Wall clock time and date at job start Tue Mar 31 2020 19:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99761 * 2 1 4 4 C 1.53006 * 109.46712 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46946 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47219 * 180.02562 * 5 4 3 7 7 C 1.35709 * 116.99886 * 179.97438 * 6 5 4 8 8 C 1.38999 * 119.90828 * 180.02562 * 7 6 5 9 9 C 1.37708 * 120.08571 * 180.02562 * 8 7 6 10 10 C 1.39727 * 119.91116 * 359.97438 * 9 8 7 11 11 C 1.47603 * 120.08955 * 180.02562 * 10 9 8 12 12 O 1.21591 * 119.99779 * 351.51096 * 11 10 9 13 13 N 1.34771 * 120.00343 * 171.50278 * 11 10 9 14 14 C 1.47578 * 134.49386 * 181.90561 * 13 11 10 15 15 C 1.53949 * 86.12045 * 155.36299 * 14 13 11 16 16 O 1.42899 * 113.74028 * 269.15610 * 15 14 13 17 17 C 1.50696 * 113.74159 * 137.95050 * 15 14 13 18 18 H 1.07996 * 120.00344 * 17.19142 * 17 15 14 19 19 C 1.37874 * 119.99645 * 197.18305 * 17 15 14 20 20 N 1.31525 * 120.00118 * 191.80622 * 19 17 15 21 21 Si 1.86801 * 120.00363 * 11.81507 * 19 17 15 22 22 H 1.48499 * 109.47488 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.46662 * 299.99457 * 21 19 17 24 24 H 1.48502 * 109.47277 * 59.99171 * 21 19 17 25 25 C 1.47812 * 134.45441 * 1.78161 * 13 11 10 26 26 C 1.39739 * 119.82536 * 0.27434 * 10 9 8 27 27 C 1.37704 * 119.90795 * 359.44677 * 26 10 9 28 28 H 1.08996 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46869 * 299.99315 * 1 2 3 30 30 H 1.09003 * 109.47594 * 59.98914 * 1 2 3 31 31 H 1.09001 * 109.46642 * 60.01161 * 3 2 1 32 32 H 1.08996 * 109.47711 * 300.00603 * 3 2 1 33 33 H 1.08994 * 109.47311 * 60.00507 * 4 3 2 34 34 H 1.08993 * 109.47097 * 300.00059 * 4 3 2 35 35 H 1.09008 * 109.46888 * 59.99848 * 5 4 3 36 36 H 1.09001 * 109.46823 * 300.00365 * 5 4 3 37 37 H 1.08002 * 119.95760 * 359.97438 * 8 7 6 38 38 H 1.07998 * 120.04102 * 179.97438 * 9 8 7 39 39 H 1.09004 * 113.77100 * 41.06425 * 14 13 11 40 40 H 1.09007 * 113.77436 * 269.66508 * 14 13 11 41 41 H 0.96704 * 113.99367 * 176.80007 * 16 15 14 42 42 H 0.97001 * 119.99540 * 354.87808 * 20 19 17 43 43 H 1.08997 * 113.77287 * 90.37959 * 25 13 11 44 44 H 1.09002 * 113.83737 * 318.90780 * 25 13 11 45 45 H 1.08000 * 120.03860 * 179.72626 * 26 10 9 46 46 H 1.07995 * 119.95436 * 180.24789 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 8 5.5823 2.4696 -0.0012 7 6 6.2919 3.6264 -0.0014 8 6 7.6813 3.5871 -0.0031 9 6 8.4050 4.7587 -0.0027 10 6 7.7408 5.9880 -0.0012 11 6 8.5126 7.2462 -0.0013 12 8 9.7184 7.2197 0.1527 13 7 7.8808 8.4243 -0.1723 14 6 8.3204 9.8303 -0.2612 15 6 7.0245 10.0759 -1.0552 16 8 7.1765 9.9184 -2.4674 17 6 6.3151 11.3511 -0.6792 18 1 6.8412 12.1217 -0.1354 19 6 4.9942 11.5341 -1.0296 20 7 4.4415 12.7219 -0.9133 21 14 3.9895 10.0951 -1.6694 22 1 2.6091 10.5510 -1.9724 23 1 4.6181 9.5633 -2.9052 24 1 3.9426 9.0270 -0.6388 25 6 6.4693 8.8260 -0.3483 26 6 6.3438 6.0231 0.0058 27 6 5.6274 4.8472 -0.0004 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.8567 0.6440 -0.8908 34 1 3.8574 0.6436 0.8890 35 1 3.8364 3.1228 0.8905 36 1 3.8357 3.1239 -0.8895 37 1 8.1940 2.6366 -0.0038 38 1 9.4845 4.7274 -0.0036 39 1 9.2283 9.9705 -0.8479 40 1 8.3504 10.3430 0.7003 41 1 6.3543 10.0238 -2.9655 42 1 4.9394 13.4513 -0.5120 43 1 5.9543 9.0431 0.5874 44 1 5.9019 8.1659 -1.0045 45 1 5.8269 6.9714 0.0115 46 1 4.5478 4.8735 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193989054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:18 Heat of formation + Delta-G solvation = -115.699174 kcal Electronic energy + Delta-G solvation = -28378.046648 eV Core-core repulsion = 24234.283070 eV Total energy + Delta-G solvation = -4143.763578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81969 -41.00277 -39.47585 -38.91260 -38.05242 -36.07902 -34.64793 -34.11835 -32.35082 -31.62602 -30.09120 -28.21447 -27.53672 -26.90580 -26.10164 -24.20754 -23.72184 -22.29603 -21.72273 -20.63553 -19.94064 -19.28649 -18.46595 -17.92396 -17.59059 -17.42124 -17.08788 -16.71777 -16.53037 -16.34167 -15.91990 -15.83874 -15.58432 -15.21091 -14.82002 -14.76302 -14.61576 -14.42108 -14.27354 -14.14242 -13.88173 -13.52264 -13.36884 -12.97943 -12.77408 -12.74508 -12.50748 -12.42376 -12.17624 -12.10860 -11.79664 -11.75832 -11.66605 -11.31228 -11.10706 -10.88070 -10.63407 -10.32792 -10.15713 -9.81257 -9.30746 -8.82559 -6.59858 -0.18186 0.25490 1.41987 1.47720 1.62096 1.75092 1.81319 1.90076 2.43670 2.75830 2.90969 2.97133 3.21720 3.52971 3.61443 3.72579 3.81190 3.86788 3.99561 4.11394 4.15421 4.23213 4.29310 4.34664 4.36054 4.40002 4.46462 4.50303 4.53092 4.55786 4.56368 4.59121 4.70821 4.88070 4.92791 4.95956 5.01519 5.02782 5.12571 5.17699 5.35801 5.56329 5.58605 5.91332 6.19377 6.29891 6.40056 6.64833 6.93108 7.02271 7.26935 8.52720 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.002891 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.940161 B = 9684.074390 C =11990.488856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.062 3.938 4 C -0.114 4.114 5 C 0.053 3.947 6 O -0.316 6.316 7 C 0.158 3.842 8 C -0.159 4.159 9 C -0.027 4.027 10 C -0.187 4.187 11 C 0.571 3.429 12 O -0.594 6.594 13 N -0.629 5.629 14 C 0.124 3.876 15 C 0.191 3.809 16 O -0.573 6.573 17 C -0.619 4.619 18 H 0.033 0.967 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 1.066 2.934 22 H -0.286 1.286 23 H -0.247 1.247 24 H -0.228 1.228 25 C 0.064 3.936 26 C -0.062 4.062 27 C -0.211 4.211 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.158 0.842 38 H 0.138 0.862 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.375 0.625 42 H 0.257 0.743 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.146 0.854 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 -24.773 1.838 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.014 4.014 4 C -0.151 4.151 5 C -0.022 4.022 6 O -0.229 6.229 7 C 0.112 3.888 8 C -0.178 4.178 9 C -0.046 4.046 10 C -0.190 4.190 11 C 0.364 3.636 12 O -0.478 6.478 13 N -0.362 5.362 14 C 0.001 3.999 15 C 0.150 3.850 16 O -0.383 6.383 17 C -0.657 4.657 18 H 0.051 0.949 19 C -0.210 4.210 20 N -0.554 5.554 21 Si 0.884 3.116 22 H -0.212 1.212 23 H -0.172 1.172 24 H -0.151 1.151 25 C -0.058 4.058 26 C -0.081 4.081 27 C -0.230 4.230 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.226 0.774 42 H 0.067 0.933 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.163 0.837 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.285 -25.824 1.524 27.485 hybrid contribution 1.055 1.952 0.676 2.320 sum -8.229 -23.872 2.200 25.346 Atomic orbital electron populations 1.22930 0.79230 1.03843 1.01036 1.87815 1.21616 1.28664 1.95684 1.22401 0.92282 0.84765 1.01949 1.21299 0.93690 0.95616 1.04525 1.22918 0.76887 0.98748 1.03638 1.85993 1.20922 1.28362 1.87634 1.19303 0.91630 0.85134 0.92752 1.20541 0.90913 0.99301 1.07023 1.21089 1.00731 0.89938 0.92828 1.19746 0.94398 0.92465 1.12426 1.18403 0.86527 0.83247 0.75407 1.90686 1.15823 1.87502 1.53775 1.49980 1.10696 1.05364 1.70141 1.23232 0.98327 0.78858 0.99459 1.20391 0.93020 0.91864 0.79696 1.86375 1.38425 1.94421 1.19081 1.22273 0.98524 1.03093 1.41817 0.94915 1.27375 0.96997 1.02438 0.94210 1.70953 1.42434 1.01614 1.40431 0.83956 0.75457 0.73160 0.78983 1.21223 1.17210 1.15089 1.24763 0.83361 0.95796 1.01880 1.21893 0.92467 1.00212 0.93494 1.21462 1.01958 0.90728 1.08804 0.88708 0.93023 0.93036 0.91619 0.91629 0.90510 0.90501 0.89875 0.89895 0.82467 0.84378 0.91562 0.88441 0.77434 0.93336 0.87280 0.88463 0.83706 0.81802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.07 10.70 -148.98 -1.59 -7.67 16 3 C 0.06 0.64 5.94 71.98 0.43 1.07 16 4 C -0.11 -1.32 5.95 30.60 0.18 -1.14 16 5 C 0.05 0.62 4.73 71.98 0.34 0.96 16 6 O -0.32 -5.71 10.12 -90.30 -0.91 -6.63 16 7 C 0.16 3.31 6.70 22.63 0.15 3.46 16 8 C -0.16 -3.53 9.97 22.33 0.22 -3.31 16 9 C -0.03 -0.74 9.58 22.50 0.22 -0.52 16 10 C -0.19 -5.97 5.87 -20.08 -0.12 -6.09 16 11 C 0.57 22.76 7.97 86.72 0.69 23.45 16 12 O -0.59 -27.20 17.10 -4.00 -0.07 -27.27 16 13 N -0.63 -25.02 3.61 -843.21 -3.04 -28.07 16 14 C 0.12 5.25 8.23 86.49 0.71 5.96 16 15 C 0.19 8.38 1.07 -10.88 -0.01 8.37 16 16 O -0.57 -25.36 13.46 -148.98 -2.01 -27.36 16 17 C -0.62 -31.61 9.04 25.60 0.23 -31.38 16 18 H 0.03 1.87 8.05 -2.91 -0.02 1.84 16 19 C -0.01 -0.48 5.44 84.65 0.46 -0.02 16 20 N -0.92 -52.00 13.70 21.45 0.29 -51.71 16 21 Si 1.07 39.74 24.65 68.60 1.69 41.44 16 22 H -0.29 -11.18 7.11 99.48 0.71 -10.48 16 23 H -0.25 -7.98 5.75 99.48 0.57 -7.40 16 24 H -0.23 -6.81 6.39 99.48 0.64 -6.18 16 25 C 0.06 2.33 3.25 86.44 0.28 2.61 16 26 C -0.06 -1.66 9.07 22.51 0.20 -1.45 16 27 C -0.21 -4.33 9.01 22.32 0.20 -4.13 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.76 7.65 -2.38 -0.02 0.74 16 36 H 0.08 0.77 7.65 -2.39 -0.02 0.75 16 37 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.14 3.80 7.67 -2.91 -0.02 3.78 16 39 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.10 3.97 8.09 -2.38 -0.02 3.95 16 41 H 0.37 14.88 5.86 -74.05 -0.43 14.45 16 42 H 0.26 14.93 8.72 -92.71 -0.81 14.13 16 43 H 0.11 3.76 8.08 -2.39 -0.02 3.74 16 44 H 0.10 3.08 5.08 -2.39 -0.01 3.07 16 45 H 0.15 3.79 3.89 -2.91 -0.01 3.78 16 46 H 0.16 2.26 6.28 -2.91 -0.02 2.24 16 Total: -1.00 -69.89 375.65 0.13 -69.77 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.33 Total: 38.19 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.44 Total: -0.69 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -2.75 Total: -79.78 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -4.58 Total: -68.93 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.69 Total: 41.44 kcal Total: -69.89 0.13 -69.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193989054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.934 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds