Wall clock time and date at job start Tue Mar 31 2020 19:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99797 * 2 1 4 4 C 1.53002 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47064 * 305.00146 * 4 3 2 6 6 O 1.42900 * 109.46916 * 65.00058 * 4 3 2 7 7 C 1.53002 * 109.47137 * 184.99823 * 4 3 2 8 8 C 1.53000 * 109.47279 * 175.00068 * 7 4 3 9 9 N 1.46495 * 109.47327 * 179.97438 * 8 7 4 10 10 C 1.34781 * 120.00039 * 179.97438 * 9 8 7 11 11 O 1.21721 * 119.99516 * 0.02562 * 10 9 8 12 12 C 1.46253 * 119.99694 * 179.72373 * 10 9 8 13 13 C 1.35019 * 119.99700 * 180.27756 * 12 10 9 14 14 C 1.46964 * 120.00335 * 180.02562 * 13 12 10 15 15 C 1.40025 * 120.09581 * 359.71755 * 14 13 12 16 16 C 1.37595 * 119.89608 * 179.77039 * 15 14 13 17 17 C 1.39177 * 120.10243 * 0.51209 * 16 15 14 18 18 O 1.35561 * 119.90215 * 179.76318 * 17 16 15 19 19 C 1.34788 * 117.00372 * 174.42383 * 18 17 16 20 20 H 1.08000 * 119.99478 * 5.05070 * 19 18 17 21 21 C 1.38714 * 120.00043 * 185.05895 * 19 18 17 22 22 N 1.31515 * 120.00435 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00031 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47066 * 89.99341 * 23 21 19 25 25 H 1.48501 * 109.47272 * 210.00006 * 23 21 19 26 26 H 1.48506 * 109.46700 * 329.99666 * 23 21 19 27 27 C 1.39177 * 120.20074 * 359.74419 * 17 16 15 28 28 C 1.37603 * 120.10311 * 359.97438 * 27 17 16 29 29 H 1.08999 * 109.47567 * 300.00370 * 1 2 3 30 30 H 1.09004 * 109.47391 * 60.00454 * 1 2 3 31 31 H 1.09006 * 109.47018 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47200 * 59.99661 * 3 2 1 33 33 H 1.09000 * 109.47192 * 299.99639 * 3 2 1 34 34 H 0.96699 * 114.00472 * 60.00143 * 6 4 3 35 35 H 1.08993 * 109.47079 * 54.99750 * 7 4 3 36 36 H 1.09007 * 109.46919 * 295.00159 * 7 4 3 37 37 H 1.09002 * 109.46741 * 59.99804 * 8 7 4 38 38 H 1.09000 * 109.46943 * 300.00499 * 8 7 4 39 39 H 0.96997 * 119.99912 * 0.02562 * 9 8 7 40 40 H 1.07999 * 120.00058 * 0.28436 * 12 10 9 41 41 H 1.08009 * 120.00226 * 0.02562 * 13 12 10 42 42 H 1.08002 * 120.05521 * 0.02748 * 15 14 13 43 43 H 1.08004 * 119.94983 * 180.23538 * 16 15 14 44 44 H 0.96994 * 120.00121 * 180.02562 * 22 21 19 45 45 H 1.07997 * 119.95049 * 179.97438 * 27 17 16 46 46 H 1.07992 * 120.04891 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5686 0.8427 6 8 3.9658 0.5793 -1.2201 7 6 4.1572 2.5770 0.1263 8 6 5.6765 2.4477 0.2524 9 7 6.2719 3.7808 0.3721 10 6 7.6074 3.9137 0.4959 11 8 8.3187 2.9261 0.5078 12 6 8.2023 5.2450 0.6094 13 6 9.5406 5.3785 0.7278 14 6 10.1385 6.7161 0.8424 15 6 9.3226 7.8539 0.8230 16 6 9.8863 9.1040 0.9353 17 6 11.2661 9.2392 1.0573 18 8 11.8175 10.4731 1.1629 19 6 13.1441 10.5328 1.3940 20 1 13.7315 9.6266 1.4055 21 6 13.7547 11.7581 1.6173 22 7 13.0395 12.8617 1.6030 23 14 15.5931 11.8408 1.9384 24 1 16.3142 11.9964 0.6495 25 1 15.8907 13.0016 2.8155 26 1 16.0358 10.5900 2.6054 27 6 12.0815 8.1114 1.0716 28 6 11.5261 6.8569 0.9657 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.7191 1.0746 -2.0132 35 1 3.7601 3.0737 1.0116 36 1 3.9148 3.1645 -0.7593 37 1 6.0735 1.9510 -0.6330 38 1 5.9188 1.8601 1.1379 39 1 5.7049 4.5677 0.3630 40 1 7.5710 6.1212 0.5985 41 1 10.1719 4.5021 0.7383 42 1 8.2521 7.7502 0.7242 43 1 9.2574 9.9820 0.9243 44 1 13.4666 13.7185 1.7588 45 1 13.1517 8.2210 1.1661 46 1 12.1596 5.9823 0.9773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270809452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:28 Heat of formation + Delta-G solvation = -128.158271 kcal Electronic energy + Delta-G solvation = -26254.879690 eV Core-core repulsion = 22110.575845 eV Total energy + Delta-G solvation = -4144.303845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.72772 -39.20543 -38.96609 -37.28369 -36.88986 -35.08756 -33.21343 -32.35101 -32.00617 -30.44185 -29.30510 -28.08722 -26.58365 -25.67879 -24.10814 -22.67692 -22.13704 -22.02299 -20.72563 -19.35241 -18.20280 -17.41526 -17.16024 -17.11892 -16.81058 -16.58824 -16.12508 -15.80410 -15.03970 -14.92776 -14.83747 -14.74563 -14.39950 -13.99671 -13.83434 -13.72406 -13.49151 -13.21004 -13.04573 -12.68088 -12.62333 -12.53240 -11.94661 -11.93758 -11.82943 -11.72418 -11.67577 -11.29155 -11.13365 -11.08438 -10.69521 -10.59662 -10.54227 -10.24826 -9.78206 -9.61615 -9.50364 -9.14834 -8.85651 -8.39262 -7.12428 -6.66076 -4.21043 1.06742 2.12531 2.55539 2.90721 3.03377 3.04409 3.09185 3.38334 3.58532 3.81606 3.91506 4.22264 4.42787 4.50148 4.55529 4.63980 4.71110 4.82715 4.84117 4.89627 4.91506 5.03229 5.05994 5.12843 5.17437 5.26694 5.35402 5.52169 5.58722 5.66040 5.66968 5.75871 6.00340 6.11034 6.32953 6.45937 6.48475 6.57040 6.59958 6.78257 6.91006 7.12091 7.19881 7.22764 7.27216 7.52958 7.62939 7.79285 8.34172 8.78783 9.45532 10.50538 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.041407 B = 0.001336 C = 0.001303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.058584 B =20951.303769 C =21491.343319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.029 3.971 4 C 0.113 3.887 5 H 0.110 0.890 6 O -0.549 6.549 7 C -0.162 4.162 8 C 0.125 3.875 9 N -0.737 5.737 10 C 0.555 3.445 11 O -0.557 6.557 12 C -0.284 4.284 13 C 0.039 3.961 14 C -0.199 4.199 15 C -0.043 4.043 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.162 6.162 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.944 3.056 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.265 1.265 27 C -0.242 4.242 28 C -0.034 4.034 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.374 0.626 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.399 0.601 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.274 0.726 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 -17.239 -2.921 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C -0.048 4.048 4 C 0.053 3.947 5 H 0.128 0.872 6 O -0.354 6.354 7 C -0.200 4.200 8 C 0.002 3.998 9 N -0.389 5.389 10 C 0.347 3.653 11 O -0.437 6.437 12 C -0.305 4.305 13 C 0.019 3.981 14 C -0.200 4.200 15 C -0.061 4.061 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.063 6.063 19 C -0.469 4.469 20 H 0.115 0.885 21 C -0.164 4.164 22 N -0.485 5.485 23 Si 0.768 3.232 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.189 1.189 27 C -0.261 4.261 28 C -0.053 4.053 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.103 -18.039 -2.477 27.123 hybrid contribution 0.008 1.248 -0.165 1.259 sum -20.095 -16.791 -2.641 26.319 Atomic orbital electron populations 1.22784 0.80936 1.03014 0.99955 1.87962 1.19669 1.27063 1.95363 1.23323 0.94928 0.85545 1.01041 1.21828 0.90201 0.93519 0.89113 0.87170 1.86679 1.80777 1.52707 1.15218 1.22436 0.96080 0.97705 1.03795 1.21151 0.91001 0.84823 1.02867 1.45853 1.07623 1.08806 1.76574 1.18420 0.81478 0.90001 0.75433 1.90788 1.61105 1.40529 1.51305 1.22422 0.96384 0.95188 1.16484 1.22296 0.94392 0.95847 0.85584 1.18470 0.93468 0.91860 1.16251 1.20875 0.98356 0.91196 0.95709 1.20146 0.92269 0.97493 1.11972 1.19614 0.92288 0.85658 0.91415 1.83900 1.25154 1.22799 1.74492 1.21482 0.80147 0.95222 1.50045 0.88527 1.25389 1.00909 0.94063 0.96036 1.70013 1.36607 0.98298 1.43566 0.85653 0.79904 0.78753 0.78864 1.19621 1.20029 1.18926 1.21104 1.00767 0.92010 1.12242 1.20993 0.93453 0.96555 0.94287 0.94025 0.94056 0.89419 0.92253 0.92869 0.77936 0.89964 0.90534 0.90764 0.91531 0.76736 0.85922 0.85912 0.86435 0.86145 0.91595 0.85110 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.04 10.67 -40.08 -0.43 -3.47 16 3 C 0.03 0.16 5.57 37.16 0.21 0.36 16 4 C 0.11 0.70 3.25 -26.73 -0.09 0.62 16 5 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 6 O -0.55 -4.32 12.84 -40.08 -0.51 -4.83 16 7 C -0.16 -0.82 5.01 -26.73 -0.13 -0.95 16 8 C 0.13 1.11 5.57 -4.04 -0.02 1.09 16 9 N -0.74 -7.22 5.55 -61.76 -0.34 -7.56 16 10 C 0.55 7.75 7.74 -13.04 -0.10 7.65 16 11 O -0.56 -9.93 16.23 5.17 0.08 -9.84 16 12 C -0.28 -3.82 9.41 -37.51 -0.35 -4.18 16 13 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 14 C -0.20 -3.39 5.87 -105.03 -0.62 -4.00 16 15 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 16 C -0.20 -3.95 9.97 -39.47 -0.39 -4.34 16 17 C 0.17 3.81 6.66 -38.88 -0.26 3.55 16 18 O -0.16 -4.39 9.74 0.75 0.01 -4.39 16 19 C -0.39 -10.42 9.48 30.91 0.29 -10.13 16 20 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.85 -23.74 13.67 55.48 0.76 -22.98 16 23 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 26 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 27 C -0.24 -4.99 9.14 -39.46 -0.36 -5.35 16 28 C -0.03 -0.61 9.78 -39.15 -0.38 -1.00 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.37 1.58 9.05 45.56 0.41 1.99 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.40 2.73 8.45 -40.82 -0.34 2.39 16 40 H 0.12 1.39 6.07 -52.49 -0.32 1.07 16 41 H 0.12 1.87 7.52 -52.48 -0.39 1.48 16 42 H 0.12 1.59 6.16 -52.49 -0.32 1.27 16 43 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.13 2.67 5.62 -52.49 -0.29 2.38 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -33.69 395.95 -7.13 -40.82 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.73 Total: 7.15 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.91 Total: -15.28 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.42 Total: -30.54 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.85 Total: -22.53 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.69 -7.13 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270809452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.339 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds