Wall clock time and date at job start Tue Mar 31 2020 19:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00164 * 2 1 4 4 C 1.52994 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.47432 * 179.97438 * 4 3 2 6 6 N 1.46494 * 109.47460 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00212 * 179.97438 * 6 5 4 8 8 O 1.21725 * 119.99480 * 359.97438 * 7 6 5 9 9 C 1.46249 * 120.00046 * 180.02562 * 7 6 5 10 10 C 1.35024 * 119.99930 * 173.63294 * 9 7 6 11 11 C 1.46965 * 119.99934 * 346.77997 * 10 9 7 12 12 C 1.40034 * 120.07918 * 316.61483 * 11 10 9 13 13 C 1.37646 * 120.00450 * 179.76553 * 12 11 10 14 14 C 1.39063 * 120.15748 * 0.51330 * 13 12 11 15 15 O 1.35607 * 119.92127 * 179.76264 * 14 13 12 16 16 C 1.34762 * 116.99943 * 355.61565 * 15 14 13 17 17 H 1.07995 * 120.00113 * 5.01061 * 16 15 14 18 18 C 1.38709 * 120.00045 * 185.00838 * 16 15 14 19 19 N 1.31522 * 119.99967 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00005 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47188 * 90.00113 * 20 18 16 22 22 H 1.48495 * 109.47152 * 209.99934 * 20 18 16 23 23 H 1.48503 * 109.47239 * 329.99948 * 20 18 16 24 24 C 1.39623 * 120.15869 * 359.74257 * 14 13 12 25 25 O 1.35951 * 120.00069 * 180.02562 * 24 14 13 26 26 C 1.42901 * 116.99865 * 179.97438 * 25 24 14 27 27 C 1.38080 * 119.99859 * 0.02562 * 24 14 13 28 28 H 1.09000 * 109.46650 * 60.00511 * 1 2 3 29 29 H 1.08998 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46989 * 300.00998 * 1 2 3 31 31 H 1.08998 * 109.47253 * 59.99510 * 3 2 1 32 32 H 1.09002 * 109.46675 * 299.99896 * 3 2 1 33 33 H 1.09000 * 109.47742 * 59.99306 * 4 3 2 34 34 H 1.09002 * 109.47296 * 299.99608 * 4 3 2 35 35 H 1.09000 * 109.47068 * 59.99084 * 5 4 3 36 36 H 1.09004 * 109.46257 * 299.99911 * 5 4 3 37 37 H 0.97000 * 119.99992 * 0.02562 * 6 5 4 38 38 H 1.07999 * 120.00174 * 353.34619 * 9 7 6 39 39 H 1.08000 * 120.00195 * 166.78599 * 10 9 7 40 40 H 1.08001 * 119.99696 * 0.02562 * 12 11 10 41 41 H 1.07994 * 119.92550 * 180.23283 * 13 12 11 42 42 H 0.97001 * 119.99993 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.47107 * 59.99927 * 26 25 24 44 44 H 1.08996 * 109.46737 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.46751 * 299.99893 * 26 25 24 46 46 H 1.08000 * 120.08347 * 179.97438 * 27 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5824 0.0000 6 7 5.6183 2.4667 0.0012 7 6 6.3823 3.5770 0.0004 8 8 5.8587 4.6759 -0.0018 9 6 7.8402 3.4615 0.0011 10 6 8.6050 4.5665 -0.1294 11 6 7.9978 5.8339 -0.5595 12 6 7.0718 5.8476 -1.6098 13 6 6.5004 7.0349 -2.0082 14 6 6.8483 8.2241 -1.3769 15 8 6.2860 9.3916 -1.7764 16 6 5.4691 9.3424 -2.8471 17 1 5.2239 8.3913 -3.2959 18 6 4.9432 10.5134 -3.3726 19 7 4.1455 10.4653 -4.4172 20 14 5.3678 12.1587 -2.5966 21 1 6.5867 12.7101 -3.2411 22 1 4.2371 13.1023 -2.7871 23 1 5.6171 11.9716 -1.1446 24 6 7.7749 8.2189 -0.3324 25 8 8.1122 9.3833 0.2828 26 6 9.0661 9.3037 1.3440 27 6 8.3485 7.0310 0.0756 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8576 0.6434 -0.8890 34 1 3.8568 0.6439 0.8909 35 1 3.8359 3.1239 0.8894 36 1 3.8366 3.1226 -0.8905 37 1 6.0354 1.5910 0.0019 38 1 8.3051 2.4928 0.1106 39 1 9.6631 4.5190 0.0821 40 1 6.8028 4.9261 -2.1046 41 1 5.7836 7.0435 -2.8158 42 1 3.7774 11.2842 -4.7844 43 1 10.0007 8.8925 0.9623 44 1 9.2449 10.3004 1.7471 45 1 8.6797 8.6572 2.1320 46 1 9.0657 7.0254 0.8831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212961040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:11 Heat of formation + Delta-G solvation = -89.505418 kcal Electronic energy + Delta-G solvation = -28221.024137 eV Core-core repulsion = 24078.396405 eV Total energy + Delta-G solvation = -4142.627731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.94108 -39.29621 -38.27884 -37.63112 -36.47826 -35.19874 -32.98122 -32.31431 -31.93740 -29.54273 -28.77375 -27.40286 -26.54898 -25.55073 -24.96152 -23.03880 -21.89981 -21.52077 -20.99195 -19.25630 -17.98058 -17.76123 -16.88613 -16.69443 -16.61523 -16.24595 -15.56294 -15.29615 -15.23656 -15.19216 -14.99696 -14.47282 -14.15412 -13.89633 -13.71685 -13.57051 -13.45194 -13.11175 -12.76932 -12.53174 -12.21685 -12.17853 -12.15199 -12.05392 -11.52958 -11.48172 -11.41406 -11.34048 -11.03849 -10.80790 -10.67529 -10.47921 -10.16327 -10.00651 -9.54938 -9.36022 -9.16125 -8.97818 -8.71360 -7.80154 -6.77166 -6.39378 -3.99644 1.13426 2.25645 2.57521 3.07779 3.27977 3.31946 3.51327 3.59554 3.65234 3.97531 4.30645 4.56738 4.62609 4.71850 4.81134 4.82017 5.01513 5.05592 5.09067 5.10441 5.14216 5.18331 5.27390 5.33887 5.43819 5.46628 5.51843 5.54092 5.61833 5.78770 5.81784 5.82604 5.87042 6.13438 6.24180 6.38601 6.46841 6.50479 6.62738 6.79875 6.97336 7.10978 7.37195 7.57545 7.64096 7.71181 7.99362 8.20722 8.51204 8.96004 9.61214 10.67574 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009658 B = 0.002869 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.463699 B = 9756.087818 C =11967.830697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.063 3.937 4 C -0.129 4.129 5 C 0.123 3.877 6 N -0.736 5.736 7 C 0.537 3.463 8 O -0.511 6.511 9 C -0.257 4.257 10 C 0.020 3.980 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.207 4.207 14 C 0.158 3.842 15 O -0.199 6.199 16 C -0.384 4.384 17 H 0.108 0.892 18 C 0.064 3.936 19 N -0.876 5.876 20 Si 0.904 3.096 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.255 1.255 24 C 0.040 3.960 25 O -0.311 6.311 26 C 0.032 3.968 27 C -0.136 4.136 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.396 0.604 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.138 0.862 42 H 0.280 0.720 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -18.728 10.442 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.014 4.014 4 C -0.167 4.167 5 C -0.001 4.001 6 N -0.389 5.389 7 C 0.327 3.673 8 O -0.387 6.387 9 C -0.278 4.278 10 C 0.001 3.999 11 C -0.147 4.147 12 C -0.033 4.033 13 C -0.226 4.226 14 C 0.104 3.896 15 O -0.103 6.103 16 C -0.460 4.460 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.514 5.514 20 Si 0.729 3.271 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.179 1.179 24 C -0.005 4.005 25 O -0.225 6.225 26 C -0.064 4.064 27 C -0.156 4.156 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.120 0.880 41 H 0.155 0.845 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.656 -17.505 10.317 20.492 hybrid contribution 0.090 0.077 0.348 0.368 sum 2.746 -17.428 10.665 20.616 Atomic orbital electron populations 1.22752 0.80745 1.02754 1.00252 1.87837 1.19954 1.28034 1.95516 1.22407 0.93324 0.84717 1.00998 1.21663 0.93899 0.97219 1.03874 1.21101 0.80233 0.95878 1.02880 1.45909 1.06334 1.09134 1.77538 1.18488 0.87989 0.84015 0.76827 1.91013 1.74680 1.25342 1.47632 1.22645 0.92641 0.99144 1.13385 1.22297 0.98182 0.91577 0.87885 1.18104 1.03857 0.91445 1.01280 1.20568 0.92134 0.96164 0.94425 1.20856 1.05745 0.91068 1.04977 1.18549 0.91696 0.86820 0.92509 1.83581 1.54887 1.27474 1.44376 1.20853 1.23320 0.97115 1.04679 0.87496 1.24470 0.95271 0.99077 0.95122 1.69636 1.30405 1.29855 1.21474 0.86186 0.77993 0.81457 0.81467 1.19837 1.20872 1.17853 1.17925 1.00097 0.85295 0.97180 1.86160 1.59376 1.28928 1.48055 1.22867 0.91491 1.02742 0.89280 1.20687 1.02404 0.90872 1.01602 0.93846 0.89616 0.93964 0.92828 0.92634 0.90428 0.90564 0.91450 0.91153 0.77004 0.85900 0.85875 0.87953 0.84479 0.91019 0.93531 0.89235 0.93578 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.83 10.70 -35.23 -0.38 -4.21 16 3 C 0.06 0.54 5.94 37.15 0.22 0.76 16 4 C -0.13 -1.05 5.70 -26.73 -0.15 -1.20 16 5 C 0.12 1.30 5.67 -4.04 -0.02 1.28 16 6 N -0.74 -7.88 5.55 -61.75 -0.34 -8.22 16 7 C 0.54 7.74 6.78 -13.04 -0.09 7.65 16 8 O -0.51 -9.84 12.35 5.17 0.06 -9.78 16 9 C -0.26 -3.08 9.87 -37.51 -0.37 -3.45 16 10 C 0.02 0.27 9.79 -37.19 -0.36 -0.09 16 11 C -0.15 -2.61 4.49 -105.04 -0.47 -3.08 16 12 C -0.01 -0.29 6.68 -39.13 -0.26 -0.55 16 13 C -0.21 -4.82 9.14 -39.49 -0.36 -5.18 16 14 C 0.16 3.96 6.67 -38.76 -0.26 3.70 16 15 O -0.20 -5.62 8.35 -13.93 -0.12 -5.74 16 16 C -0.38 -11.24 9.94 30.91 0.31 -10.93 16 17 H 0.11 3.17 5.41 -52.49 -0.28 2.89 16 18 C 0.06 1.86 5.49 -17.51 -0.10 1.76 16 19 N -0.88 -25.77 13.96 55.48 0.77 -24.99 16 20 Si 0.90 22.60 28.62 -169.99 -4.86 17.74 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.25 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.04 0.87 6.70 -39.12 -0.26 0.61 16 25 O -0.31 -6.59 10.28 -34.20 -0.35 -6.95 16 26 C 0.03 0.46 9.81 101.05 0.99 1.46 16 27 C -0.14 -2.52 8.77 -38.99 -0.34 -2.86 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 2.96 8.45 -40.82 -0.34 2.62 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.10 1.89 7.10 -52.49 -0.37 1.52 16 41 H 0.14 3.31 5.60 -52.49 -0.29 3.02 16 42 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 46 H 0.12 1.78 6.28 -52.49 -0.33 1.45 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -35.34 387.62 -6.42 -41.76 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.63 Total: 3.34 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.42 Total: -8.80 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.43 Total: -33.21 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.78 Total: -26.67 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.86 Total: 17.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.34 -6.42 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212961040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.744 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds