Wall clock time and date at job start Tue Mar 31 2020 18:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36004 * 116.99929 * 2 1 4 4 C 1.38564 * 120.06838 * 0.02562 * 3 2 1 5 5 C 1.38251 * 119.99587 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14392 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.92185 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46955 * 90.00564 * 7 6 5 9 9 C 1.50707 * 109.47017 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99658 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.47584 * 134.49657 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36378 * 12 11 9 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49296 * 0.02562 * 11 9 8 24 24 C 1.38237 * 120.15004 * 0.23497 * 6 5 4 25 25 C 1.38570 * 119.99814 * 359.49190 * 24 6 5 26 26 O 1.35991 * 120.07400 * 180.25287 * 25 24 6 27 27 C 1.42898 * 117.00000 * 0.27450 * 26 25 24 28 28 H 1.09001 * 109.47141 * 59.99796 * 1 2 3 29 29 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47008 * 299.99680 * 1 2 3 31 31 H 1.08001 * 120.00520 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.92628 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47561 * 329.99976 * 7 6 5 34 34 H 1.09004 * 109.47099 * 209.99970 * 7 6 5 35 35 H 1.08992 * 109.47552 * 59.99932 * 8 7 6 36 36 H 1.08994 * 109.47209 * 299.99398 * 8 7 6 37 37 H 1.09003 * 113.76727 * 41.05948 * 12 11 9 38 38 H 1.09000 * 113.86995 * 269.68290 * 12 11 9 39 39 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 40 40 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 41 41 H 1.08994 * 113.77423 * 90.33340 * 23 11 9 42 42 H 1.09010 * 113.76672 * 318.93187 * 23 11 9 43 43 H 1.07997 * 120.00353 * 179.73868 * 24 6 5 44 44 H 1.08993 * 109.47019 * 299.99624 * 27 26 25 45 45 H 1.08999 * 109.46972 * 60.00148 * 27 26 25 46 46 H 1.09003 * 109.47232 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6058 0.0011 6 6 3.3028 3.6799 0.0005 7 6 3.9835 5.0244 0.0005 8 6 4.2145 5.4790 1.4430 9 6 4.8957 6.8234 1.4431 10 8 5.1690 7.3646 0.3927 11 7 5.2003 7.4245 2.6102 12 6 5.8466 8.6988 2.9797 13 6 5.0715 8.5870 4.3051 14 8 3.7913 9.2212 4.2782 15 6 5.8859 8.9586 5.5174 16 1 6.8880 9.3429 5.3976 17 6 5.3517 8.8079 6.7794 18 7 4.2579 8.0977 6.9501 19 14 6.1813 9.6124 8.2470 20 1 5.4160 9.3003 9.4808 21 1 7.5660 9.0926 8.3793 22 1 6.2217 11.0834 8.0478 23 6 5.0223 7.0723 4.0323 24 6 4.0602 2.5235 -0.0054 25 6 3.4359 1.2864 -0.0003 26 8 4.1795 0.1478 -0.0009 27 6 5.6003 0.3009 -0.0010 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2145 2.3196 0.0014 32 1 1.3341 4.5116 0.0019 33 1 3.3534 5.7507 -0.5129 34 1 4.9414 4.9467 -0.5137 35 1 4.8446 4.7529 1.9564 36 1 3.2566 5.5568 1.9573 37 1 5.5399 9.5424 2.3612 38 1 6.9280 8.6275 3.0957 39 1 3.2480 9.0438 5.0582 40 1 3.8750 7.6101 6.2040 41 1 5.8617 6.5219 4.4571 42 1 4.0571 6.6169 4.2547 43 1 5.1385 2.5842 -0.0101 44 1 5.9064 0.8510 -0.8907 45 1 5.9066 0.8501 0.8892 46 1 6.0716 -0.6820 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186844735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:57 Heat of formation + Delta-G solvation = -124.420995 kcal Electronic energy + Delta-G solvation = -28458.441661 eV Core-core repulsion = 24314.299877 eV Total energy + Delta-G solvation = -4144.141784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64712 -41.33689 -39.49294 -39.40077 -38.25616 -36.12372 -34.44023 -34.33300 -31.35497 -31.20613 -29.89013 -28.16747 -28.09245 -27.24540 -26.79605 -24.90738 -23.18386 -22.34140 -21.77367 -20.22036 -19.62697 -19.41246 -18.25082 -17.92273 -17.70848 -17.13867 -17.01006 -16.93121 -16.47079 -16.15626 -15.88425 -15.72934 -15.63249 -15.40549 -15.10954 -14.93768 -14.43130 -14.23638 -13.96656 -13.79836 -13.60324 -13.43367 -13.13448 -13.03976 -12.97290 -12.86366 -12.62332 -12.37554 -12.20503 -12.09252 -12.07435 -11.93995 -11.90667 -11.77737 -11.16759 -11.13114 -10.72082 -10.22223 -9.72986 -9.64091 -8.79634 -8.67037 -6.47696 0.23518 0.36265 1.55859 1.61421 1.65036 1.84900 1.86639 2.32999 2.34778 2.56129 2.64619 2.91267 3.28775 3.52814 3.75181 3.87456 3.91439 4.01650 4.04005 4.07364 4.22038 4.34910 4.35465 4.36837 4.39625 4.40751 4.41431 4.45042 4.50365 4.63210 4.65008 4.67429 4.70930 4.74033 4.82545 4.86035 4.98946 5.08981 5.12911 5.24805 5.59133 5.66768 5.74930 6.08062 6.09465 6.46608 6.58407 6.74095 6.93386 7.06504 7.27961 8.66015 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.002311 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.653721 B =12115.309793 C =12462.236016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.077 3.923 4 C -0.167 4.167 5 C -0.116 4.116 6 C -0.082 4.082 7 C -0.050 4.050 8 C -0.117 4.117 9 C 0.523 3.477 10 O -0.593 6.593 11 N -0.636 5.636 12 C 0.120 3.880 13 C 0.197 3.803 14 O -0.576 6.576 15 C -0.632 4.632 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.915 5.915 19 Si 1.109 2.891 20 H -0.284 1.284 21 H -0.270 1.270 22 H -0.278 1.278 23 C 0.087 3.913 24 C -0.169 4.169 25 C 0.081 3.919 26 O -0.329 6.329 27 C 0.018 3.982 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.374 0.626 40 H 0.265 0.735 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -16.267 -11.177 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.032 3.968 4 C -0.185 4.185 5 C -0.134 4.134 6 C -0.083 4.083 7 C -0.088 4.088 8 C -0.156 4.156 9 C 0.315 3.685 10 O -0.475 6.475 11 N -0.369 5.369 12 C -0.003 4.003 13 C 0.157 3.843 14 O -0.384 6.384 15 C -0.670 4.670 16 H 0.079 0.921 17 C -0.202 4.202 18 N -0.552 5.552 19 Si 0.931 3.069 20 H -0.210 1.210 21 H -0.195 1.195 22 H -0.204 1.204 23 C -0.036 4.036 24 C -0.187 4.187 25 C 0.036 3.964 26 O -0.244 6.244 27 C -0.076 4.076 28 H 0.085 0.915 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.160 0.840 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.223 0.777 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.165 0.835 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.200 -16.023 -10.889 19.823 hybrid contribution -0.005 -0.055 -1.117 1.119 sum -4.205 -16.078 -12.007 20.502 Atomic orbital electron populations 1.23346 0.76575 1.05499 1.02262 1.86127 1.23226 1.26101 1.89199 1.18537 0.89456 0.85901 1.02901 1.21304 1.01124 0.90659 1.05416 1.21040 0.93785 0.98007 1.00538 1.19575 0.93824 0.94014 1.00863 1.20158 1.01202 0.92862 0.94535 1.21562 1.02187 0.92065 0.99814 1.21057 0.78490 0.87604 0.81340 1.90621 1.57616 1.67684 1.31582 1.50231 1.58568 1.22047 1.06092 1.23257 0.97915 0.85740 0.93365 1.20356 0.82332 0.88502 0.93160 1.86236 1.29809 1.75489 1.46848 1.22453 1.03028 1.49184 0.92334 0.92117 1.27056 0.95555 0.94456 1.03180 1.71016 1.21444 1.27448 1.35321 0.83016 0.75351 0.75898 0.72621 1.20958 1.19512 1.20415 1.24215 1.01314 1.00878 0.77232 1.21105 1.01089 0.90191 1.06346 1.18476 0.88805 0.86410 1.02703 1.86121 1.20455 1.28593 1.89202 1.23323 0.76931 1.05336 1.02056 0.91538 0.86532 0.91770 0.82324 0.84032 0.90624 0.90649 0.87701 0.88115 0.92113 0.88220 0.77690 0.92324 0.89064 0.90796 0.83521 0.91829 0.92100 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.56 10.28 -79.73 -0.82 -8.38 16 3 C 0.08 1.83 6.70 22.57 0.15 1.98 16 4 C -0.17 -3.27 9.04 22.35 0.20 -3.07 16 5 C -0.12 -2.39 9.69 22.28 0.22 -2.18 16 6 C -0.08 -1.87 5.13 -19.86 -0.10 -1.97 16 7 C -0.05 -1.24 4.63 29.85 0.14 -1.10 16 8 C -0.12 -3.23 5.43 29.85 0.16 -3.07 16 9 C 0.52 19.62 8.06 87.66 0.71 20.33 16 10 O -0.59 -25.73 16.71 -3.03 -0.05 -25.78 16 11 N -0.64 -25.38 3.61 -840.07 -3.03 -28.41 16 12 C 0.12 5.12 8.22 86.48 0.71 5.83 16 13 C 0.20 9.10 1.08 -10.87 -0.01 9.09 16 14 O -0.58 -28.08 13.45 -148.98 -2.00 -30.08 16 15 C -0.63 -31.36 8.56 25.60 0.22 -31.14 16 16 H 0.06 2.99 7.85 -2.91 -0.02 2.97 16 17 C 0.00 -0.03 5.26 84.65 0.45 0.42 16 18 N -0.92 -46.97 12.80 21.45 0.27 -46.70 16 19 Si 1.11 44.53 29.93 68.60 2.05 46.58 16 20 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 23 C 0.09 3.47 7.05 86.49 0.61 4.08 16 24 C -0.17 -3.77 8.69 22.35 0.19 -3.57 16 25 C 0.08 2.00 6.70 22.57 0.15 2.15 16 26 O -0.33 -7.92 10.28 -79.58 -0.82 -8.74 16 27 C 0.02 0.27 9.81 113.37 1.11 1.39 16 28 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 29 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.16 2.18 6.30 -2.91 -0.02 2.17 16 32 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.08 1.97 8.04 -2.39 -0.02 1.95 16 34 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 35 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.10 3.96 8.09 -2.39 -0.02 3.94 16 39 H 0.37 17.85 6.95 -74.06 -0.52 17.34 16 40 H 0.27 13.25 5.53 -92.70 -0.51 12.73 16 41 H 0.09 3.57 8.09 -2.39 -0.02 3.55 16 42 H 0.07 2.82 7.80 -2.38 -0.02 2.81 16 43 H 0.15 2.77 6.30 -2.91 -0.02 2.75 16 44 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 45 H 0.06 0.86 7.68 -2.39 -0.02 0.84 16 46 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -66.05 384.67 2.37 -63.69 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.74 Total: 37.32 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 6.02 Total: 0.50 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -2.76 Total: -75.11 kcal Atomic # 8 Polarization: -69.29 SS G_CDS: -3.69 Total: -72.98 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.05 Total: 46.58 kcal Total: -66.05 2.37 -63.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186844735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.734 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds