Wall clock time and date at job start Tue Mar 31 2020 19:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99902 * 2 1 4 4 C 1.53005 * 109.47042 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47072 * 65.00130 * 4 3 2 6 6 C 1.42903 * 113.99780 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46796 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46632 * 65.00256 * 7 6 5 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47291 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46914 * 120.00744 * 22 20 18 25 25 H 1.48506 * 109.46956 * 240.00440 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47261 * 299.99916 * 1 2 3 29 29 H 1.09004 * 109.47321 * 60.00029 * 1 2 3 30 30 H 1.09003 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47287 * 59.99777 * 3 2 1 32 32 H 1.09003 * 109.47351 * 299.99984 * 3 2 1 33 33 H 1.09001 * 109.46949 * 304.99847 * 4 3 2 34 34 H 1.09001 * 109.46932 * 184.99717 * 4 3 2 35 35 H 1.08993 * 109.47128 * 60.00115 * 6 5 4 36 36 H 1.08994 * 109.46894 * 299.99660 * 6 5 4 37 37 H 1.08992 * 109.47442 * 305.00268 * 7 6 5 38 38 H 1.09003 * 109.46758 * 184.99569 * 7 6 5 39 39 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 40 40 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 41 41 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 42 42 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 43 43 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 44 44 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 46 46 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3811 0.4192 -1.3245 7 6 5.7245 -0.2350 -2.6644 8 7 5.3566 0.6685 -3.7573 9 6 5.5693 0.3004 -5.0364 10 8 6.0674 -0.7823 -5.2833 11 6 5.2076 1.2049 -6.1273 12 6 5.5490 0.9007 -7.3978 13 6 6.4896 -0.1969 -7.6632 14 6 7.6457 -0.3345 -6.8852 15 6 8.5211 -1.3664 -7.1341 16 6 8.2643 -2.2665 -8.1643 17 8 9.1320 -3.2789 -8.4091 18 6 8.7699 -4.1835 -9.3404 19 1 7.8646 -4.0380 -9.9110 20 6 9.5601 -5.3011 -9.5660 21 7 10.6622 -5.4783 -8.8708 22 14 9.0585 -6.5543 -10.8572 23 1 7.7881 -6.1259 -11.4956 24 1 10.1216 -6.6541 -11.8892 25 1 8.8675 -7.8789 -10.2135 26 6 7.1192 -2.1305 -8.9435 27 6 6.2353 -1.1049 -8.6982 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9785 2.1766 0.0889 35 1 5.7350 -0.2133 -0.5105 36 1 5.8628 1.3950 -1.2623 37 1 5.1728 -1.1696 -2.7644 38 1 6.7946 -0.4384 -2.7057 39 1 4.9600 1.5315 -3.5606 40 1 4.6674 2.1161 -5.9168 41 1 5.1309 1.4639 -8.2190 42 1 7.8478 0.3658 -6.0882 43 1 9.4111 -1.4757 -6.5322 44 1 11.2145 -6.2599 -9.0283 45 1 6.9242 -2.8309 -9.7421 46 1 5.3467 -1.0004 -9.3032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255385936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:40 Heat of formation + Delta-G solvation = -125.531531 kcal Electronic energy + Delta-G solvation = -27516.051671 eV Core-core repulsion = 23371.861730 eV Total energy + Delta-G solvation = -4144.189941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09230 -40.39270 -39.44190 -38.40714 -38.02801 -35.66945 -34.57882 -33.91138 -31.81157 -31.80487 -30.21764 -29.11813 -27.41146 -27.12165 -24.92510 -23.57818 -23.48196 -23.19975 -22.26606 -20.55743 -19.75550 -18.87574 -18.12449 -18.06792 -17.71557 -17.13869 -16.49763 -16.41313 -16.34439 -16.23136 -15.99666 -15.86387 -15.56663 -15.45608 -15.07950 -14.59384 -14.46363 -14.39411 -14.27611 -13.84384 -13.70081 -13.55881 -13.21989 -13.05510 -12.96796 -12.64250 -12.52322 -12.33468 -12.22720 -12.20329 -12.09037 -11.93924 -11.22926 -10.97058 -10.71559 -10.63890 -10.54674 -10.37913 -10.01152 -9.55014 -8.54396 -8.48123 -6.15376 0.01231 0.72791 1.13854 1.33459 1.44895 1.52967 2.17220 2.38314 2.52269 2.65743 2.87496 2.89001 3.21418 3.53524 3.88530 4.02739 4.08851 4.14054 4.17854 4.19367 4.21327 4.25231 4.44077 4.45807 4.49310 4.55092 4.56111 4.59051 4.61634 4.72333 4.78241 4.82239 4.86157 4.89604 5.06881 5.10812 5.26987 5.28186 5.47715 5.55499 5.69070 5.73480 5.86398 6.03103 6.16142 6.26245 6.30520 6.74959 6.95704 7.48274 7.78094 8.75176 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.001951 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.652211 B =14345.523132 C =14837.343344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.056 3.944 4 C 0.058 3.942 5 O -0.403 6.403 6 C 0.060 3.940 7 C 0.122 3.878 8 N -0.711 5.711 9 C 0.523 3.477 10 O -0.571 6.571 11 C -0.230 4.230 12 C 0.004 3.996 13 C -0.160 4.160 14 C 0.015 3.985 15 C -0.221 4.221 16 C 0.126 3.874 17 O -0.231 6.231 18 C -0.414 4.414 19 H 0.102 0.898 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.023 2.977 23 H -0.251 1.251 24 H -0.265 1.265 25 H -0.269 1.269 26 C -0.260 4.260 27 C -0.049 4.049 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.415 0.585 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.273 0.727 45 H 0.119 0.881 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.764 21.155 16.782 33.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.020 4.020 4 C -0.018 4.018 5 O -0.323 6.323 6 C -0.017 4.017 7 C -0.003 4.003 8 N -0.364 5.364 9 C 0.314 3.686 10 O -0.452 6.452 11 C -0.250 4.250 12 C -0.015 4.015 13 C -0.161 4.161 14 C -0.004 4.004 15 C -0.241 4.241 16 C 0.075 3.925 17 O -0.138 6.138 18 C -0.490 4.490 19 H 0.119 0.881 20 C -0.223 4.223 21 N -0.559 5.559 22 Si 0.841 3.159 23 H -0.174 1.174 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.279 4.279 27 C -0.067 4.067 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.252 0.748 40 H 0.190 0.810 41 H 0.187 0.813 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.082 0.918 45 H 0.137 0.863 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.049 19.975 16.634 32.227 hybrid contribution 0.120 -0.552 0.028 0.565 sum -18.929 19.423 16.662 31.831 Atomic orbital electron populations 1.22880 0.79771 1.03430 1.00894 1.87929 1.21259 1.29103 1.95611 1.22772 0.92342 0.84812 1.02061 1.22745 0.93626 0.98777 0.86702 1.87973 1.22306 1.82792 1.39233 1.22726 0.81876 1.01330 0.95756 1.21287 1.00072 0.93352 0.85568 1.45762 1.64250 1.21511 1.04832 1.19145 0.77920 0.87336 0.84229 1.91003 1.44664 1.25431 1.84085 1.23054 1.08266 1.01868 0.91806 1.22574 0.89866 0.91596 0.97493 1.18890 0.97387 1.00405 0.99423 1.20686 0.91672 0.94164 0.93842 1.20193 1.03597 0.99446 1.00814 1.20015 0.89794 0.88773 0.93870 1.83873 1.41701 1.33055 1.55147 1.21925 1.10640 1.01482 1.14996 0.88053 1.26685 0.95209 0.99324 1.01050 1.70181 1.14552 1.29514 1.41649 0.84483 0.79067 0.76212 0.76101 1.17417 1.18953 1.19366 1.21090 0.97845 1.04105 1.04852 1.21182 0.97490 0.92405 0.95607 0.92439 0.93531 0.89538 0.89408 0.92265 0.92519 0.88815 0.90740 0.89923 0.93613 0.90587 0.74829 0.80959 0.81324 0.86123 0.87981 0.91773 0.86279 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.69 10.67 -144.34 -1.54 -9.23 16 3 C 0.06 0.65 6.32 71.98 0.45 1.10 16 4 C 0.06 0.64 6.32 71.98 0.45 1.09 16 5 O -0.40 -6.99 10.25 -144.34 -1.48 -8.47 16 6 C 0.06 0.84 6.07 71.98 0.44 1.28 16 7 C 0.12 2.64 6.06 86.38 0.52 3.16 16 8 N -0.71 -14.76 5.50 -467.49 -2.57 -17.33 16 9 C 0.52 14.68 6.77 86.32 0.58 15.26 16 10 O -0.57 -22.75 12.17 -4.40 -0.05 -22.80 16 11 C -0.23 -4.76 9.90 23.62 0.23 -4.52 16 12 C 0.00 0.09 9.80 23.82 0.23 0.33 16 13 C -0.16 -5.73 4.54 -20.13 -0.09 -5.82 16 14 C 0.01 0.60 6.59 22.55 0.15 0.74 16 15 C -0.22 -11.00 9.97 22.35 0.22 -10.78 16 16 C 0.13 7.02 6.66 22.72 0.15 7.17 16 17 O -0.23 -15.07 9.74 -20.28 -0.20 -15.27 16 18 C -0.41 -25.69 9.48 67.94 0.64 -25.05 16 19 H 0.10 5.80 5.18 -2.91 -0.02 5.79 16 20 C -0.03 -1.52 5.49 84.86 0.47 -1.05 16 21 N -0.92 -59.08 13.67 21.62 0.30 -58.78 16 22 Si 1.02 44.97 29.55 68.60 2.03 47.00 16 23 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 C -0.26 -12.57 9.14 22.34 0.20 -12.36 16 27 C -0.05 -1.88 9.78 22.55 0.22 -1.66 16 28 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.41 5.70 8.45 -92.71 -0.78 4.91 16 40 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.12 4.34 7.02 -2.91 -0.02 4.32 16 43 H 0.10 5.10 8.06 -2.91 -0.02 5.08 16 44 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 45 H 0.12 5.77 5.62 -2.91 -0.02 5.75 16 46 H 0.15 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -89.31 393.18 2.83 -86.48 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.21 Total: 27.96 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 6.14 Total: -29.56 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.27 Total: -76.11 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -3.27 Total: -55.77 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -89.31 2.83 -86.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255385936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.051 kcal (2) G-P(sol) polarization free energy of solvation -89.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds