Wall clock time and date at job start Tue Mar 31 2020 19:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99902 * 2 1 4 4 C 1.53005 * 109.47042 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47072 * 65.00130 * 4 3 2 6 6 C 1.42903 * 113.99780 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46796 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46632 * 65.00256 * 7 6 5 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46914 * 120.00744 * 22 20 18 25 25 H 1.48506 * 109.46956 * 240.00440 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47261 * 299.99916 * 1 2 3 29 29 H 1.09004 * 109.47321 * 60.00029 * 1 2 3 30 30 H 1.09003 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47287 * 59.99777 * 3 2 1 32 32 H 1.09003 * 109.47351 * 299.99984 * 3 2 1 33 33 H 1.09001 * 109.46949 * 304.99847 * 4 3 2 34 34 H 1.09001 * 109.46932 * 184.99717 * 4 3 2 35 35 H 1.08993 * 109.47128 * 60.00115 * 6 5 4 36 36 H 1.08994 * 109.46894 * 299.99660 * 6 5 4 37 37 H 1.08992 * 109.47442 * 305.00268 * 7 6 5 38 38 H 1.09003 * 109.46758 * 184.99569 * 7 6 5 39 39 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 40 40 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 41 41 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 42 42 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 43 43 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 44 44 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 46 46 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3811 0.4192 -1.3245 7 6 5.7245 -0.2350 -2.6644 8 7 5.3566 0.6685 -3.7573 9 6 5.5693 0.3004 -5.0364 10 8 6.0674 -0.7823 -5.2833 11 6 5.2076 1.2049 -6.1273 12 6 5.5490 0.9007 -7.3978 13 6 6.4896 -0.1969 -7.6632 14 6 7.6457 -0.3345 -6.8852 15 6 8.5211 -1.3664 -7.1341 16 6 8.2643 -2.2665 -8.1643 17 8 9.1320 -3.2789 -8.4091 18 6 8.7699 -4.1835 -9.3404 19 1 7.8646 -4.0380 -9.9110 20 6 9.5601 -5.3011 -9.5660 21 7 10.6622 -5.4783 -8.8708 22 14 9.0585 -6.5543 -10.8572 23 1 7.7881 -6.1259 -11.4956 24 1 10.1216 -6.6541 -11.8892 25 1 8.8675 -7.8789 -10.2135 26 6 7.1192 -2.1305 -8.9435 27 6 6.2353 -1.1049 -8.6982 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9785 2.1766 0.0889 35 1 5.7350 -0.2133 -0.5105 36 1 5.8628 1.3950 -1.2623 37 1 5.1728 -1.1696 -2.7644 38 1 6.7946 -0.4384 -2.7057 39 1 4.9600 1.5315 -3.5606 40 1 4.6674 2.1161 -5.9168 41 1 5.1309 1.4639 -8.2190 42 1 7.8478 0.3658 -6.0882 43 1 9.4111 -1.4757 -6.5322 44 1 11.2145 -6.2599 -9.0283 45 1 6.9242 -2.8309 -9.7421 46 1 5.3467 -1.0004 -9.3032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255385936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:41 Heat of formation + Delta-G solvation = -98.088071 kcal Electronic energy + Delta-G solvation = -27514.861633 eV Core-core repulsion = 23371.861730 eV Total energy + Delta-G solvation = -4142.999903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.71690 -38.90644 -38.57087 -37.61485 -36.44459 -34.54647 -32.98028 -32.09339 -31.09853 -30.06590 -29.23188 -27.71815 -26.60882 -25.39832 -23.75331 -22.97037 -22.13765 -21.69918 -20.85357 -19.22230 -17.88346 -17.46062 -17.25487 -17.09668 -16.61162 -16.18095 -15.82961 -15.68059 -15.05699 -14.84901 -14.60904 -14.44155 -14.17610 -13.87997 -13.59723 -13.38645 -13.20420 -13.18284 -12.87122 -12.62522 -12.41872 -12.29911 -12.11816 -11.93475 -11.65997 -11.59463 -11.38331 -11.29058 -10.97072 -10.63566 -10.55492 -10.36625 -10.10248 -10.01071 -9.42754 -9.34945 -9.10606 -8.87125 -8.64860 -7.86426 -6.80732 -6.41800 -3.97363 1.31740 2.47886 2.75935 3.16500 3.18115 3.21365 3.23054 3.36330 3.45388 3.73720 4.00787 4.52116 4.68177 4.74512 4.74835 4.85293 4.91124 4.94347 5.01362 5.04888 5.09047 5.14151 5.21508 5.29023 5.29495 5.32651 5.40734 5.58934 5.65620 5.78970 5.85362 5.90313 6.30352 6.39244 6.49975 6.59617 6.65726 6.70759 6.84002 6.85282 7.09053 7.17568 7.41683 7.50790 7.55360 7.77348 7.97643 8.05349 8.64035 9.04158 9.76661 10.76280 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.001951 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.652211 B =14345.523132 C =14837.343344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.376 6.376 6 C 0.051 3.949 7 C 0.124 3.876 8 N -0.731 5.731 9 C 0.538 3.462 10 O -0.513 6.513 11 C -0.264 4.264 12 C 0.025 3.975 13 C -0.188 4.188 14 C 0.012 3.988 15 C -0.203 4.203 16 C 0.171 3.829 17 O -0.174 6.174 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.251 4.251 27 C -0.042 4.042 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.397 0.603 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.269 0.731 45 H 0.126 0.874 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.243 17.494 16.228 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.296 6.296 6 C -0.026 4.026 7 C 0.000 4.000 8 N -0.385 5.385 9 C 0.327 3.673 10 O -0.389 6.389 11 C -0.285 4.285 12 C 0.005 3.995 13 C -0.189 4.189 14 C -0.006 4.006 15 C -0.222 4.222 16 C 0.116 3.884 17 O -0.076 6.076 18 C -0.465 4.465 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.270 4.270 27 C -0.060 4.060 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.230 0.770 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.131 0.869 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.464 16.207 16.026 27.543 hybrid contribution -0.680 0.168 -0.139 0.714 sum -16.144 16.376 15.887 27.950 Atomic orbital electron populations 1.22756 0.80973 1.03007 0.99820 1.87981 1.19671 1.27164 1.95353 1.22559 0.92400 0.85648 1.00830 1.22516 0.93430 0.97508 0.87955 1.88022 1.21791 1.82082 1.37662 1.22802 0.81965 1.00072 0.97790 1.21280 1.00844 0.94024 0.83810 1.45879 1.65934 1.20981 1.05685 1.18486 0.78521 0.87624 0.82624 1.90998 1.41937 1.22901 1.83106 1.22597 1.10618 1.01770 0.93560 1.22322 0.89538 0.92316 0.95294 1.18296 0.97903 1.00575 1.02110 1.20438 0.91786 0.94952 0.93435 1.20001 1.02922 0.98319 1.00970 1.19526 0.88445 0.88450 0.91941 1.83905 1.39448 1.31108 1.53186 1.21443 1.09859 1.00708 1.14474 0.88851 1.25325 0.95443 0.97360 0.98512 1.70032 1.12623 1.28148 1.38718 0.85630 0.78739 0.79659 0.79309 1.19046 1.20159 1.20130 1.20952 0.97866 1.02970 1.05207 1.20741 0.96962 0.93635 0.94702 0.94242 0.93938 0.89486 0.91909 0.92350 0.92370 0.91770 0.91656 0.92685 0.90663 0.89944 0.76974 0.86245 0.86130 0.88099 0.86864 0.92057 0.85668 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.76 10.67 -40.08 -0.43 -4.19 16 3 C 0.06 0.43 6.32 37.16 0.23 0.67 16 4 C 0.06 0.44 6.32 37.16 0.23 0.67 16 5 O -0.38 -3.71 10.25 -40.08 -0.41 -4.12 16 6 C 0.05 0.42 6.07 37.16 0.23 0.64 16 7 C 0.12 1.42 6.06 -4.04 -0.02 1.39 16 8 N -0.73 -8.69 5.50 -61.75 -0.34 -9.03 16 9 C 0.54 8.34 6.77 -13.04 -0.09 8.25 16 10 O -0.51 -10.40 12.17 5.18 0.06 -10.34 16 11 C -0.26 -3.50 9.90 -37.50 -0.37 -3.87 16 12 C 0.02 0.36 9.80 -37.19 -0.36 0.00 16 13 C -0.19 -3.58 4.54 -105.03 -0.48 -4.06 16 14 C 0.01 0.26 6.59 -39.15 -0.26 0.00 16 15 C -0.20 -4.76 9.97 -39.47 -0.39 -5.15 16 16 C 0.17 4.45 6.66 -38.88 -0.26 4.19 16 17 O -0.17 -5.20 9.74 0.74 0.01 -5.20 16 18 C -0.39 -11.26 9.48 30.91 0.29 -10.97 16 19 H 0.09 2.52 5.18 -52.49 -0.27 2.25 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.85 13.67 55.48 0.76 -25.09 16 22 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.25 -5.87 9.14 -39.47 -0.36 -6.23 16 27 C -0.04 -0.84 9.78 -39.15 -0.38 -1.23 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 3.63 8.45 -40.82 -0.34 3.29 16 40 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.10 1.87 7.02 -52.48 -0.37 1.51 16 43 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.13 2.90 5.62 -52.49 -0.29 2.60 16 46 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -36.44 393.18 -7.18 -43.62 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.76 Total: 5.75 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -0.98 Total: -13.40 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.42 Total: -34.12 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.77 Total: -23.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.44 -7.18 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255385936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.467 kcal (2) G-P(sol) polarization free energy of solvation -36.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds