Wall clock time and date at job start Tue Mar 31 2020 19:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99797 * 2 1 4 4 C 1.53002 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47064 * 305.00146 * 4 3 2 6 6 O 1.42900 * 109.46916 * 65.00058 * 4 3 2 7 7 C 1.53002 * 109.47137 * 184.99823 * 4 3 2 8 8 C 1.53000 * 109.47279 * 175.00068 * 7 4 3 9 9 N 1.46495 * 109.47327 * 179.97438 * 8 7 4 10 10 C 1.34781 * 120.00039 * 179.97438 * 9 8 7 11 11 O 1.21721 * 119.99516 * 0.02562 * 10 9 8 12 12 C 1.46253 * 119.99694 * 179.72373 * 10 9 8 13 13 C 1.35019 * 119.99700 * 180.27756 * 12 10 9 14 14 C 1.46964 * 120.00335 * 180.02562 * 13 12 10 15 15 C 1.40025 * 120.09581 * 359.71755 * 14 13 12 16 16 C 1.37595 * 119.89608 * 179.77039 * 15 14 13 17 17 C 1.39177 * 120.10243 * 0.51209 * 16 15 14 18 18 O 1.35561 * 119.90215 * 179.76318 * 17 16 15 19 19 C 1.34788 * 117.00372 * 174.42383 * 18 17 16 20 20 H 1.08000 * 119.99478 * 5.05070 * 19 18 17 21 21 C 1.38714 * 120.00043 * 185.05895 * 19 18 17 22 22 N 1.31515 * 120.00435 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00031 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47066 * 89.99341 * 23 21 19 25 25 H 1.48501 * 109.47272 * 210.00006 * 23 21 19 26 26 H 1.48506 * 109.46700 * 329.99666 * 23 21 19 27 27 C 1.39177 * 120.20074 * 359.74419 * 17 16 15 28 28 C 1.37603 * 120.10311 * 359.97438 * 27 17 16 29 29 H 1.08999 * 109.47567 * 300.00370 * 1 2 3 30 30 H 1.09004 * 109.47391 * 60.00454 * 1 2 3 31 31 H 1.09006 * 109.47018 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47200 * 59.99661 * 3 2 1 33 33 H 1.09000 * 109.47192 * 299.99639 * 3 2 1 34 34 H 0.96699 * 114.00472 * 60.00143 * 6 4 3 35 35 H 1.08993 * 109.47079 * 54.99750 * 7 4 3 36 36 H 1.09007 * 109.46919 * 295.00159 * 7 4 3 37 37 H 1.09002 * 109.46741 * 59.99804 * 8 7 4 38 38 H 1.09000 * 109.46943 * 300.00499 * 8 7 4 39 39 H 0.96997 * 119.99912 * 0.02562 * 9 8 7 40 40 H 1.07999 * 120.00058 * 0.28436 * 12 10 9 41 41 H 1.08009 * 120.00226 * 0.02562 * 13 12 10 42 42 H 1.08002 * 120.05521 * 0.02748 * 15 14 13 43 43 H 1.08004 * 119.94983 * 180.23538 * 16 15 14 44 44 H 0.96994 * 120.00121 * 180.02562 * 22 21 19 45 45 H 1.07997 * 119.95049 * 179.97438 * 27 17 16 46 46 H 1.07992 * 120.04891 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8507 0.5686 0.8427 6 8 3.9658 0.5793 -1.2201 7 6 4.1572 2.5770 0.1263 8 6 5.6765 2.4477 0.2524 9 7 6.2719 3.7808 0.3721 10 6 7.6074 3.9137 0.4959 11 8 8.3187 2.9261 0.5078 12 6 8.2023 5.2450 0.6094 13 6 9.5406 5.3785 0.7278 14 6 10.1385 6.7161 0.8424 15 6 9.3226 7.8539 0.8230 16 6 9.8863 9.1040 0.9353 17 6 11.2661 9.2392 1.0573 18 8 11.8175 10.4731 1.1629 19 6 13.1441 10.5328 1.3940 20 1 13.7315 9.6266 1.4055 21 6 13.7547 11.7581 1.6173 22 7 13.0395 12.8617 1.6030 23 14 15.5931 11.8408 1.9384 24 1 16.3142 11.9964 0.6495 25 1 15.8907 13.0016 2.8155 26 1 16.0358 10.5900 2.6054 27 6 12.0815 8.1114 1.0716 28 6 11.5261 6.8569 0.9657 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.7191 1.0746 -2.0132 35 1 3.7601 3.0737 1.0116 36 1 3.9148 3.1645 -0.7593 37 1 6.0735 1.9510 -0.6330 38 1 5.9188 1.8601 1.1379 39 1 5.7049 4.5677 0.3630 40 1 7.5710 6.1212 0.5985 41 1 10.1719 4.5021 0.7383 42 1 8.2521 7.7502 0.7242 43 1 9.2574 9.9820 0.9243 44 1 13.4666 13.7185 1.7588 45 1 13.1517 8.2210 1.1661 46 1 12.1596 5.9823 0.9773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270809452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:27 Heat of formation + Delta-G solvation = -154.014864 kcal Electronic energy + Delta-G solvation = -26256.000916 eV Core-core repulsion = 22110.575845 eV Total energy + Delta-G solvation = -4145.425071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92386 -40.61066 -39.58030 -38.50271 -37.77748 -35.97078 -34.72966 -33.99936 -32.69793 -31.95878 -30.17040 -29.17482 -27.53607 -27.01931 -25.05503 -23.85912 -23.44914 -22.59329 -21.98862 -20.66034 -19.74891 -18.84666 -18.33960 -17.65275 -17.56556 -17.12351 -16.92795 -16.47517 -16.43663 -16.32451 -15.98662 -15.62752 -15.60554 -15.54090 -15.21488 -14.69440 -14.58187 -14.42392 -14.10215 -13.92536 -13.59687 -13.31152 -13.18622 -13.10701 -13.00540 -12.70694 -12.56300 -12.35968 -12.26751 -12.20843 -12.12767 -11.74881 -11.21706 -11.18862 -11.10795 -10.86020 -10.65021 -10.57920 -10.06253 -9.88438 -8.67204 -8.51921 -6.18117 -0.23694 0.59308 1.14354 1.36158 1.46039 1.53073 2.15551 2.19207 2.38314 2.80995 2.86989 3.18492 3.43147 3.52141 3.74233 3.82990 3.95440 4.00233 4.09267 4.13114 4.24045 4.27336 4.32818 4.36963 4.47037 4.49515 4.52179 4.57613 4.65756 4.68427 4.76306 4.86242 4.95400 5.03498 5.07371 5.16950 5.20345 5.30162 5.34289 5.48051 5.59838 5.64686 5.82195 5.97761 6.11259 6.20878 6.62820 6.86017 6.92606 7.31118 7.69536 8.70092 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.041407 B = 0.001336 C = 0.001303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.058584 B =20951.303769 C =21491.343319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.029 3.971 4 C 0.113 3.887 5 H 0.092 0.908 6 O -0.575 6.575 7 C -0.145 4.145 8 C 0.124 3.876 9 N -0.714 5.714 10 C 0.546 3.454 11 O -0.598 6.598 12 C -0.243 4.243 13 C 0.013 3.987 14 C -0.171 4.171 15 C -0.037 4.037 16 C -0.206 4.206 17 C 0.129 3.871 18 O -0.220 6.220 19 C -0.418 4.418 20 H 0.105 0.895 21 C -0.016 4.016 22 N -0.913 5.913 23 Si 1.017 2.983 24 H -0.263 1.263 25 H -0.270 1.270 26 H -0.253 1.253 27 C -0.249 4.249 28 C -0.041 4.041 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.388 0.612 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.418 0.582 40 H 0.156 0.844 41 H 0.122 0.878 42 H 0.163 0.837 43 H 0.124 0.876 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.512 -19.287 -3.232 30.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.048 4.048 4 C 0.053 3.947 5 H 0.110 0.890 6 O -0.382 6.382 7 C -0.183 4.183 8 C 0.000 4.000 9 N -0.365 5.365 10 C 0.338 3.662 11 O -0.482 6.482 12 C -0.264 4.264 13 C -0.007 4.007 14 C -0.172 4.172 15 C -0.055 4.055 16 C -0.225 4.225 17 C 0.077 3.923 18 O -0.125 6.125 19 C -0.493 4.493 20 H 0.122 0.878 21 C -0.215 4.215 22 N -0.550 5.550 23 Si 0.836 3.164 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.268 4.268 28 C -0.059 4.059 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.237 0.763 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.256 0.744 40 H 0.173 0.827 41 H 0.140 0.860 42 H 0.180 0.820 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.141 0.859 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.790 -20.134 -2.807 30.539 hybrid contribution 0.348 1.330 -0.157 1.384 sum -22.443 -18.804 -2.964 29.429 Atomic orbital electron populations 1.22919 0.79616 1.03618 1.00955 1.87911 1.21293 1.28734 1.95624 1.23385 0.93901 0.84937 1.02576 1.21821 0.91137 0.93688 0.88074 0.88957 1.86639 1.81243 1.53934 1.16407 1.22304 0.92767 0.97410 1.05815 1.21192 0.93585 0.83862 1.01355 1.45713 1.06501 1.10186 1.74145 1.18605 0.82652 0.89574 0.75419 1.90791 1.62427 1.41820 1.53146 1.22774 0.96063 0.96093 1.11435 1.22172 0.95312 0.94643 0.88579 1.18788 0.93178 0.92913 1.12285 1.21296 1.00530 0.89583 0.94046 1.20430 0.91213 0.99168 1.11696 1.20201 0.93915 0.85464 0.92729 1.83881 1.25416 1.24803 1.78384 1.21895 0.80715 0.95928 1.50811 0.87784 1.26576 1.05881 0.93398 0.95666 1.70144 1.38784 0.98937 1.47147 0.84608 0.73661 0.79120 0.79011 1.18764 1.19507 1.17671 1.21195 1.00502 0.92683 1.12445 1.21312 0.94582 0.96266 0.93787 0.92978 0.93029 0.89191 0.90723 0.91165 0.76309 0.87918 0.88319 0.92591 0.93001 0.74445 0.82681 0.86022 0.82002 0.85810 0.91590 0.85851 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.44 16 2 O -0.42 -5.97 10.67 -144.34 -1.54 -7.51 16 3 C 0.03 0.23 5.57 71.98 0.40 0.63 16 4 C 0.11 1.16 3.25 30.60 0.10 1.26 16 5 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 6 O -0.57 -8.19 12.84 -144.34 -1.85 -10.04 16 7 C -0.15 -0.91 5.01 30.59 0.15 -0.76 16 8 C 0.12 1.86 5.57 86.38 0.48 2.34 16 9 N -0.71 -10.97 5.55 -467.50 -2.60 -13.57 16 10 C 0.55 13.23 7.74 86.32 0.67 13.89 16 11 O -0.60 -20.06 16.23 -4.42 -0.07 -20.13 16 12 C -0.24 -5.33 9.41 23.61 0.22 -5.11 16 13 C 0.01 0.34 9.45 23.82 0.23 0.57 16 14 C -0.17 -5.26 5.87 -20.13 -0.12 -5.37 16 15 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 16 C -0.21 -8.05 9.97 22.34 0.22 -7.83 16 17 C 0.13 6.10 6.66 22.72 0.15 6.25 16 18 O -0.22 -12.67 9.74 -20.24 -0.20 -12.87 16 19 C -0.42 -23.46 9.48 67.93 0.64 -22.82 16 20 H 0.10 5.35 5.18 -2.91 -0.02 5.34 16 21 C -0.02 -0.90 5.49 84.85 0.47 -0.43 16 22 N -0.91 -54.10 13.67 21.62 0.30 -53.81 16 23 Si 1.02 41.37 29.55 68.60 2.03 43.40 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 25 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 26 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 27 C -0.25 -10.43 9.14 22.35 0.20 -10.22 16 28 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 29 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.39 2.51 9.05 -74.06 -0.67 1.84 16 35 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 37 H 0.06 1.09 7.82 -2.39 -0.02 1.07 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.42 3.34 8.45 -92.71 -0.78 2.56 16 40 H 0.16 2.40 6.07 -2.91 -0.02 2.38 16 41 H 0.12 3.36 7.52 -2.91 -0.02 3.34 16 42 H 0.16 3.42 6.16 -2.91 -0.02 3.40 16 43 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 44 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.12 5.24 5.62 -2.91 -0.02 5.23 16 46 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -79.89 395.95 1.13 -78.76 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -0.43 Total: 24.03 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 5.50 Total: -28.25 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -2.30 Total: -67.38 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -3.66 Total: -50.55 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -79.89 1.13 -78.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270809452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.255 kcal (2) G-P(sol) polarization free energy of solvation -79.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds