Wall clock time and date at job start Tue Mar 31 2020 19:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99949 * 2 1 4 4 O 1.20826 * 120.00225 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00144 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47098 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.50783 * 305.08664 * 6 5 3 8 8 C 1.53096 * 109.50452 * 184.99923 * 6 5 3 9 9 N 1.47012 * 109.25961 * 183.21870 * 8 6 5 10 10 C 1.46894 * 111.00253 * 182.39412 * 9 8 6 11 11 C 1.50706 * 109.47133 * 169.99807 * 10 9 8 12 12 C 1.38304 * 119.92743 * 90.00030 * 11 10 9 13 13 C 1.38097 * 120.06541 * 179.97438 * 12 11 10 14 14 C 1.38883 * 119.93296 * 0.02562 * 13 12 11 15 15 O 1.35755 * 120.06887 * 180.02562 * 14 13 12 16 16 C 1.34833 * 117.00051 * 5.51954 * 15 14 13 17 17 H 1.08002 * 119.99709 * 354.65284 * 16 15 14 18 18 C 1.38650 * 119.99870 * 174.91769 * 16 15 14 19 19 N 1.31563 * 120.00078 * 359.72962 * 18 16 15 20 20 Si 1.86803 * 119.99964 * 179.72513 * 18 16 15 21 21 H 1.48499 * 109.46828 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46779 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47120 * 240.00136 * 20 18 16 24 24 C 1.38875 * 119.86251 * 0.26747 * 14 13 12 25 25 C 1.38104 * 119.92568 * 359.43312 * 24 14 13 26 26 C 1.47013 * 110.75165 * 58.61405 * 9 8 6 27 27 C 1.53097 * 109.26066 * 301.38565 * 26 9 8 28 28 O 1.43015 * 109.50421 * 65.22226 * 6 5 3 29 29 H 1.09002 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47617 * 299.99643 * 1 2 3 31 31 H 1.09004 * 109.47147 * 60.00165 * 1 2 3 32 32 H 1.09002 * 109.46995 * 60.00078 * 5 3 2 33 33 H 1.08998 * 109.47167 * 300.00203 * 5 3 2 34 34 H 1.09007 * 109.50725 * 63.28483 * 8 6 5 35 35 H 1.09000 * 109.50951 * 303.15254 * 8 6 5 36 36 H 1.09001 * 109.47555 * 49.99895 * 10 9 8 37 37 H 1.08999 * 109.47501 * 289.99555 * 10 9 8 38 38 H 1.07999 * 119.96893 * 0.02562 * 12 11 10 39 39 H 1.08004 * 120.03291 * 180.02562 * 13 12 11 40 40 H 0.96998 * 120.00013 * 179.97438 * 19 18 16 41 41 H 1.07997 * 120.03846 * 179.72323 * 24 14 13 42 42 H 1.08005 * 119.96075 * 180.27121 * 25 24 14 43 43 H 1.08998 * 109.50294 * 61.32404 * 26 9 8 44 44 H 1.09006 * 109.50462 * 181.45176 * 26 9 8 45 45 H 1.08992 * 109.50698 * 296.91628 * 27 26 9 46 46 H 1.09001 * 109.50449 * 176.77716 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7421 -0.0002 7 1 3.5372 3.2581 -0.8414 8 6 5.5237 2.8247 -0.1254 9 7 5.9410 4.2322 -0.0480 10 6 7.3940 4.3607 -0.2210 11 6 7.7541 5.8153 -0.3818 12 6 8.0516 6.5797 0.7318 13 6 8.3824 7.9127 0.5877 14 6 8.4156 8.4857 -0.6770 15 8 8.7409 9.7957 -0.8219 16 6 9.1319 10.4556 0.2870 17 1 9.0929 9.9658 1.2488 18 6 9.5788 11.7647 0.1933 19 7 9.6265 12.3612 -0.9784 20 14 10.1133 12.6815 1.7306 21 1 9.9656 11.7945 2.9123 22 1 11.5343 13.0908 1.5939 23 1 9.2655 13.8878 1.9074 24 6 8.1104 7.7170 -1.7926 25 6 7.7864 6.3830 -1.6425 26 6 5.5060 4.8355 1.2201 27 6 3.9825 4.7329 1.3318 28 8 3.5931 3.3610 1.2232 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 3.9564 0.7806 -0.8892 33 1 3.9557 0.7810 0.8908 34 1 5.8335 2.4053 -1.0826 35 1 5.9865 2.2627 0.6859 36 1 7.7045 3.8094 -1.1086 37 1 7.9015 3.9555 0.6544 38 1 8.0260 6.1334 1.7149 39 1 8.6150 8.5090 1.4576 40 1 9.9388 13.2772 -1.0439 41 1 8.1309 8.1608 -2.7770 42 1 7.5532 5.7836 -2.5102 43 1 5.9686 4.3057 2.0528 44 1 5.8029 5.8841 1.2450 45 1 3.5193 5.3073 0.5297 46 1 3.6609 5.1273 2.2957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267697550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:47 Heat of formation + Delta-G solvation = -144.916924 kcal Electronic energy + Delta-G solvation = -28286.799582 eV Core-core repulsion = 24141.769027 eV Total energy + Delta-G solvation = -4145.030555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59235 -40.94361 -40.33690 -38.54044 -37.49668 -36.42621 -34.30504 -34.07907 -31.80408 -31.69236 -30.29689 -28.68019 -27.73726 -26.97039 -25.10477 -24.21423 -23.53245 -22.13895 -21.52845 -21.30598 -19.82812 -18.81810 -18.59025 -17.89520 -17.67034 -17.22339 -16.96252 -16.52632 -16.46753 -16.20378 -15.74712 -15.69450 -15.49815 -15.35620 -14.88062 -14.79482 -14.47262 -14.38261 -14.19506 -14.08766 -13.60317 -13.31359 -13.12155 -12.99075 -12.89083 -12.78901 -12.57857 -12.41522 -12.27424 -12.22067 -12.11144 -11.88309 -11.77944 -11.61505 -11.44400 -11.16306 -10.80248 -10.59051 -9.74695 -9.31960 -8.87937 -8.47275 -6.15302 0.61745 0.68416 1.24372 1.34417 1.42598 1.52678 1.76209 2.17208 2.68931 2.74953 2.99734 3.28193 3.53976 3.70005 3.75133 3.95570 4.03886 4.07483 4.14247 4.20384 4.21635 4.27360 4.32594 4.33627 4.45999 4.48983 4.55939 4.62324 4.63692 4.69153 4.73773 4.77342 4.82055 4.88961 4.96040 5.05203 5.10474 5.15839 5.31983 5.42393 5.58808 5.72714 5.79347 6.01935 6.03725 6.07277 6.20487 6.26382 6.77953 6.97665 7.79389 8.76254 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.026684 B = 0.001954 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.065368 B =14325.225814 C =14636.125875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.458 3.542 4 O -0.536 6.536 5 C -0.099 4.099 6 C 0.100 3.900 7 H 0.056 0.944 8 C 0.029 3.971 9 N -0.546 5.546 10 C 0.118 3.882 11 C -0.154 4.154 12 C -0.061 4.061 13 C -0.243 4.243 14 C 0.114 3.886 15 O -0.234 6.234 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.207 4.207 25 C -0.046 4.046 26 C 0.020 3.980 27 C 0.070 3.930 28 O -0.392 6.392 29 H 0.132 0.868 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.159 0.841 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.272 0.728 41 H 0.110 0.890 42 H 0.147 0.853 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 -28.230 4.141 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.303 3.697 4 O -0.425 6.425 5 C -0.136 4.136 6 C 0.042 3.958 7 H 0.074 0.926 8 C -0.098 4.098 9 N -0.271 5.271 10 C -0.008 4.008 11 C -0.155 4.155 12 C -0.080 4.080 13 C -0.262 4.262 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.226 4.226 25 C -0.065 4.065 26 C -0.108 4.108 27 C -0.007 4.007 28 O -0.311 6.311 29 H 0.150 0.850 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.176 0.824 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.152 0.848 39 H 0.134 0.866 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.165 0.835 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.026 -27.471 3.620 30.206 hybrid contribution 0.433 1.183 0.876 1.534 sum -11.593 -26.289 4.496 29.081 Atomic orbital electron populations 1.23483 0.75231 1.05537 1.02162 1.86488 1.24654 1.32989 1.84020 1.24180 0.93113 0.81022 0.71423 1.90706 1.68072 1.37559 1.46124 1.21519 0.86368 0.96405 1.09310 1.21989 0.93811 0.92432 0.87593 0.92635 1.22801 0.94279 0.88667 1.04093 1.62134 1.14317 1.16472 1.34194 1.20834 0.86219 0.91465 1.02326 1.19576 1.06612 0.96801 0.92477 1.20918 0.96171 0.91923 0.98957 1.21208 1.11219 0.97473 0.96342 1.19956 0.93989 0.84598 0.95129 1.83945 1.75319 1.18411 1.36442 1.21845 1.44162 0.96424 0.86344 0.88148 1.26591 0.96496 0.96700 1.02376 1.70195 1.46052 1.13672 1.26035 0.84529 0.78187 0.77842 0.75637 1.17470 1.19298 1.19418 1.20475 1.10570 0.95214 0.96377 1.20853 0.95355 0.92228 0.98038 1.22771 0.96204 1.01073 0.90733 1.22604 0.93230 0.82517 1.02387 1.87957 1.79162 1.25122 1.38866 0.84982 0.92596 0.92244 0.82390 0.84897 0.86864 0.92397 0.88051 0.93132 0.84832 0.86626 0.91884 0.87156 0.83546 0.93278 0.90421 0.93855 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -5.62 10.57 -51.39 -0.54 -6.16 16 3 C 0.46 8.47 7.84 71.24 0.56 9.03 16 4 O -0.54 -14.41 15.18 26.97 0.41 -14.00 16 5 C -0.10 -1.11 5.53 29.85 0.16 -0.95 16 6 C 0.10 1.77 2.35 30.63 0.07 1.84 16 7 H 0.06 1.22 7.95 -2.39 -0.02 1.21 16 8 C 0.03 0.42 4.93 86.31 0.43 0.85 16 9 N -0.55 -11.46 4.72 -899.78 -4.24 -15.70 16 10 C 0.12 2.44 5.11 85.56 0.44 2.88 16 11 C -0.15 -4.55 4.90 -19.83 -0.10 -4.64 16 12 C -0.06 -2.04 7.92 22.25 0.18 -1.86 16 13 C -0.24 -10.53 9.17 22.39 0.21 -10.32 16 14 C 0.11 5.69 6.65 22.58 0.15 5.84 16 15 O -0.23 -14.29 9.76 -22.82 -0.22 -14.51 16 16 C -0.41 -24.19 9.49 67.92 0.64 -23.55 16 17 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 18 C -0.02 -1.40 5.49 84.83 0.47 -0.93 16 19 N -0.92 -57.09 13.67 21.61 0.30 -56.79 16 20 Si 1.02 43.24 29.55 68.60 2.03 45.26 16 21 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 24 C -0.21 -8.85 9.99 22.39 0.22 -8.63 16 25 C -0.05 -1.52 9.69 22.25 0.22 -1.31 16 26 C 0.02 0.46 5.27 86.31 0.46 0.91 16 27 C 0.07 1.61 7.01 72.01 0.50 2.12 16 28 O -0.39 -9.22 9.72 -135.42 -1.32 -10.53 16 29 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 32 H 0.16 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 1.09 8.09 -2.38 -0.02 1.07 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.68 7.98 -2.39 -0.02 1.66 16 37 H 0.05 0.94 8.06 -2.39 -0.02 0.92 16 38 H 0.13 3.62 8.00 -2.91 -0.02 3.60 16 39 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 42 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 2.05 6.01 -2.38 -0.01 2.04 16 45 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -79.74 381.00 3.19 -76.55 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.98 Total: 23.09 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 5.80 Total: -27.20 kcal Atomic # 7 Polarization: -68.55 SS G_CDS: -3.95 Total: -72.49 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.67 Total: -45.20 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -79.74 3.19 -76.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267697550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.368 kcal (2) G-P(sol) polarization free energy of solvation -79.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds