Wall clock time and date at job start Tue Mar 31 2020 19:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00199 * 2 1 4 4 C 1.52999 * 109.47320 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47221 * 64.99397 * 4 3 2 6 6 C 1.35896 * 116.99775 * 180.02562 * 5 4 3 7 7 C 1.38730 * 120.05478 * 180.02562 * 6 5 4 8 8 C 1.38141 * 119.94764 * 180.02562 * 7 6 5 9 9 C 1.38269 * 120.05370 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.94269 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47171 * 90.00243 * 10 9 8 12 12 O 1.21281 * 119.99958 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00331 * 179.97438 * 11 10 9 14 14 C 1.47579 * 134.49442 * 179.97438 * 13 11 10 15 15 C 1.53953 * 86.11613 * 155.35662 * 14 13 11 16 16 O 1.42891 * 113.74249 * 269.15295 * 15 14 13 17 17 C 1.50704 * 113.73748 * 137.95211 * 15 14 13 18 18 H 1.07998 * 120.00120 * 3.90458 * 17 15 14 19 19 C 1.37883 * 119.99782 * 183.91187 * 17 15 14 20 20 N 1.31513 * 120.00053 * 185.23007 * 19 17 15 21 21 Si 1.86796 * 119.99938 * 5.22387 * 19 17 15 22 22 H 1.48495 * 109.47550 * 270.00395 * 21 19 17 23 23 H 1.48511 * 109.47116 * 30.00543 * 21 19 17 24 24 H 1.48499 * 109.47060 * 149.99973 * 21 19 17 25 25 C 1.47582 * 134.49131 * 359.97438 * 13 11 10 26 26 C 1.38263 * 120.11044 * 0.25347 * 9 8 7 27 27 C 1.38140 * 120.05525 * 359.44706 * 26 9 8 28 28 H 1.09002 * 109.47203 * 300.00287 * 1 2 3 29 29 H 1.08998 * 109.47216 * 59.99840 * 1 2 3 30 30 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47687 * 59.99587 * 3 2 1 32 32 H 1.09005 * 109.46862 * 299.99772 * 3 2 1 33 33 H 1.09007 * 109.46549 * 304.99882 * 4 3 2 34 34 H 1.08994 * 109.47513 * 184.99758 * 4 3 2 35 35 H 1.08004 * 120.02744 * 0.02562 * 7 6 5 36 36 H 1.08000 * 119.97629 * 179.97438 * 8 7 6 37 37 H 1.08998 * 109.47696 * 330.00063 * 10 9 8 38 38 H 1.09008 * 109.46941 * 209.99930 * 10 9 8 39 39 H 1.08998 * 113.77112 * 41.06103 * 14 13 11 40 40 H 1.09000 * 113.87384 * 269.66796 * 14 13 11 41 41 H 0.96707 * 113.99791 * 172.50486 * 16 15 14 42 42 H 0.97008 * 119.99681 * 354.94910 * 20 19 17 43 43 H 1.09003 * 113.77322 * 90.33860 * 25 13 11 44 44 H 1.09009 * 113.76717 * 318.93870 * 25 13 11 45 45 H 1.08002 * 119.96904 * 179.71263 * 26 9 8 46 46 H 1.08003 * 120.03158 * 180.25626 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3019 0.3976 -1.3836 7 6 5.7886 -0.1837 -2.5454 8 6 7.1481 -0.3679 -2.7072 9 6 8.0235 0.0260 -1.7121 10 6 9.5060 -0.1768 -1.8909 11 6 10.1036 1.0398 -2.5497 12 8 9.3952 1.9788 -2.8453 13 7 11.4251 1.0843 -2.8103 14 6 12.3252 2.0796 -3.4246 15 6 13.4489 1.4096 -2.6132 16 8 13.6532 1.9913 -1.3242 17 6 14.7301 1.2287 -3.3859 18 1 14.8139 1.6154 -4.3907 19 6 15.7952 0.5692 -2.8099 20 7 16.9461 0.5007 -3.4425 21 14 15.6035 -0.2268 -1.1309 22 1 15.9598 0.7540 -0.0745 23 1 14.1957 -0.6625 -0.9475 24 1 16.5025 -1.4050 -1.0361 25 6 12.5534 0.1575 -2.5961 26 6 7.5406 0.6003 -0.5508 27 6 6.1824 0.7923 -0.3868 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0889 35 1 5.1052 -0.4919 -3.3228 36 1 7.5274 -0.8208 -3.6113 37 1 9.6803 -1.0516 -2.5173 38 1 9.9721 -0.3285 -0.9172 39 1 12.1170 3.1059 -3.1223 40 1 12.4357 1.9681 -4.5033 41 1 14.2763 1.5047 -0.7673 42 1 17.0254 0.8495 -4.3443 43 1 12.7299 -0.5204 -3.4313 44 1 12.5274 -0.3509 -1.6321 45 1 8.2261 0.9028 0.2270 46 1 5.8059 1.2448 0.5187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193990358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:35 Heat of formation + Delta-G solvation = -119.212141 kcal Electronic energy + Delta-G solvation = -27928.643770 eV Core-core repulsion = 23784.727859 eV Total energy + Delta-G solvation = -4143.915912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52075 -41.04705 -39.59423 -38.86580 -38.02838 -36.12043 -34.62788 -33.42923 -32.11630 -31.42765 -30.51302 -28.20782 -27.28455 -27.05255 -26.30685 -24.68136 -23.15466 -22.37671 -21.62853 -20.14857 -19.86702 -19.31658 -18.08444 -17.83839 -17.72322 -17.36914 -16.96116 -16.76606 -16.53049 -16.17282 -16.02039 -15.86658 -15.62782 -15.18822 -15.07085 -14.76795 -14.35531 -14.29280 -14.16975 -13.95343 -13.85849 -13.54899 -13.16800 -13.04312 -12.87371 -12.62134 -12.52501 -12.50315 -12.27624 -12.06618 -11.82019 -11.70999 -11.64754 -11.26841 -11.05722 -10.88745 -10.69152 -10.37481 -9.94956 -9.65136 -9.06661 -8.79503 -6.58389 0.38620 0.40963 1.41548 1.49927 1.64504 1.65814 1.91716 2.19757 2.43898 2.76262 2.79109 2.87525 3.30555 3.68839 3.75584 3.79744 3.86963 3.93331 3.96782 4.08244 4.24640 4.32630 4.34976 4.37445 4.40620 4.44287 4.50274 4.53501 4.56188 4.62160 4.65012 4.69459 4.71515 4.78860 4.85223 4.85889 4.96690 5.07851 5.28082 5.36181 5.59145 5.64418 5.79781 5.91275 6.16113 6.39031 6.44805 6.75518 6.82731 7.14948 7.28171 8.54627 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.001900 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.830430 B =14735.192427 C =14907.146306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.061 3.939 4 C 0.051 3.949 5 O -0.325 6.325 6 C 0.117 3.883 7 C -0.164 4.164 8 C -0.074 4.074 9 C -0.114 4.114 10 C -0.084 4.084 11 C 0.527 3.473 12 O -0.589 6.589 13 N -0.636 5.636 14 C 0.120 3.880 15 C 0.186 3.814 16 O -0.563 6.563 17 C -0.615 4.615 18 H 0.034 0.966 19 C -0.014 4.014 20 N -0.926 5.926 21 Si 1.065 2.935 22 H -0.259 1.259 23 H -0.219 1.219 24 H -0.285 1.285 25 C 0.075 3.925 26 C -0.076 4.076 27 C -0.210 4.210 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.363 0.637 42 H 0.257 0.743 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.135 0.865 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.967 -4.530 10.453 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.015 4.015 4 C -0.024 4.024 5 O -0.240 6.240 6 C 0.072 3.928 7 C -0.183 4.183 8 C -0.092 4.092 9 C -0.115 4.115 10 C -0.123 4.123 11 C 0.319 3.681 12 O -0.470 6.470 13 N -0.371 5.371 14 C -0.003 4.003 15 C 0.145 3.855 16 O -0.373 6.373 17 C -0.653 4.653 18 H 0.052 0.948 19 C -0.214 4.214 20 N -0.560 5.560 21 Si 0.885 3.115 22 H -0.185 1.185 23 H -0.142 1.142 24 H -0.211 1.211 25 C -0.047 4.047 26 C -0.094 4.094 27 C -0.229 4.229 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.214 0.786 42 H 0.066 0.934 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.153 0.847 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.223 -4.630 11.139 30.693 hybrid contribution 0.121 1.227 -1.708 2.106 sum -28.102 -3.403 9.431 29.837 Atomic orbital electron populations 1.22924 0.79309 1.03780 1.01039 1.87920 1.21648 1.28455 1.95668 1.22722 0.90645 0.85322 1.02821 1.23130 0.94647 0.99020 0.85564 1.86088 1.19833 1.77348 1.40689 1.19148 0.82696 0.96077 0.94920 1.20555 0.95737 1.04537 0.97438 1.21004 0.92074 0.97796 0.98295 1.19377 0.93998 1.02469 0.95614 1.20576 0.92136 0.95732 1.03852 1.20980 0.79313 0.89423 0.78379 1.90652 1.60013 1.40333 1.56043 1.50170 1.05816 1.21365 1.59712 1.23168 0.85393 0.93891 0.97851 1.20514 0.92342 0.90621 0.82033 1.86441 1.66943 1.56201 1.27729 1.22398 1.00325 1.40571 1.02032 0.94764 1.27369 0.91096 0.94534 1.08362 1.70917 1.25555 1.45956 1.13621 0.83978 0.79440 0.77151 0.70921 1.18520 1.14220 1.21120 1.24561 0.81704 0.95326 1.03107 1.21035 0.95245 0.95815 0.97281 1.21384 0.93724 1.07116 1.00627 0.92391 0.93406 0.88969 0.88213 0.91996 0.90629 0.88759 0.84475 0.84330 0.85834 0.86132 0.91974 0.89091 0.78576 0.93406 0.87975 0.87999 0.84743 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.31 10.67 -144.34 -1.54 -8.85 16 3 C 0.06 0.78 6.32 71.98 0.45 1.23 16 4 C 0.05 0.79 5.12 71.98 0.37 1.16 16 5 O -0.33 -7.60 10.10 -87.74 -0.89 -8.48 16 6 C 0.12 2.91 6.69 22.51 0.15 3.06 16 7 C -0.16 -4.13 9.99 22.36 0.22 -3.90 16 8 C -0.07 -1.86 9.69 22.25 0.22 -1.65 16 9 C -0.11 -2.99 4.37 -19.85 -0.09 -3.08 16 10 C -0.08 -2.11 5.58 29.10 0.16 -1.95 16 11 C 0.53 18.78 8.05 87.66 0.71 19.49 16 12 O -0.59 -25.54 16.76 -3.03 -0.05 -25.59 16 13 N -0.64 -23.70 3.61 -840.24 -3.03 -26.73 16 14 C 0.12 5.02 8.23 86.48 0.71 5.73 16 15 C 0.19 8.08 1.06 -10.88 -0.01 8.07 16 16 O -0.56 -24.49 13.42 -148.98 -2.00 -26.49 16 17 C -0.62 -31.79 9.04 25.60 0.23 -31.56 16 18 H 0.03 1.96 8.04 -2.91 -0.02 1.94 16 19 C -0.01 -0.71 5.47 84.66 0.46 -0.25 16 20 N -0.93 -53.44 13.70 21.45 0.29 -53.15 16 21 Si 1.07 41.09 24.79 68.60 1.70 42.79 16 22 H -0.26 -9.34 6.95 99.48 0.69 -8.64 16 23 H -0.22 -6.67 4.86 99.48 0.48 -6.18 16 24 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 25 C 0.08 2.64 6.78 86.48 0.59 3.23 16 26 C -0.08 -1.87 9.69 22.25 0.22 -1.66 16 27 C -0.21 -4.79 9.04 22.36 0.20 -4.59 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.08 1.08 7.66 -2.38 -0.02 1.06 16 34 H 0.09 1.12 7.67 -2.39 -0.02 1.10 16 35 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.12 2.50 8.08 -2.39 -0.02 2.48 16 38 H 0.12 2.53 8.08 -2.38 -0.02 2.51 16 39 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.09 3.71 8.09 -2.39 -0.02 3.69 16 41 H 0.36 14.09 4.23 -74.05 -0.31 13.78 16 42 H 0.26 15.15 8.72 -92.70 -0.81 14.34 16 43 H 0.10 3.42 8.09 -2.39 -0.02 3.40 16 44 H 0.10 3.01 6.54 -2.38 -0.02 3.00 16 45 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 46 H 0.15 2.52 6.30 -2.91 -0.02 2.50 16 Total: -1.00 -73.50 382.61 0.73 -72.77 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: 0.40 Total: 38.89 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.84 Total: -5.16 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.74 Total: -79.88 kcal Atomic # 8 Polarization: -64.93 SS G_CDS: -4.48 Total: -69.41 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.70 Total: 42.79 kcal Total: -73.50 0.73 -72.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193990358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.438 kcal (2) G-P(sol) polarization free energy of solvation -73.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds