Wall clock time and date at job start Tue Mar 31 2020 19:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 116.99759 * 2 1 4 4 O 1.20820 * 120.00694 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99726 * 180.27211 * 3 2 1 6 6 O 1.42899 * 109.51785 * 34.60356 * 5 3 2 7 7 C 1.53117 * 109.52374 * 274.40978 * 5 3 2 8 8 C 1.53034 * 109.27367 * 182.43934 * 7 5 3 9 9 N 1.46845 * 109.52532 * 59.18391 * 8 7 5 10 10 C 1.46904 * 111.00326 * 174.15844 * 9 8 7 11 11 C 1.50697 * 109.46854 * 294.21217 * 10 9 8 12 12 C 1.38307 * 119.92690 * 269.72071 * 11 10 9 13 13 C 1.38104 * 120.06851 * 179.72426 * 12 11 10 14 14 C 1.38872 * 119.92906 * 0.55253 * 13 12 11 15 15 O 1.35756 * 120.06847 * 179.74645 * 14 13 12 16 16 C 1.34827 * 116.99727 * 174.44207 * 15 14 13 17 17 H 1.08003 * 120.00695 * 5.05379 * 16 15 14 18 18 C 1.38657 * 119.99803 * 185.05610 * 16 15 14 19 19 N 1.31553 * 119.99998 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47068 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47218 * 119.99808 * 20 18 16 23 23 H 1.48498 * 109.47016 * 240.00139 * 20 18 16 24 24 C 1.38879 * 119.86418 * 359.72220 * 14 13 12 25 25 C 1.38102 * 119.93279 * 0.02562 * 24 14 13 26 26 C 1.46850 * 111.19442 * 298.25357 * 9 8 7 27 27 C 1.53038 * 109.52495 * 61.74317 * 26 9 8 28 28 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47097 * 299.99720 * 1 2 3 30 30 H 1.08997 * 109.47049 * 59.99887 * 1 2 3 31 31 H 0.96695 * 114.00117 * 299.99231 * 6 5 3 32 32 H 1.08996 * 109.50584 * 302.38021 * 7 5 3 33 33 H 1.09002 * 109.50083 * 62.50391 * 7 5 3 34 34 H 1.09002 * 109.46749 * 299.16097 * 8 7 5 35 35 H 1.09008 * 109.46164 * 179.19387 * 8 7 5 36 36 H 1.09000 * 109.47097 * 54.20439 * 10 9 8 37 37 H 1.08991 * 109.47178 * 174.20673 * 10 9 8 38 38 H 1.08001 * 119.96345 * 0.02562 * 12 11 10 39 39 H 1.07996 * 120.03339 * 180.27821 * 13 12 11 40 40 H 0.96999 * 120.00527 * 180.02562 * 19 18 16 41 41 H 1.08008 * 120.03677 * 179.97438 * 24 14 13 42 42 H 1.08000 * 119.96804 * 180.02562 * 25 24 14 43 43 H 1.08998 * 109.46279 * 301.72641 * 26 9 8 44 44 H 1.09001 * 109.46038 * 181.76103 * 26 9 8 45 45 H 1.08995 * 109.50035 * 180.87918 * 27 26 9 46 46 H 1.08999 * 109.49801 * 60.75944 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0062 6 8 4.0979 0.1944 -0.7757 7 6 4.0892 1.1877 1.4303 8 6 5.6130 1.3294 1.4226 9 7 5.9830 2.6189 0.8255 10 6 7.4301 2.8503 0.9269 11 6 7.8150 2.9967 2.3765 12 6 7.8127 4.2469 2.9682 13 6 8.1593 4.3837 4.2980 14 6 8.5216 3.2659 5.0381 15 8 8.8678 3.3978 6.3441 16 6 9.0967 2.2625 7.0344 17 1 9.0817 1.3094 6.5266 18 6 9.3512 2.3185 8.3962 19 7 9.3688 3.4793 9.0149 20 14 9.6675 0.7455 9.3528 21 1 9.5909 -0.4174 8.4324 22 1 11.0182 0.8029 9.9672 23 1 8.6443 0.6003 10.4191 24 6 8.5284 2.0127 4.4397 25 6 8.1757 1.8817 3.1109 26 6 5.5325 2.7068 -0.5695 27 6 4.0063 2.6061 -0.6214 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8600 -0.6811 -0.4411 32 1 3.6522 1.9891 2.0259 33 1 3.8156 0.2237 1.8593 34 1 6.0502 0.5197 0.8383 35 1 5.9873 1.2821 2.4454 36 1 7.9645 2.0052 0.4928 37 1 7.6911 3.7609 0.3878 38 1 7.5348 5.1163 2.3909 39 1 8.1530 5.3596 4.7605 40 1 9.5472 3.5186 9.9675 41 1 8.8100 1.1415 5.0126 42 1 8.1804 0.9073 2.6450 43 1 5.9701 1.8907 -1.1445 44 1 5.8483 3.6598 -0.9937 45 1 3.6735 2.6557 -1.6581 46 1 3.5680 3.4299 -0.0580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271428280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:10 Heat of formation + Delta-G solvation = -129.056369 kcal Electronic energy + Delta-G solvation = -28912.565179 eV Core-core repulsion = 24768.222390 eV Total energy + Delta-G solvation = -4144.342789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25956 -39.50581 -38.81423 -37.10343 -36.85617 -35.84604 -32.70333 -32.12552 -31.19933 -30.13256 -29.63179 -28.30908 -26.13681 -25.25165 -23.65996 -23.39049 -21.93385 -21.44623 -20.31739 -20.03010 -18.44268 -17.96940 -17.52453 -16.99223 -16.81445 -16.34881 -15.52267 -15.19729 -15.10239 -14.56738 -14.46351 -14.43429 -14.16525 -13.85868 -13.69299 -13.50477 -13.39405 -13.05862 -12.75593 -12.67088 -12.57028 -12.21351 -12.14168 -11.80132 -11.73861 -11.58798 -11.39892 -11.29894 -11.23546 -11.18238 -10.82903 -10.64504 -10.58633 -10.49918 -10.41752 -10.07316 -9.32310 -8.83823 -8.25735 -8.13164 -7.16424 -6.45104 -4.03871 1.76370 2.22349 2.24642 2.29040 3.11367 3.13036 3.18530 3.74995 3.95844 3.99378 4.13590 4.33462 4.48769 4.65996 4.72430 4.80588 4.94673 5.07290 5.09952 5.16017 5.20366 5.29779 5.29995 5.38057 5.40571 5.48057 5.59139 5.72083 5.75538 5.80559 5.86955 5.89698 5.94806 5.99663 6.07592 6.22960 6.44050 6.72140 6.91056 7.01274 7.06210 7.11316 7.16497 7.28749 7.35163 7.41155 7.45624 7.84318 8.00052 9.00705 9.71579 10.73077 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002463 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.340234 B =11363.259270 C =12349.073642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.440 3.560 4 O -0.496 6.496 5 C 0.154 3.846 6 O -0.539 6.539 7 C -0.139 4.139 8 C 0.060 3.940 9 N -0.534 5.534 10 C 0.115 3.885 11 C -0.179 4.179 12 C -0.052 4.052 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.234 4.234 25 C -0.067 4.067 26 C 0.059 3.941 27 C -0.092 4.092 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.386 0.614 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.269 0.731 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 -7.566 -19.236 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.282 3.718 4 O -0.382 6.382 5 C 0.111 3.889 6 O -0.346 6.346 7 C -0.177 4.177 8 C -0.067 4.067 9 N -0.259 5.259 10 C -0.011 4.011 11 C -0.180 4.180 12 C -0.071 4.071 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.254 4.254 25 C -0.086 4.086 26 C -0.068 4.068 27 C -0.130 4.130 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.577 -6.133 -18.944 23.551 hybrid contribution -0.088 -1.926 0.456 1.981 sum -12.665 -8.060 -18.488 23.815 Atomic orbital electron populations 1.23297 0.76097 1.03836 1.02680 1.86472 1.23776 1.33595 1.83870 1.24954 0.92987 0.81682 0.72218 1.90678 1.66851 1.36307 1.44405 1.21297 0.82658 0.90738 0.94202 1.86589 1.75991 1.16859 1.55167 1.22285 0.97953 1.03846 0.93605 1.22027 0.93072 0.90009 1.01624 1.62012 1.15409 1.32119 1.16368 1.20765 0.85897 1.00223 0.94252 1.19066 1.10171 0.93691 0.95098 1.20461 0.96991 0.96178 0.93464 1.20224 1.09375 0.97421 0.94309 1.19401 0.91496 0.93112 0.85819 1.83983 1.74042 1.33763 1.16419 1.21360 1.49742 0.84868 0.90742 0.89064 1.25287 0.96793 0.98748 0.95734 1.70045 1.45350 1.24002 1.10368 0.85657 0.78325 0.80017 0.79478 1.19126 1.20161 1.20159 1.21116 1.10600 0.97933 0.95725 1.20589 0.97593 0.96790 0.93588 1.21998 0.93700 1.01567 0.89580 1.21556 0.96810 0.92982 1.01603 0.87936 0.91714 0.91855 0.76516 0.89154 0.90245 0.94188 0.88779 0.94838 0.90675 0.87053 0.86611 0.92082 0.85692 0.87941 0.93863 0.90150 0.90471 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.33 9.99 -44.42 -0.44 -3.77 16 3 C 0.44 4.87 6.84 36.01 0.25 5.11 16 4 O -0.50 -6.73 15.80 -18.75 -0.30 -7.03 16 5 C 0.15 1.56 0.95 -91.65 -0.09 1.47 16 6 O -0.54 -4.93 11.77 -49.19 -0.58 -5.51 16 7 C -0.14 -1.46 5.06 -26.65 -0.13 -1.59 16 8 C 0.06 0.72 5.02 -3.84 -0.02 0.70 16 9 N -0.53 -6.64 4.65 -236.11 -1.10 -7.74 16 10 C 0.12 1.50 5.12 -4.98 -0.03 1.48 16 11 C -0.18 -2.93 4.89 -104.57 -0.51 -3.44 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.19 -4.07 9.99 -39.40 -0.39 -4.46 16 14 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 15 O -0.18 -5.08 9.76 0.04 0.00 -5.08 16 16 C -0.39 -10.85 9.49 30.89 0.29 -10.55 16 17 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 20 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 C -0.23 -4.97 9.17 -39.39 -0.36 -5.33 16 25 C -0.07 -1.17 7.87 -39.61 -0.31 -1.48 16 26 C 0.06 0.63 5.33 -3.83 -0.02 0.61 16 27 C -0.09 -0.96 4.68 -26.65 -0.12 -1.09 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 31 H 0.39 2.34 8.64 45.56 0.39 2.73 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.45 7.76 -51.93 -0.40 0.05 16 35 H 0.09 1.30 5.75 -51.92 -0.30 1.00 16 36 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 42 H 0.10 1.54 7.95 -52.49 -0.42 1.12 16 43 H 0.04 0.46 7.76 -51.93 -0.40 0.06 16 44 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.10 1.13 7.79 -51.93 -0.40 0.72 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -32.52 377.07 -7.99 -40.51 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.86 Total: 6.25 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.12 Total: -14.17 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: -0.34 Total: -32.24 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.32 Total: -21.39 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.52 -7.99 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271428280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.549 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds