Wall clock time and date at job start Tue Mar 31 2020 19:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34221 * 116.99759 * 2 1 4 4 O 1.20820 * 120.00694 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99726 * 180.27211 * 3 2 1 6 6 O 1.42899 * 109.51785 * 34.60356 * 5 3 2 7 7 C 1.53117 * 109.52374 * 274.40978 * 5 3 2 8 8 C 1.53034 * 109.27367 * 182.43934 * 7 5 3 9 9 N 1.46845 * 109.52532 * 59.18391 * 8 7 5 10 10 C 1.46904 * 111.00326 * 174.15844 * 9 8 7 11 11 C 1.50697 * 109.46854 * 294.21217 * 10 9 8 12 12 C 1.38307 * 119.92690 * 269.72071 * 11 10 9 13 13 C 1.38104 * 120.06851 * 179.72426 * 12 11 10 14 14 C 1.38872 * 119.92906 * 0.55253 * 13 12 11 15 15 O 1.35756 * 120.06847 * 179.74645 * 14 13 12 16 16 C 1.34827 * 116.99727 * 174.44207 * 15 14 13 17 17 H 1.08003 * 120.00695 * 5.05379 * 16 15 14 18 18 C 1.38657 * 119.99803 * 185.05610 * 16 15 14 19 19 N 1.31553 * 119.99998 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47068 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47218 * 119.99808 * 20 18 16 23 23 H 1.48498 * 109.47016 * 240.00139 * 20 18 16 24 24 C 1.38879 * 119.86418 * 359.72220 * 14 13 12 25 25 C 1.38102 * 119.93279 * 0.02562 * 24 14 13 26 26 C 1.46850 * 111.19442 * 298.25357 * 9 8 7 27 27 C 1.53038 * 109.52495 * 61.74317 * 26 9 8 28 28 H 1.09004 * 109.46868 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47097 * 299.99720 * 1 2 3 30 30 H 1.08997 * 109.47049 * 59.99887 * 1 2 3 31 31 H 0.96695 * 114.00117 * 299.99231 * 6 5 3 32 32 H 1.08996 * 109.50584 * 302.38021 * 7 5 3 33 33 H 1.09002 * 109.50083 * 62.50391 * 7 5 3 34 34 H 1.09002 * 109.46749 * 299.16097 * 8 7 5 35 35 H 1.09008 * 109.46164 * 179.19387 * 8 7 5 36 36 H 1.09000 * 109.47097 * 54.20439 * 10 9 8 37 37 H 1.08991 * 109.47178 * 174.20673 * 10 9 8 38 38 H 1.08001 * 119.96345 * 0.02562 * 12 11 10 39 39 H 1.07996 * 120.03339 * 180.27821 * 13 12 11 40 40 H 0.96999 * 120.00527 * 180.02562 * 19 18 16 41 41 H 1.08008 * 120.03677 * 179.97438 * 24 14 13 42 42 H 1.08000 * 119.96804 * 180.02562 * 25 24 14 43 43 H 1.08998 * 109.46279 * 301.72641 * 26 9 8 44 44 H 1.09001 * 109.46038 * 181.76103 * 26 9 8 45 45 H 1.08995 * 109.50035 * 180.87918 * 27 26 9 46 46 H 1.08999 * 109.49801 * 60.75944 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0062 6 8 4.0979 0.1944 -0.7757 7 6 4.0892 1.1877 1.4303 8 6 5.6130 1.3294 1.4226 9 7 5.9830 2.6189 0.8255 10 6 7.4301 2.8503 0.9269 11 6 7.8150 2.9967 2.3765 12 6 7.8127 4.2469 2.9682 13 6 8.1593 4.3837 4.2980 14 6 8.5216 3.2659 5.0381 15 8 8.8678 3.3978 6.3441 16 6 9.0967 2.2625 7.0344 17 1 9.0817 1.3094 6.5266 18 6 9.3512 2.3185 8.3962 19 7 9.3688 3.4793 9.0149 20 14 9.6675 0.7455 9.3528 21 1 9.5909 -0.4174 8.4324 22 1 11.0182 0.8029 9.9672 23 1 8.6443 0.6003 10.4191 24 6 8.5284 2.0127 4.4397 25 6 8.1757 1.8817 3.1109 26 6 5.5325 2.7068 -0.5695 27 6 4.0063 2.6061 -0.6214 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8600 -0.6811 -0.4411 32 1 3.6522 1.9891 2.0259 33 1 3.8156 0.2237 1.8593 34 1 6.0502 0.5197 0.8383 35 1 5.9873 1.2821 2.4454 36 1 7.9645 2.0052 0.4928 37 1 7.6911 3.7609 0.3878 38 1 7.5348 5.1163 2.3909 39 1 8.1530 5.3596 4.7605 40 1 9.5472 3.5186 9.9675 41 1 8.8100 1.1415 5.0126 42 1 8.1804 0.9073 2.6450 43 1 5.9701 1.8907 -1.1445 44 1 5.8483 3.6598 -0.9937 45 1 3.6735 2.6557 -1.6581 46 1 3.5680 3.4299 -0.0580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271428280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:09 Heat of formation + Delta-G solvation = -151.863368 kcal Electronic energy + Delta-G solvation = -28913.554165 eV Core-core repulsion = 24768.222390 eV Total energy + Delta-G solvation = -4145.331775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08012 -40.86256 -40.03428 -38.48670 -37.68477 -36.98253 -34.35030 -33.43565 -32.12283 -31.65270 -30.91390 -29.03776 -27.61960 -26.74116 -24.64884 -24.41425 -23.48652 -22.39129 -21.75458 -20.84773 -19.80308 -19.23484 -18.78304 -18.31591 -17.68070 -17.15445 -16.56253 -16.43772 -16.27526 -16.15907 -15.80352 -15.50199 -15.30109 -15.09244 -14.99223 -14.75429 -14.41290 -14.31690 -14.13673 -13.81485 -13.58605 -13.39227 -13.18680 -13.00458 -12.95488 -12.61712 -12.60299 -12.46179 -12.28732 -12.18316 -12.13722 -12.09332 -11.90060 -11.87060 -11.40306 -11.13362 -10.92281 -10.78091 -9.71550 -9.20480 -8.84360 -8.45493 -6.13336 0.64631 0.71896 0.92444 1.35659 1.44006 1.52865 1.54005 2.18699 2.74673 3.00286 3.12806 3.34220 3.36858 3.51334 3.56607 3.74587 3.99489 4.08541 4.20173 4.23149 4.26083 4.26939 4.27916 4.38399 4.49122 4.58167 4.63077 4.65591 4.66350 4.69644 4.84304 4.85276 4.95002 5.00445 5.02956 5.13549 5.17815 5.18788 5.25590 5.35407 5.62195 5.75124 5.84887 6.05474 6.14790 6.21732 6.30441 6.42950 6.63453 6.99557 7.81960 8.78233 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002463 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.340234 B =11363.259270 C =12349.073642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.441 3.559 4 O -0.528 6.528 5 C 0.161 3.839 6 O -0.541 6.541 7 C -0.135 4.135 8 C 0.062 3.938 9 N -0.547 5.547 10 C 0.117 3.883 11 C -0.151 4.151 12 C -0.048 4.048 13 C -0.207 4.207 14 C 0.113 3.887 15 O -0.235 6.235 16 C -0.410 4.410 17 H 0.102 0.898 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.018 2.982 21 H -0.250 1.250 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.242 4.242 25 C -0.060 4.060 26 C 0.066 3.934 27 C -0.093 4.093 28 H 0.135 0.865 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.400 0.600 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.109 0.891 40 H 0.272 0.728 41 H 0.117 0.883 42 H 0.136 0.864 43 H 0.048 0.952 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 -9.863 -22.360 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.284 3.716 4 O -0.416 6.416 5 C 0.118 3.882 6 O -0.349 6.349 7 C -0.173 4.173 8 C -0.066 4.066 9 N -0.272 5.272 10 C -0.009 4.009 11 C -0.152 4.152 12 C -0.066 4.066 13 C -0.226 4.226 14 C 0.063 3.937 15 O -0.142 6.142 16 C -0.486 4.486 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.261 4.261 25 C -0.078 4.078 26 C -0.062 4.062 27 C -0.131 4.131 28 H 0.153 0.847 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.162 0.838 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.067 0.933 44 H 0.112 0.888 45 H 0.102 0.898 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.309 -8.463 -22.137 27.181 hybrid contribution -0.037 -1.204 1.041 1.592 sum -13.346 -9.666 -21.096 26.769 Atomic orbital electron populations 1.23581 0.74676 1.05925 1.02451 1.86463 1.25161 1.32535 1.83267 1.25168 0.93399 0.81690 0.71349 1.90668 1.67591 1.37382 1.46002 1.21118 0.82125 0.91073 0.93860 1.86567 1.75772 1.17507 1.55073 1.22232 0.97093 1.04154 0.93842 1.21987 0.93790 0.90284 1.00541 1.61933 1.14737 1.32635 1.17917 1.20788 0.86663 1.02087 0.91394 1.19576 1.06148 0.92594 0.96893 1.20843 0.95551 0.98141 0.92071 1.20459 1.09812 0.96576 0.95798 1.19942 0.93493 0.95243 0.85046 1.83946 1.77153 1.34490 1.18604 1.21850 1.49886 0.85409 0.91492 0.88073 1.26594 0.96378 1.02715 0.96537 1.70194 1.48259 1.26856 1.10820 0.84530 0.78355 0.75521 0.77806 1.17311 1.19407 1.19465 1.21208 1.10954 0.96595 0.97336 1.20919 0.96030 0.98879 0.92008 1.21999 0.93389 1.02545 0.88230 1.21536 0.96903 0.92822 1.01808 0.84723 0.92170 0.91942 0.74867 0.90971 0.88539 0.92891 0.90827 0.93183 0.88675 0.83809 0.87311 0.91923 0.86527 0.84584 0.93333 0.88753 0.89802 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.84 9.99 -46.37 -0.46 -6.30 16 3 C 0.44 9.02 6.84 71.24 0.49 9.51 16 4 O -0.53 -13.89 15.80 21.98 0.35 -13.55 16 5 C 0.16 2.87 0.95 -11.46 -0.01 2.86 16 6 O -0.54 -8.05 11.77 -135.63 -1.60 -9.64 16 7 C -0.14 -2.54 5.06 30.64 0.16 -2.38 16 8 C 0.06 1.28 5.02 86.33 0.43 1.71 16 9 N -0.55 -11.61 4.65 -900.93 -4.19 -15.79 16 10 C 0.12 2.53 5.12 85.56 0.44 2.97 16 11 C -0.15 -4.49 4.89 -19.83 -0.10 -4.59 16 12 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 13 C -0.21 -8.89 9.99 22.39 0.22 -8.66 16 14 C 0.11 5.63 6.65 22.58 0.15 5.78 16 15 O -0.24 -14.27 9.76 -22.78 -0.22 -14.49 16 16 C -0.41 -23.95 9.49 67.92 0.64 -23.31 16 17 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 18 C -0.03 -1.44 5.49 84.83 0.47 -0.97 16 19 N -0.92 -57.13 13.67 21.61 0.30 -56.83 16 20 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 21 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 C -0.24 -10.33 9.17 22.39 0.21 -10.12 16 25 C -0.06 -1.96 7.87 22.25 0.18 -1.79 16 26 C 0.07 1.14 5.33 86.33 0.46 1.60 16 27 C -0.09 -1.72 4.68 30.65 0.14 -1.58 16 28 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.40 3.42 8.64 -74.06 -0.64 2.78 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 0.97 7.76 -2.39 -0.02 0.96 16 35 H 0.07 1.83 5.75 -2.38 -0.01 1.82 16 36 H 0.05 0.98 8.07 -2.39 -0.02 0.96 16 37 H 0.09 1.76 7.93 -2.39 -0.02 1.74 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 42 H 0.14 3.57 7.95 -2.91 -0.02 3.55 16 43 H 0.05 0.82 7.76 -2.39 -0.02 0.80 16 44 H 0.09 1.39 8.02 -2.39 -0.02 1.37 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.82 7.79 -2.39 -0.02 1.80 16 Total: -1.00 -75.77 377.07 1.85 -73.91 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.37 Total: 26.60 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 5.29 Total: -28.84 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -3.89 Total: -72.63 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.93 Total: -43.98 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -75.77 1.85 -73.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271428280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.951 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds