Wall clock time and date at job start Tue Mar 31 2020 19:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00199 * 2 1 4 4 C 1.52999 * 109.47320 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47221 * 64.99397 * 4 3 2 6 6 C 1.35896 * 116.99775 * 180.02562 * 5 4 3 7 7 C 1.38730 * 120.05478 * 180.02562 * 6 5 4 8 8 C 1.38141 * 119.94764 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.05370 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.94269 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47171 * 90.00243 * 10 9 8 12 12 O 1.21281 * 119.99958 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00331 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49442 * 179.97438 * 13 11 10 15 15 C 1.53953 * 86.11613 * 155.35662 * 14 13 11 16 16 O 1.42891 * 113.74249 * 269.15295 * 15 14 13 17 17 C 1.50704 * 113.73748 * 137.95211 * 15 14 13 18 18 H 1.07998 * 120.00120 * 3.90458 * 17 15 14 19 19 C 1.37883 * 119.99782 * 183.91187 * 17 15 14 20 20 N 1.31513 * 120.00053 * 185.23007 * 19 17 15 21 21 Si 1.86796 * 119.99938 * 5.22387 * 19 17 15 22 22 H 1.48495 * 109.47550 * 270.00395 * 21 19 17 23 23 H 1.48511 * 109.47116 * 30.00543 * 21 19 17 24 24 H 1.48499 * 109.47060 * 149.99973 * 21 19 17 25 25 C 1.47582 * 134.49131 * 359.97438 * 13 11 10 26 26 C 1.38263 * 120.11044 * 0.25347 * 9 8 7 27 27 C 1.38140 * 120.05525 * 359.44706 * 26 9 8 28 28 H 1.09002 * 109.47203 * 300.00287 * 1 2 3 29 29 H 1.08998 * 109.47216 * 59.99840 * 1 2 3 30 30 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47687 * 59.99587 * 3 2 1 32 32 H 1.09005 * 109.46862 * 299.99772 * 3 2 1 33 33 H 1.09007 * 109.46549 * 304.99882 * 4 3 2 34 34 H 1.08994 * 109.47513 * 184.99758 * 4 3 2 35 35 H 1.08004 * 120.02744 * 0.02562 * 7 6 5 36 36 H 1.08000 * 119.97629 * 179.97438 * 8 7 6 37 37 H 1.08998 * 109.47696 * 330.00063 * 10 9 8 38 38 H 1.09008 * 109.46941 * 209.99930 * 10 9 8 39 39 H 1.08998 * 113.77112 * 41.06103 * 14 13 11 40 40 H 1.09000 * 113.87384 * 269.66796 * 14 13 11 41 41 H 0.96707 * 113.99791 * 172.50486 * 16 15 14 42 42 H 0.97008 * 119.99681 * 354.94910 * 20 19 17 43 43 H 1.09003 * 113.77322 * 90.33860 * 25 13 11 44 44 H 1.09009 * 113.76717 * 318.93870 * 25 13 11 45 45 H 1.08002 * 119.96904 * 179.71263 * 26 9 8 46 46 H 1.08003 * 120.03158 * 180.25626 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3019 0.3976 -1.3836 7 6 5.7886 -0.1837 -2.5454 8 6 7.1481 -0.3679 -2.7072 9 6 8.0235 0.0260 -1.7121 10 6 9.5060 -0.1768 -1.8909 11 6 10.1036 1.0398 -2.5497 12 8 9.3952 1.9788 -2.8453 13 7 11.4251 1.0843 -2.8103 14 6 12.3252 2.0796 -3.4246 15 6 13.4489 1.4096 -2.6132 16 8 13.6532 1.9913 -1.3242 17 6 14.7301 1.2287 -3.3859 18 1 14.8139 1.6154 -4.3907 19 6 15.7952 0.5692 -2.8099 20 7 16.9461 0.5007 -3.4425 21 14 15.6035 -0.2268 -1.1309 22 1 15.9598 0.7540 -0.0745 23 1 14.1957 -0.6625 -0.9475 24 1 16.5025 -1.4050 -1.0361 25 6 12.5534 0.1575 -2.5961 26 6 7.5406 0.6003 -0.5508 27 6 6.1824 0.7923 -0.3868 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0889 35 1 5.1052 -0.4919 -3.3228 36 1 7.5274 -0.8208 -3.6113 37 1 9.6803 -1.0516 -2.5173 38 1 9.9721 -0.3285 -0.9172 39 1 12.1170 3.1059 -3.1223 40 1 12.4357 1.9681 -4.5033 41 1 14.2763 1.5047 -0.7673 42 1 17.0254 0.8495 -4.3443 43 1 12.7299 -0.5204 -3.4313 44 1 12.5274 -0.3509 -1.6321 45 1 8.2261 0.9028 0.2270 46 1 5.8059 1.2448 0.5187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193990358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:36 Heat of formation + Delta-G solvation = -94.832164 kcal Electronic energy + Delta-G solvation = -27927.586575 eV Core-core repulsion = 23784.727859 eV Total energy + Delta-G solvation = -4142.858716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.37534 -39.73278 -38.54075 -37.85531 -36.98028 -34.39077 -32.63547 -32.40438 -31.20464 -30.63891 -29.01426 -26.98615 -26.63358 -25.52469 -24.64010 -23.92527 -22.24213 -21.35148 -20.02027 -18.60628 -18.44159 -18.00270 -17.24239 -16.59342 -16.51612 -16.11441 -16.00538 -15.58814 -15.44886 -15.34281 -14.96005 -14.73200 -14.30089 -14.02184 -13.55314 -13.44862 -13.42325 -13.01962 -12.90998 -12.70028 -12.44767 -12.27178 -12.09114 -12.03201 -11.70457 -11.66780 -11.49225 -11.37855 -11.03459 -10.83822 -10.80562 -10.40961 -10.16801 -9.95751 -9.52662 -9.41159 -9.02601 -8.99293 -8.57448 -8.10593 -8.01121 -6.73048 -4.49403 1.34914 1.39928 2.95647 3.06894 3.08170 3.11439 3.26981 3.29199 3.37088 3.82310 4.15110 4.43544 4.64044 4.70392 4.74426 4.76940 4.80261 4.83522 4.90187 4.93703 4.98218 4.99667 5.15258 5.19152 5.24643 5.27574 5.34814 5.51272 5.57201 5.64014 5.70429 6.00796 6.01332 6.04973 6.19502 6.25747 6.30963 6.31935 6.45885 6.59626 6.63623 6.64001 6.73922 7.31456 7.47880 8.04804 8.30129 8.45063 8.57424 8.64197 9.26250 10.62623 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.001900 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.830430 B =14735.192427 C =14907.146306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.309 6.309 6 C 0.124 3.876 7 C -0.149 4.149 8 C -0.066 4.066 9 C -0.094 4.094 10 C -0.094 4.094 11 C 0.530 3.470 12 O -0.552 6.552 13 N -0.636 5.636 14 C 0.127 3.873 15 C 0.197 3.803 16 O -0.555 6.555 17 C -0.610 4.610 18 H 0.071 0.929 19 C 0.034 3.966 20 N -0.891 5.891 21 Si 1.032 2.968 22 H -0.276 1.276 23 H -0.267 1.267 24 H -0.280 1.280 25 C 0.059 3.941 26 C -0.065 4.065 27 C -0.207 4.207 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.354 0.646 42 H 0.274 0.726 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.123 0.877 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.881 -3.379 7.980 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.223 6.223 6 C 0.080 3.920 7 C -0.168 4.168 8 C -0.084 4.084 9 C -0.095 4.095 10 C -0.134 4.134 11 C 0.319 3.681 12 O -0.431 6.431 13 N -0.371 5.371 14 C 0.005 3.995 15 C 0.156 3.844 16 O -0.364 6.364 17 C -0.648 4.648 18 H 0.090 0.910 19 C -0.173 4.173 20 N -0.524 5.524 21 Si 0.861 3.139 22 H -0.203 1.203 23 H -0.193 1.193 24 H -0.206 1.206 25 C -0.064 4.064 26 C -0.083 4.083 27 C -0.226 4.226 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.204 0.796 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.141 0.859 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.104 -3.486 8.674 27.727 hybrid contribution -0.444 0.745 -0.864 1.224 sum -26.548 -2.741 7.810 27.808 Atomic orbital electron populations 1.22765 0.80822 1.03020 0.99976 1.87973 1.19823 1.27138 1.95412 1.22584 0.91640 0.85747 1.01427 1.22815 0.93552 0.98364 0.86752 1.86097 1.20307 1.77046 1.38856 1.18948 0.82062 0.96299 0.94740 1.20322 0.95430 1.04212 0.96834 1.20790 0.91908 0.97770 0.97899 1.19240 0.93902 1.01361 0.94949 1.20550 0.92373 0.97600 1.02876 1.20110 0.80180 0.88536 0.79233 1.90668 1.59356 1.38475 1.54566 1.50180 1.05254 1.21948 1.59696 1.23229 0.84787 0.93866 0.97634 1.20514 0.93414 0.88229 0.82287 1.86460 1.66667 1.55408 1.27871 1.22280 0.98220 1.41201 1.03138 0.91050 1.25821 0.91988 0.94617 1.04905 1.70767 1.23881 1.43796 1.13951 0.84288 0.76722 0.77783 0.75135 1.20273 1.19311 1.20593 1.24734 0.83633 0.96852 1.01142 1.20774 0.94524 0.95949 0.97030 1.21121 0.94066 1.07500 0.99912 0.94070 0.93896 0.89447 0.91100 0.92021 0.91082 0.90369 0.85336 0.85511 0.88316 0.88358 0.90886 0.89262 0.79571 0.91586 0.88956 0.90912 0.85892 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.62 10.67 -40.09 -0.43 -4.05 16 3 C 0.06 0.46 6.32 37.16 0.23 0.69 16 4 C 0.06 0.52 5.12 37.16 0.19 0.71 16 5 O -0.31 -3.79 10.10 -24.27 -0.25 -4.03 16 6 C 0.12 1.63 6.69 -39.22 -0.26 1.37 16 7 C -0.15 -1.95 9.99 -39.44 -0.39 -2.35 16 8 C -0.07 -0.88 9.69 -39.61 -0.38 -1.26 16 9 C -0.09 -1.34 4.37 -104.60 -0.46 -1.80 16 10 C -0.09 -1.35 5.58 -29.04 -0.16 -1.51 16 11 C 0.53 10.04 8.05 -10.99 -0.09 9.95 16 12 O -0.55 -12.24 16.76 5.56 0.09 -12.14 16 13 N -0.64 -12.56 3.61 -178.30 -0.64 -13.21 16 14 C 0.13 2.68 8.23 -2.97 -0.02 2.65 16 15 C 0.20 4.42 1.06 -90.84 -0.10 4.32 16 16 O -0.55 -12.71 13.42 -35.23 -0.47 -13.18 16 17 C -0.61 -15.61 9.04 -34.44 -0.31 -15.92 16 18 H 0.07 1.95 8.04 -52.49 -0.42 1.53 16 19 C 0.03 0.89 5.47 -17.82 -0.10 0.79 16 20 N -0.89 -25.09 13.70 55.43 0.76 -24.33 16 21 Si 1.03 21.59 24.79 -169.99 -4.21 17.37 16 22 H -0.28 -5.50 6.95 56.52 0.39 -5.11 16 23 H -0.27 -4.87 4.86 56.52 0.27 -4.60 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 C 0.06 1.14 6.78 -2.97 -0.02 1.12 16 26 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 27 C -0.21 -2.57 9.04 -39.43 -0.36 -2.92 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.58 7.66 -51.93 -0.40 0.18 16 34 H 0.08 0.55 7.67 -51.93 -0.40 0.15 16 35 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 36 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 38 H 0.10 1.26 8.08 -51.92 -0.42 0.84 16 39 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 41 H 0.35 7.46 4.23 45.56 0.19 7.65 16 42 H 0.27 7.69 8.72 -40.82 -0.36 7.33 16 43 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 44 H 0.07 1.29 6.54 -51.92 -0.34 0.95 16 45 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 46 H 0.12 1.22 6.30 -52.48 -0.33 0.89 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -33.07 382.61 -7.35 -40.42 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.47 Total: 11.51 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.50 Total: -4.12 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.12 Total: -37.54 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.05 Total: -33.41 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.21 Total: 17.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.07 -7.35 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193990358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.411 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds