Wall clock time and date at job start Tue Mar 31 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36004 * 116.99929 * 2 1 4 4 C 1.38564 * 120.06838 * 0.02562 * 3 2 1 5 5 C 1.38251 * 119.99587 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14392 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.92185 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46955 * 90.00564 * 7 6 5 9 9 C 1.50707 * 109.47017 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99658 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.47584 * 134.49657 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36378 * 12 11 9 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49296 * 0.02562 * 11 9 8 24 24 C 1.38237 * 120.15004 * 0.23497 * 6 5 4 25 25 C 1.38570 * 119.99814 * 359.49190 * 24 6 5 26 26 O 1.35991 * 120.07400 * 180.25287 * 25 24 6 27 27 C 1.42898 * 117.00000 * 0.27450 * 26 25 24 28 28 H 1.09001 * 109.47141 * 59.99796 * 1 2 3 29 29 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47008 * 299.99680 * 1 2 3 31 31 H 1.08001 * 120.00520 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92628 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47561 * 329.99976 * 7 6 5 34 34 H 1.09004 * 109.47099 * 209.99970 * 7 6 5 35 35 H 1.08992 * 109.47552 * 59.99932 * 8 7 6 36 36 H 1.08994 * 109.47209 * 299.99398 * 8 7 6 37 37 H 1.09003 * 113.76727 * 41.05948 * 12 11 9 38 38 H 1.09000 * 113.86995 * 269.68290 * 12 11 9 39 39 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 40 40 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 41 41 H 1.08994 * 113.77423 * 90.33340 * 23 11 9 42 42 H 1.09010 * 113.76672 * 318.93187 * 23 11 9 43 43 H 1.07997 * 120.00353 * 179.73868 * 24 6 5 44 44 H 1.08993 * 109.47019 * 299.99624 * 27 26 25 45 45 H 1.08999 * 109.46972 * 60.00148 * 27 26 25 46 46 H 1.09003 * 109.47232 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6058 0.0011 6 6 3.3028 3.6799 0.0005 7 6 3.9835 5.0244 0.0005 8 6 4.2145 5.4790 1.4430 9 6 4.8957 6.8234 1.4431 10 8 5.1690 7.3646 0.3927 11 7 5.2003 7.4245 2.6102 12 6 5.8466 8.6988 2.9797 13 6 5.0715 8.5870 4.3051 14 8 3.7913 9.2212 4.2782 15 6 5.8859 8.9586 5.5174 16 1 6.8880 9.3429 5.3976 17 6 5.3517 8.8079 6.7794 18 7 4.2579 8.0977 6.9501 19 14 6.1813 9.6124 8.2470 20 1 5.4160 9.3003 9.4808 21 1 7.5660 9.0926 8.3793 22 1 6.2217 11.0834 8.0478 23 6 5.0223 7.0723 4.0323 24 6 4.0602 2.5235 -0.0054 25 6 3.4359 1.2864 -0.0003 26 8 4.1795 0.1478 -0.0009 27 6 5.6003 0.3009 -0.0010 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2145 2.3196 0.0014 32 1 1.3341 4.5116 0.0019 33 1 3.3534 5.7507 -0.5129 34 1 4.9414 4.9467 -0.5137 35 1 4.8446 4.7529 1.9564 36 1 3.2566 5.5568 1.9573 37 1 5.5399 9.5424 2.3612 38 1 6.9280 8.6275 3.0957 39 1 3.2480 9.0438 5.0582 40 1 3.8750 7.6101 6.2040 41 1 5.8617 6.5219 4.4571 42 1 4.0571 6.6169 4.2547 43 1 5.1385 2.5842 -0.0101 44 1 5.9064 0.8510 -0.8907 45 1 5.9066 0.8501 0.8892 46 1 6.0716 -0.6820 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186844735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:58 Heat of formation + Delta-G solvation = -104.011078 kcal Electronic energy + Delta-G solvation = -28457.556621 eV Core-core repulsion = 24314.299877 eV Total energy + Delta-G solvation = -4143.256744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78128 -39.73412 -38.64180 -37.97243 -37.21189 -34.31198 -33.36416 -32.41490 -30.52964 -30.02373 -28.56126 -27.47586 -27.23376 -25.55592 -25.15485 -23.68317 -22.38027 -21.24053 -20.22941 -18.61527 -18.48495 -17.91510 -17.26232 -16.96455 -16.40221 -16.27499 -15.51522 -15.45940 -15.38689 -14.95648 -14.78755 -14.67906 -14.36163 -14.03437 -13.91690 -13.60555 -13.12630 -13.09062 -12.59321 -12.51654 -12.35262 -12.22364 -12.07274 -11.96124 -11.62490 -11.41195 -11.39625 -11.19302 -11.15817 -10.96119 -10.92976 -10.91528 -10.57831 -10.24185 -9.52882 -9.36026 -8.89200 -8.85107 -8.44374 -7.95711 -7.89624 -6.71490 -4.50897 1.08839 1.24373 3.04901 3.06818 3.08994 3.28550 3.32103 3.36996 3.50789 3.57285 4.29950 4.51766 4.57381 4.73791 4.77772 4.85008 4.89973 4.92815 4.96481 5.04789 5.08625 5.14765 5.21126 5.24889 5.25934 5.29452 5.34669 5.48112 5.64640 5.68242 5.86628 5.97145 6.02715 6.08525 6.13371 6.16129 6.31959 6.36219 6.47337 6.48161 6.51976 6.75502 6.82933 7.37168 7.62670 8.06255 8.32808 8.41945 8.63120 8.80984 9.19427 10.60023 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002311 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.653721 B =12115.309793 C =12462.236016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.091 3.909 4 C -0.169 4.169 5 C -0.112 4.112 6 C -0.073 4.073 7 C -0.060 4.060 8 C -0.127 4.127 9 C 0.528 3.472 10 O -0.564 6.564 11 N -0.634 5.634 12 C 0.122 3.878 13 C 0.216 3.784 14 O -0.566 6.566 15 C -0.617 4.617 16 H 0.065 0.935 17 C 0.037 3.963 18 N -0.897 5.897 19 Si 1.066 2.934 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.070 3.930 24 C -0.168 4.168 25 C 0.100 3.900 26 O -0.308 6.308 27 C 0.026 3.974 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.375 0.625 40 H 0.268 0.732 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.135 0.865 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 -15.329 -11.308 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.046 3.954 4 C -0.188 4.188 5 C -0.130 4.130 6 C -0.074 4.074 7 C -0.098 4.098 8 C -0.167 4.167 9 C 0.317 3.683 10 O -0.444 6.444 11 N -0.367 5.367 12 C 0.000 4.000 13 C 0.175 3.825 14 O -0.373 6.373 15 C -0.655 4.655 16 H 0.083 0.917 17 C -0.169 4.169 18 N -0.534 5.534 19 Si 0.893 3.107 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.053 4.053 24 C -0.186 4.186 25 C 0.055 3.945 26 O -0.222 6.222 27 C -0.070 4.070 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.153 0.847 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.970 -15.069 -11.001 19.075 hybrid contribution -0.047 -0.324 -1.019 1.070 sum -4.018 -15.393 -12.020 19.939 Atomic orbital electron populations 1.23051 0.78701 1.03853 1.01246 1.86158 1.20902 1.26009 1.89221 1.18229 0.89114 0.85191 1.02891 1.21053 0.99900 0.91436 1.06383 1.20817 0.93901 0.97197 1.01068 1.19656 0.93391 0.94692 0.99625 1.20291 1.01326 0.92385 0.95787 1.21548 1.02139 0.94701 0.98335 1.20246 0.79167 0.86485 0.82363 1.90637 1.56498 1.66572 1.30734 1.50204 1.58399 1.22454 1.05685 1.23278 0.97303 0.85171 0.94237 1.20147 0.82749 0.86698 0.92911 1.86252 1.29316 1.74891 1.46852 1.22226 1.02890 1.49022 0.91380 0.91681 1.25982 0.95506 0.94532 1.00889 1.70951 1.20677 1.26539 1.35219 0.83585 0.75455 0.76346 0.75309 1.20551 1.21120 1.20990 1.24472 1.00696 1.02841 0.77330 1.20989 1.00410 0.90519 1.06724 1.18213 0.88223 0.86033 1.02048 1.86152 1.18678 1.28281 1.89096 1.23076 0.78625 1.03813 1.01450 0.92792 0.88321 0.92668 0.84760 0.85339 0.90001 0.90318 0.89325 0.89057 0.91062 0.89414 0.77628 0.92026 0.89533 0.91650 0.84685 0.92671 0.92541 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.67 10.28 -34.25 -0.35 -4.03 16 3 C 0.09 1.12 6.70 -39.12 -0.26 0.86 16 4 C -0.17 -1.81 9.04 -39.46 -0.36 -2.17 16 5 C -0.11 -1.25 9.69 -39.57 -0.38 -1.64 16 6 C -0.07 -0.88 5.13 -104.62 -0.54 -1.42 16 7 C -0.06 -0.79 4.63 -27.89 -0.13 -0.92 16 8 C -0.13 -1.87 5.43 -27.88 -0.15 -2.02 16 9 C 0.53 10.16 8.06 -10.98 -0.09 10.07 16 10 O -0.56 -12.37 16.71 5.56 0.09 -12.28 16 11 N -0.63 -12.93 3.61 -178.25 -0.64 -13.57 16 12 C 0.12 2.63 8.22 -2.97 -0.02 2.60 16 13 C 0.22 5.02 1.08 -90.83 -0.10 4.92 16 14 O -0.57 -13.77 13.45 -35.23 -0.47 -14.25 16 15 C -0.62 -15.46 8.56 -34.44 -0.29 -15.75 16 16 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 17 C 0.04 0.92 5.26 -17.82 -0.09 0.83 16 18 N -0.90 -23.30 12.80 55.43 0.71 -22.59 16 19 Si 1.07 22.51 29.93 -169.99 -5.09 17.43 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 23 C 0.07 1.43 7.05 -2.95 -0.02 1.41 16 24 C -0.17 -1.97 8.69 -39.46 -0.34 -2.31 16 25 C 0.10 1.27 6.70 -39.12 -0.26 1.01 16 26 O -0.31 -3.80 10.28 -34.21 -0.35 -4.15 16 27 C 0.03 0.21 9.81 101.05 0.99 1.20 16 28 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 31 H 0.13 1.09 6.30 -52.49 -0.33 0.76 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 34 H 0.08 1.04 8.04 -51.93 -0.42 0.63 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 39 H 0.37 8.89 6.95 45.56 0.32 9.21 16 40 H 0.27 6.74 5.53 -40.82 -0.23 6.51 16 41 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 42 H 0.07 1.29 7.80 -51.92 -0.41 0.89 16 43 H 0.14 1.36 6.30 -52.49 -0.33 1.03 16 44 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 45 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -31.39 384.67 -7.36 -38.75 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.99 Total: 11.01 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.06 Total: -2.13 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.07 Total: -36.16 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.09 Total: -34.70 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.09 Total: 17.43 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.39 -7.36 -38.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186844735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.262 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds