.4425 9 8 8.1846 2.7256 -0.3922 10 7 8.2521 2.7279 -2.6097 11 6 9.6790 2.8013 -2.9791 12 6 9.2625 2.1371 -4.3040 13 8 9.3228 0.7097 -4.2758 14 6 9.9325 2.7297 -5.5168 15 1 10.6904 3.4898 -5.3976 16 6 9.5782 2.3014 -6.7785 17 7 8.4853 1.5897 -6.9485 18 14 10.6501 2.7320 -8.2464 19 1 10.0544 2.1581 -9.4797 20 1 10.7367 4.2085 -8.3799 21 1 12.0110 2.1723 -8.0466 22 6 7.8580 2.7068 -4.0318 23 6 3.3098 3.6757 0.0049 24 6 1.9238 3.6076 -0.0005 25 8 1.1869 4.7495 -0.0015 26 6 -0.2347 4.6042 -0.0024 27 6 1.2915 2.3739 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0200 0.3784 0.0005 32 1 5.9728 1.7216 0.5142 33 1 5.8822 3.4992 0.5135 34 1 5.6659 3.4872 -1.9567 35 1 5.7565 1.7097 -1.9560 36 1 10.3257 2.1794 -2.3601 37 1 10.0526 3.8186 -3.0960 38 1 8.9403 0.2844 -5.0555 39 1 7.8843 1.4381 -6.2023 40 1 7.6955 3.6970 -4.4575 41 1 7.0503 2.0092 -4.2536 42 1 3.8029 4.6365 0.0089 43 1 -0.7006 5.5895 -0.0027 44 1 -0.5432 4.0557 -0.8925 45 1 -0.5445 4.0564 0.8875 46 1 0.2129 2.3189 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186838087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:53 Heat of formation + Delta-G solvation = -126.821820 kcal Electronic energy + Delta-G solvation = -28370.639228 eV Core-core repulsion = 24226.393336 eV Total energy + Delta-G solvation = -4144.245892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65919 -41.33639 -39.81776 -39.46473 -38.13668 -36.11788 -34.40979 -34.32642 -31.32850 -31.23237 -29.84763 -28.79129 -27.49999 -27.24184 -26.93179 -25.05463 -23.48046 -22.20634 -21.65537 -20.21542 -19.63196 -19.32419 -18.03049 -17.98116 -17.28851 -17.13265 -17.04522 -16.91256 -16.82216 -16.42740 -16.42232 -15.81166 -15.67846 -15.61300 -15.00361 -14.56278 -14.43302 -14.25848 -13.97036 -13.79927 -13.58892 -13.41162 -13.20092 -13.09886 -12.96397 -12.73503 -12.60776 -12.50077 -12.36735 -12.23009 -12.19013 -12.04434 -11.89997 -11.44996 -11.16137 -11.11983 -10.71507 -10.21778 -9.66706 -9.60846 -9.06086 -8.66617 -6.47080 0.19373 0.40162 1.56178 1.61815 1.65591 1.84558 1.87169 2.23423 2.30460 2.56747 2.62736 2.91880 3.29269 3.52868 3.77851 3.89008 3.91218 3.97807 4.02798 4.04966 4.18612 4.29206 4.33007 4.34528 4.35229 4.38101 4.40841 4.42690 4.50929 4.53485 4.64294 4.67538 4.68810 4.70025 4.83886 4.91619 4.99877 5.05564 5.16262 5.20492 5.54166 5.55357 5.75520 6.10096 6.16150 6.46815 6.46974 6.74285 6.93911 7.06674 7.28761 8.66454 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002302 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.818882 B =12162.287877 C =12424.736651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.160 3.840 4 C -0.199 4.199 5 C -0.003 4.003 6 C -0.055 4.055 7 C -0.117 4.117 8 C 0.524 3.476 9 O -0.592 6.592 10 N -0.636 5.636 11 C 0.120 3.880 12 C 0.197 3.803 13 O -0.577 6.577 14 C -0.632 4.632 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.915 5.915 18 Si 1.110 2.890 19 H -0.284 1.284 20 H -0.270 1.270 21 H -0.278 1.278 22 C 0.086 3.914 23 C -0.196 4.196 24 C 0.161 3.839 25 O -0.330 6.330 26 C 0.016 3.984 27 C -0.296 4.296 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.374 0.626 39 H 0.265 0.735 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.136 0.864 43 H 0.121 0.879 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.100 2.657 11.114 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.114 3.886 4 C -0.218 4.218 5 C -0.003 4.003 6 C -0.092 4.092 7 C -0.156 4.156 8 C 0.316 3.684 9 O -0.474 6.474 10 N -0.369 5.369 11 C -0.002 4.002 12 C 0.156 3.844 13 O -0.384 6.384 14 C -0.670 4.670 15 H 0.079 0.921 16 C -0.203 4.203 17 N -0.553 5.553 18 Si 0.932 3.068 19 H -0.209 1.209 20 H -0.195 1.195 21 H -0.204 1.204 22 C -0.037 4.037 23 C -0.215 4.215 24 C 0.115 3.885 25 O -0.243 6.243 26 C -0.078 4.078 27 C -0.315 4.315 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.223 0.777 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.153 0.847 43 H 0.139 0.861 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.335 2.539 10.826 23.177 hybrid contribution -0.705 0.006 1.140 1.340 sum -21.040 2.546 11.966 24.338 Atomic orbital electron populations 1.23388 0.76277 1.05799 1.02326 1.86090 1.23694 1.26515 1.88218 1.18790 0.91920 0.84330 0.93556 1.20359 0.91903 0.98417 1.11154 1.19291 0.94826 0.91561 0.94609 1.20237 0.89530 1.04438 0.95023 1.21525 0.88943 1.05688 0.99444 1.20986 0.91038 0.74973 0.81398 1.90621 1.71590 1.53642 1.31559 1.50217 1.09433 1.71219 1.06064 1.23263 0.83206 1.00421 0.93345 1.20361 0.91742 0.79065 0.93197 1.86238 1.84739 1.20558 1.46867 1.22452 1.25777 1.26428 0.92311 0.92069 1.27077 0.97478 0.92523 1.03215 1.71013 1.10663 1.38268 1.35310 0.83007 0.74229 0.77004 0.72573 1.20948 1.19483 1.20407 1.24226 1.00660 1.01571 0.77225 1.20351 0.90917 0.99266 1.10993 1.18785 0.91106 0.85134 0.93509 1.86084 1.21197 1.28855 1.88206 1.23389 0.76424 1.05697 1.02299 1.21409 1.01602 0.91127 1.17395 0.91417 0.91675 0.86190 0.85109 0.90425 0.89896 0.87377 0.88190 0.92090 0.88147 0.77702 0.92348 0.88991 0.90849 0.84652 0.86109 0.91707 0.91493 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.85 10.50 -92.47 -0.97 -7.82 16 3 C 0.16 3.62 6.68 22.49 0.15 3.77 16 4 C -0.20 -4.97 9.64 22.38 0.22 -4.75 16 5 C 0.00 -0.06 5.13 -19.89 -0.10 -0.17 16 6 C -0.05 -1.47 4.63 29.85 0.14 -1.33 16 7 C -0.12 -3.43 5.43 29.85 0.16 -3.27 16 8 C 0.52 20.40 8.06 87.66 0.71 21.11 16 9 O -0.59 -26.44 16.71 -3.03 -0.05 -26.49 16 10 N -0.64 -26.13 3.61 -840.07 -3.03 -29.16 16 11 C 0.12 5.25 8.22 86.48 0.71 5.96 16 12 C 0.20 9.27 1.08 -10.87 -0.01 9.26 16 13 O -0.58 -28.65 13.45 -148.98 -2.00 -30.65 16 14 C -0.63 -31.78 8.56 25.60 0.22 -31.56 16 15 H 0.06 3.05 7.85 -2.91 -0.02 3.03 16 16 C 0.00 -0.06 5.26 84.65 0.45 0.39 16 17 N -0.92 -47.62 12.80 21.45 0.27 -47.34 16 18 Si 1.11 45.05 29.93 68.60 2.05 47.10 16 19 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 22 C 0.09 3.54 7.05 86.49 0.61 4.15 16 23 C -0.20 -4.71 9.63 22.38 0.22 -4.49 16 24 C 0.16 3.53 6.68 22.49 0.15 3.68 16 25 O -0.33 -6.50 10.50 -92.41 -0.97 -7.47 16 26 C 0.02 0.16 9.81 113.37 1.11 1.28 16 27 C -0.30 -5.73 8.02 22.46 0.18 -5.55 16 28 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 30 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.08 2.19 8.04 -2.39 -0.02 2.17 16 33 H 0.08 2.24 8.04 -2.39 -0.02 2.22 16 34 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.10 4.07 8.09 -2.39 -0.02 4.05 16 38 H 0.37 18.20 6.95 -74.06 -0.52 17.69 16 39 H 0.27 13.45 5.53 -92.70 -0.51 12.94 16 40 H 0.09 3.69 8.09 -2.39 -0.02 3.67 16 41 H 0.07 2.89 7.80 -2.38 -0.02 2.87 16 42 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 43 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.54 7.66 -2.38 -0.02 0.52 16 45 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 46 H 0.16 2.05 4.54 -2.91 -0.01 2.04 16 Total: -1.00 -65.92 384.92 2.06 -63.86 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.74 Total: 38.21 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.02 Total: -0.23 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -2.76 Total: -76.50 kcal Atomic # 8 Polarization: -68.44 SS G_CDS: -4.00 Total: -72.43 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.05 Total: 47.10 kcal Total: -65.92 2.06 -63.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186838087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.960 kcal (2) G-P(sol) polarization free energy of solvation -65.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds